Xiphophorus couchianus (Monterrey platyfish): 114153625
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Entry
114153625 CDS
T05908
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114153625 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xco03041
]
114153625 (ddx46)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114153625 (ddx46)
Spliceosome [BR:
xco03041
]
Complex A
U2 snRNP components
U2 related factors
114153625 (ddx46)
Complex B
114153625 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
114153625
NCBI-ProteinID:
XP_027888094
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All DBs
Position
11:5625954..5643519
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AA seq
1069 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGTRSKSRSPDNKRSKKDDRDRSRRDRSRSRDRRRSRSRDRKR
ARRSRSRDRRRSRSRERKRSRSRSRTRRSRTGSPAKSKKSDEKAKSKEKEKESVEPVSEK
KKVKEEKEDEKVEDVSSKQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELE
EMKQGKKWSLEDDDDDDEEGPALMEVDEDEEDGEEKGEGKEKDAEEVKKEEGEAEKEAPM
EQQEEEDEVDPLDAYMEEVKQEVKKFNIGAMKGNDKKGATTVTKVVTVVKTKKQPMTHKK
KGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHTKIQYEPYRKNFYVEVP
ELAKMTTEEVNAYRLELEGITVKGKGCPKPIRTWVQCGVSMKILNSLKKQAYEKPTPIQA
QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEEGEGPISVIMTPTRELALQ
ITKECKKFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNL
RRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILAKPIE
VQVGGRSVVCSDVEQHVLVIDEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLM
KASYPCLSLHGGIDQYDRDSIINDFKTGVCRLMVATSVAARGLDVKQLILVVNYNCPNHY
EDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDILKALELSGSAVPPELEQLWASFKDQQ
KAEGKVIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESM
FNSKKRVKDLSAPGAAGGPAGAVTASSAAPGGPAGLMPGSAGNNQKLEMAKRLALKINAQ
KNLGAEAQDVMQQATNAILRGDPIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQA
AEQAETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEG
ERKIYLAIESASELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtccagacactacaggaagcgctcagcgtcccgcggccggtcgggcacc
cggtcgaagagtcgctccccggacaacaagcgctcaaagaaagacgaccgagaccgaagc
aggagggatcggtccaggagcagagaccgcaggaggtcccggtccagagacaggaagaga
gcccggcggtcccggagcagagaccggaggaggtccagaagccgggagaggaagagatcg
cgcagtcggagtcgaactcgcaggtcccgaaccggcagcccggcaaagagcaagaagtca
gatgaaaaagccaagagcaaagaaaaggaaaaggagagcgtcgagccagtttctgagaag
aagaaggtgaaagaggagaaagaagatgagaaggtggaggacgtaagttcaaaacaagat
tttgaccaaaacaaactggaggaagaaatgaggaagaggaaggagcgtgtggagaaatgg
agagaggagcagaggaagaaggcgattgaaaacattggagagataaagaaagaactggaa
gaaatgaaacagggcaagaaatggagcctggaggacgatgacgatgatgatgaggagggt
cctgctctgatggaagtggatgaagatgaagaggatggggaagaaaaaggggagggaaaa
gagaaggatgcagaggaagtgaagaaggaggagggcgaggctgagaaggaggcgccgatg
gagcagcaggaagaggaggacgaggtggatcctctggacgcctacatggaggaggtcaaa
caggaagtgaagaagttcaacatcggagccatgaagggaaacgataagaaaggagcaacg
acggtaaccaaagtggtgacggtggtaaagaccaagaaacaaccaatgacgcacaagaag
aagggagagctgatggagaacgaccaggacgccatggagtactcgtcggaggaagaggag
gtggacctgcagacggctctgacgggttttcagaccaagcagaggaaagttctggagccg
gtcgaccacaccaagatccagtacgagccgtaccgcaagaacttctacgtggaagttcct
gagctggccaagatgaccacagaggaggtgaacgcgtacaggctggagctggaaggcatc
accgtcaaaggcaaaggttgtcccaaacccatcaggacctgggtccagtgtggcgtgtcg
atgaagatcctcaactccctgaagaagcaggcgtacgagaagccgacgcctatccaggcc
caggccatccccgccatcatgtccggcagagacctgatcggcatcgccaagaccggcagc
gggaagaccatcgccttcctgctgcccatgttccgccacatcatggaccagcgccccctg
gaggagggagaggggcccatctctgtaatcatgactcccaccagagagctggctctgcag
atcaccaaggagtgtaagaagttctccaaaccgctggggctgcgagtggtgtgtgtttac
ggagggacaggaatcagcgaacagattgcggagctgaagcgcggagcagagatcatcgtt
tgcactccagggaggatgattgacatgctgggcgccaacagcggccgggtcaccaacctg
cggagggtcacgtacgtggtgctggacgaggcagacaggatgtttgacatgggctttgag
ccacaggtgatgcgtatcgtagacaacgtgcgtcccgaccggcagacggtcatgttctcc
gccaccttccccagagccatggaggcgctggcccgcaggatcctggccaagcccatcgag
gtgcaggtcggaggtcgcagtgtggtctgctcagatgtggagcagcacgtgctggtgatt
gatgaggagaagaagttcctgaagctgctggagatcttgggtcactaccaggagaaagga
tccgtcatcatctttgtggacaaacaggagcatgcagacggcctgctgaaggacctgatg
aaagcctcgtacccctgcctgtctttacatggaggcatcgaccagtacgaccgagacagc
atcatcaacgactttaagacgggagtgtgtcgcctgatggtggccacctcagtggcggcc
agaggcttggacgtcaagcagctcatcctggtggtcaactacaactgccccaaccactat
gaggactacgtccacagggcagggcgcaccggcagggcgggcaacaagggttacgcctac
accttcatcacagaggaccaggctcgctacgctggcgacatcctgaaggccttggagctg
tcaggctcagccgttcctccagaactggagcagctgtgggcttccttcaaggaccagcag
aaggcggagggtaaggtgattaagagcagcagtggcttctcagggaaaggctttaagttc
gatgagacggagcacgctctggccaacgagaggaagaagctgcagaaagctgcgctggga
ctgcaggactctgacgatgaggacggcgccttggatatcgaggagcaaatagaaagcatg
ttcaactctaagaagcgggtgaaggacctgtcggctcccggcgcggccggcggtcccgcc
ggcgccgtcacggcttcatcggcggcccccgggggcccggcgggcctcatgcccggatcc
gctggaaacaaccagaagctggagatggccaaaaggctggcgctcaagatcaacgctcag
aagaacctgggcgccgaggctcaggacgtgatgcagcaggccaccaacgccatcctgcgc
ggcgaccccatcatgaccccgtcggtgtcggccaagacaatcgcagagcagctggcggag
aagatcaacgccaagctgaactacacgccggtggagaagctggaggaggagcggcaggcg
gctgaacaggccgaaaccgtcaagagatacgaagaggagctggagatcaacgacttccct
cagacggcccggtggaaggtgacgtctaaagaggctttgcagaggattggtgaatactct
gaggcggccatcaccatcagaggaacgtatttccctccaggcaaagagccgaaggaggga
gaacgaaagatttatctggctattgagagtgcgagtgaactggctgtgcagaaagccaaa
acggagattacacgactaataaaggaagagctcatcagattacaaaattcctaccagccg
acaagcaaaggccgctacaaagtgttgtag
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integrated database retrieval system
