Xiphophorus couchianus (Monterrey platyfish): 114153522
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Entry
114153522 CDS
T05908
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03030
DNA replication
xco03420
Nucleotide excision repair
xco03430
Mismatch repair
xco03440
Homologous recombination
xco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114153522
03420 Nucleotide excision repair
114153522
03430 Mismatch repair
114153522
03440 Homologous recombination
114153522
03460 Fanconi anemia pathway
114153522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114153522
03032 DNA replication proteins [BR:
xco03032
]
114153522
03400 DNA repair and recombination proteins [BR:
xco03400
]
114153522
Transcription factors [BR:
xco03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
114153522
DNA replication proteins [BR:
xco03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
114153522
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
114153522
MMR (mismatch excision repair)
114153522
DSBR (double strand breaks repair)
HR (homologous recombination)
114153522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
Extensin_1
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
114153522
NCBI-ProteinID:
XP_027887924
LinkDB
All DBs
Position
11:29677672..29721351
Genome browser
AA seq
700 aa
AA seq
DB search
MTAKLTHGAVEALVKGSHVENPVLQLLNIRQINTSGVPRYRLMMSDGQHYLSSFLMATQL
NHLAEEKLLVPHCVCLLKRTTNNTLSDGRRVVVIVDMVVLKSAEEAGEKIGNPKSYSTDG
QLSSPNKVSSTTSEPSSTSAAEVPGPSNNSKGWGARFTGKAPVKTSPMKTFPLKGSPMKT
SPIKASPMMTSPMKGSPMKGSSMMTSPMKGSQMKSSPMMTSPMKGSPMKGSSMMTSPMKG
SPMKGSPMMTSPMKGSPMKASTSSPGSVPKVMPIATLNPYISKWTIRARVTNKSNIRNWS
NSRGEGKLFSFEVVDESGEIRITAFNNEVDKFFTLLEQGKVYYISKATLKVANKQYTTLK
NDYEMTLHAHSSIVPCTDSPEVPVMQCDFVPIGELENRDKDSIVDLIGVCNSAEDVSRIT
TKTSREVSKRAISLIDTTGKVVTVTLWGEEAEKFDDSGQPVVAIKGARLSDFRGISLSAL
FSSTIMVNPDLPEAFRLRAWYDREGYAVDSQSLTETMSVSVGSKMNWRTLSDVKNENMGH
GEKADYFSCVATIVYMRKENCLYQACPSSDCNKKVIDQQNGFYRCEKCNREFPNFKYRLL
LSANLADFGDNQWVTCFQETAEVLLGRKAEELGQLRETDEAEFDEVFQKANFSTHIFKNR
VKLETYNDESRVKVTVMEVLPVDHRVYSRRLLSNIQKLAH
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgaaattaacacatggggcagttgaagcccttgtgaaaggatcgcatgtagag
aatccggttctgcagttactgaacattcgtcagattaatacctcaggtgtgcccaggtac
cgcctcatgatgagtgatggtcagcactacttgtcttccttcttgatggccacccagttg
aaccatctggcagaagagaaacttcttgtaccacattgtgtgtgtttgttaaaaaggaca
accaataacactttgtcagatggccggcgcgtggtcgttattgtggacatggtggtcttg
aagtcagcagaagaagctggagaaaagattggaaatcccaaatcatattcaacagatggt
cagttgtcatctccaaataaggtgtcatcaaccacctcggaaccatcatccacttcagcc
gctgaggtacctggaccgtccaacaacagcaaaggatggggagcacgttttactggaaaa
gctcctgtgaagacttcaccaatgaagacctttcctttgaaagggtcgcccatgaagacg
tcacccataaaagcctcacctatgatgacctctcccatgaaagggtcacccatgaagggt
tcatcaatgatgacctctcccatgaaagggtcacagatgaagagttcaccaatgatgacc
tctcccatgaaagggtcacccatgaagggttcatcaatgatgacctctcccatgaaaggg
tcacccatgaagggttcaccaatgatgacctctcccatgaaagggtcacccatgaaggcg
tccaccagttcaccaggttctgtcccaaaggtgatgcctatcgctaccctcaacccgtac
atcagcaagtggactattagagccagagtcacaaacaaatccaatatccgtaactggagt
aactccagaggggagggcaagctcttctcctttgaggtcgtggatgagagcggtgaaatc
aggatcacagccttcaacaatgaagtggacaagtttttcactctattggagcaaggcaag
gtgtactacatctcgaaggctactctaaaggtagccaacaaacagtatacgacactgaag
aacgactacgagatgaccctccatgctcattcatctattgtaccttgtacggacagtccg
gaagtcccagtaatgcagtgtgactttgtgcccattggagagctggaaaaccgagacaaa
gactccattgttgatttaattggagtgtgcaacagtgcagaggatgtatcccgtatcacc
actaagaccagccgggaagtctccaagagggccatcagcctaatagacaccactggcaaa
gtggtgacagtcacactgtggggagaagaggcggaaaagtttgacgactccggacagcct
gttgttgccatcaaaggagctcgcttgtctgattttcggggcatatctctctcggctttg
ttcagttctacgattatggtcaacccagatttacccgaagccttcagactcagggcctgg
tatgaccgggaaggttatgcagttgacagccagtcactaacagaaaccatgtcagtcagt
gttggatcgaagatgaactggagaacgctgagtgatgttaagaatgaaaacatgggacac
ggagaaaaggcagactattttagctgcgtggcaactatagtatacatgcgtaaagaaaat
tgtttgtatcaagcctgtccgtcttcagactgcaacaagaaggtcatagatcaacagaat
ggtttttaccgctgcgagaagtgtaacagagagttccccaacttcaaatatagactccta
ctttcagctaacttggcagactttggggataaccagtgggtgacatgcttccaggagaca
gctgaggtcctgctgggtcgcaaggcagaagagctgggacagctcagagaaacagacgag
gcagagtttgatgaagtcttccagaaagccaacttctctacccacatctttaaaaaccga
gtcaagctggagacatataatgacgagagtcgggtgaaagtgaccgtaatggaagtactt
cctgtcgaccacagagtgtacagccgaagactcctcagcaacattcaaaaattggctcac
tga
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