Xiphophorus couchianus (Monterrey platyfish): 114153552
Help
Entry
114153552 CDS
T05908
Symbol
trpc4
Name
(RefSeq) LOW QUALITY PROTEIN: short transient receptor potential channel 4
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xco04040
]
114153552 (trpc4)
Ion channels [BR:
xco04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
114153552 (trpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
Ank_5
PKD_channel
YVC1_C
Egg_lysin
Motif
Other DBs
NCBI-GeneID:
114153552
NCBI-ProteinID:
XP_027887971
LinkDB
All DBs
Position
11:28802394..28830914
Genome browser
AA seq
956 aa
AA seq
DB search
MSQLYYRRTDSSSYRDRIPLRIVRAESELSPLEKAYLGAVEKGDYASVKQALEEAEIYFK
ININCIDPLGRTALLIAIENENLEIIELLLSFSVYVGDALLHAIRKEVVGAVELLLNHKK
SSGGMQVPPILLDKQFSDFTPDITPIILAAHTNNYEIIKLLVQKGVSMPQPHEVRCNCVE
CVSSSDVDSLRHSRSRLNIYKALSSPSLIALSSEDPFLTAFRLSWELQELSKVENEFKSE
YEELSQQCKQFAKDLLDQTRSSRELEMILNYRDDANLLEEEGNNDLARLKLAIKYHQKEF
VAQPNCQQLLASRWYDEFPGWRRRQWAGKFITCVFIGLLYPVFALCYLIVPKSRYGLFIR
KPFIKFICHTASYLTFLFLLLLASQHIVTTEQDRQDRQGPPPTTVEWMILPWVLGFIWAE
IKQMWDGGFQDYVHDWWNLMDFVMNSLYLATISLKIVAYTKYSGTKPRNQWEMWHPTLVA
EAVFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQL
YFYYETKASEEKGKCKGIRCVEQNNAFSTLFETLQSLFWSIFGLISLYVTNVDPDHQFTE
FVGATMFGTYNIISLVVLLNMLIAMMNNSYQHIADHADIEWKFARTKLWMSYFEEGATVP
APFNIIPSPKTFWYLMCWLKRQVCKRTRSKRTKSFGTLGRRAAENVRINHQYQEVLRNLV
KRYVAAMIRDAKTEEGLTEDNFKELKQDISSFRYEVMGMMKMGKPALQGAMASSSSVESS
LAYPNSSLKISPGLPASQAKSKLNRFKITASILKQTSSLASPRPPEASNGLPNGLLASDE
GCSEPSSQWRNCSKDISDFSLFQKRHWSGKEVPSGSGEVLREMYSLSEEAGESGGSDTEE
ESKEDTAKAEEELLVNKSDEDFPENKKELNINRSLECEDKQPEEEXKKSNSTRKEP
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagctgtattaccggaggactgacagctcttcataccgggaccgcatcccgtta
cgaattgtgcgggctgagtcggagctgtcgcctttagaaaaagcctacctcggagctgtg
gagaagggagactacgccagtgtcaaacaagccctggaggaggcagagatctactttaag
atcaacatcaactgcatcgatccccttggccgcacggctctgctcattgccattgagaat
gagaatttggaaatcattgagcttttgctgagcttcagtgtctacgttggtgatgccctg
cttcacgctatccgcaaggaagtggtgggagccgtggagctgctgctgaatcataagaag
tcaagtggaggcatgcaggttccccctatcttattggacaagcagttttctgacttcacc
cctgacatcactcccatcattcttgctgcacacaccaataactatgaaattatcaagctt
ctggtgcagaaaggcgtgtctatgccacagccacatgaggtgcgctgcaactgtgtggag
tgtgtgtctagttcagatgtggacagcctccggcactctcggtctcgtctcaacatctac
aaagcgctttcgagtccctctctaattgccctctccagcgaagatccctttctcactgca
ttcaggctcagctgggagctgcaggagctcagcaaggtggagaatgagttcaaatctgag
tatgaggagctgtctcagcagtgtaaacagtttgctaaagacctcctggaccaaacaagg
agctccagagagctggaaatgatcctgaactatagagacgatgccaacttactggaagag
gaaggcaataatgaccttgcaagactcaaactagcaatcaagtaccatcaaaaagagttt
gtggctcagccaaactgtcagcagctcctggcctcgaggtggtacgatgagtttcctggg
tggaggcggcgccagtgggcaggaaaatttatcacctgtgtctttattggcctcctctat
cctgtttttgccctttgttacctcatcgtacccaagagtcgctatggcctcttcatccgc
aagcccttcatcaagtttatctgccacactgcatcgtacctgacctttctgttcctgctg
ctgcttgcctcccagcatattgtcaccacagaacaagacaggcaagaccgacagggccct
ccaccgaccactgtagagtggatgatactaccatgggtgctgggatttatttgggcagag
attaaacaaatgtgggacggtggtttccaggactacgtccatgactggtggaacttgatg
gactttgtcatgaactctctttacctggccactatatccctcaagattgtagcctacacc
aagtacagtggtactaaacccaggaaccagtgggaaatgtggcacccaactttagtagct
gaggcagtgtttgccattgcaaacatattcagttccctgcgcctcatctccctcttcacc
gctaattcccatctggggcctctgcagatctcactcggccgaatgctactggatattctg
aagttcctttttatttactgtctggttctcctggccttcgctaatgggcttaaccagctg
tacttttactatgagacaaaagcttcagaagagaaaggaaaatgcaaagggatccgctgt
gtagagcagaacaatgctttctccacgttgtttgagaccctacaatcccttttctggtct
atctttggactaatcagcctctacgtaactaatgtggatccagaccaccaatttactgaa
tttgttggtgccaccatgtttgggacatacaacataatttccctggtggtgctcctcaac
atgctgatagccatgatgaataactcttaccagcacattgctgaccatgcagacattgag
tggaagttcgcaagaacaaagttgtggatgagttactttgaggagggcgccacggtgcct
gcccctttcaacattattccaagccccaaaacattctggtacctcatgtgttggctcaag
agacaagtgtgtaagaggactcggtccaagagaaccaaaagctttggaactcttggaaga
cgggctgcggaaaacgtgaggataaaccatcaatatcaggaggtattgaggaacctggta
aaacgttatgtggctgcaatgatcagagatgctaagacagaagagggcctgactgaagac
aacttcaaggagttgaaacaagatatttccagcttccgctatgaggtgatgggcatgatg
aagatgggaaagcctgctctacagggcgcgatggccagttccagttcagtggaatccagt
cttgcttatccaaattcctcgctcaaaatttcccctggccttccagccagccaggcaaaa
agcaagctcaaccgattcaagatcactgcatccatcctcaaacaaaccagctctcttgct
tcacccaggcctcctgaagcatccaacggtcttcctaatggactcttggcatcagatgag
ggttgcagtgaaccatcaagccagtggagaaactgctccaaagatattagtgactttagt
ttgtttcaaaaacgccactggagtggtaaagaagtcccatcagggtcaggcgaggttctg
agagagatgtactctctgtcagaggaggcaggagagtcagggggttcagacacagaagag
gagagtaaggaggatacagctaaggctgaagaagaactgctggtgaataaatcggatgaa
gactttccagagaataaaaaagagctaaacattaacagaagccttgaatgtgaagataaa
caacctgaagaagagnaaaaaaaatctaactccacaagaaaggaaccatga
DBGET
integrated database retrieval system
