Xiphophorus couchianus (Monterrey platyfish): 114153722
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Entry
114153722 CDS
T05908
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xco03009
]
114153722 (ighmbp2)
03012 Translation factors [BR:
xco03012
]
114153722 (ighmbp2)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114153722 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
114153722 (ighmbp2)
Ribosome biogenesis [BR:
xco03009
]
Eukaryotic type
Other ribosome biogenesis factors
114153722 (ighmbp2)
Translation factors [BR:
xco03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114153722 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
NAT10_TcmA_helicase
ResIII
AAA_16
nSTAND3
AAA_22
IstB_IS21
UvrD-helicase
Flavi_DEAD
SLFN-g3_helicase
nSTAND_NTPase5
PhoH
AAA_25
DnaB_C
HEM4
Zot
ABC_tran
AAA
SRP54
ATPase
NPHP3_N
AAA_31
SpoIIAA-like
Motif
Other DBs
NCBI-GeneID:
114153722
NCBI-ProteinID:
XP_027888242
LinkDB
All DBs
Position
2:12009650..12027201
Genome browser
AA seq
1005 aa
AA seq
DB search
MAVETFVSKTLELLQEEREAEIEETKIWQENISLKDLQNKGVCLLKLQIGSQSTGLYGRT
VIVLEPRKHLGFSSLPSNNFGPGDIVGIYDPSGCSAASQVCTGIVIRISQASVSVAVDDL
KDGASFDSDGLYNLLKLANDVTYKRMKRALNALNGYRTGPASCLIPVLFGDAQPSSHSQS
NEFEFFNSKLDDSQREAVSFALSQRELAVVHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILAQSDNANIIADIRKDIDK
ALVGMKKKSEKGERGNFKREIGELRKELKNRETAAIAEILKSADVVLSTNTGACDDGPLK
FLPAEHFDWVMIDECAQALESSCWIALLRARKCILAGDYKQLPPTIKSQKAAAKGLSLSL
MERLIQMYGDSVVRMLTVQYRMNSAIMEWASKEMYNGRLTAHSSVEKHLLKDLPGVACVE
ETSTPLLLIDTAGCGLSEMEIADEQSKGNQGEVDIVSLHIKSLTEAGVKAKDIAVIAPYN
LQVDLLRQKLSARHPEMEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RARRHIAVVCDTQTVGNHAFLKSLVDHMAVFGEVRTAFEYLQDIVPQNYTRDHKATKTNT
SSTSSKQKSRDHGPGKPKEGQKTTSSSKDNTAGSQNHTKSHTPAQKDQKDKSRYAEIRLQ
VENFMKDVNMKNLHFPSSFNSHDRLLVHQIAEELGLVHESRGEGGGRCITVSRPVALEPV
EEPTQEETQEEEPAPALQSEPPPSQPLVDLKTLHLERMQREQQKREENVQQKKQQNCNPA
AQGAKKSKGLSQTIGKCFNSTSAYRITLDYFPSGKNKTKAGACDIAAAAVPDDDFDALIS
AVVKADSVCSFVKCKASVLTLGQLCIFCNRQFCLSHHIPEVHGCGDEAKSHARMRISKEG
VLYAGSGKKDKSLDPNKKVYLQRKLDSKLKDMASQRKPKNKEKDT
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggcagtggagacatttgtgtccaagactctggagcttctacaggaggagcgggaggct
gaaatagaggaaaccaagatatggcaggagaacatttccttgaaggatcttcagaataaa
ggagtttgcctgctgaagcttcagatagggagtcagtccaccggcctgtatggtcgcacc
gtcatcgttttagagcccaggaagcatcttggtttctcctctcttccgagcaacaacttt
gggccaggcgatattgttggcatatatgacccttctggatgcagtgcagcctcgcaggtc
tgcacagggatagtaataaggatcagccaagcttctgtcagtgtggccgttgatgacctg
aaggatggagccagctttgattcagatggtctttataatctcttgaaactggccaatgat
gttacctacaaacggatgaaacgggccttaaatgcattaaatggctacagaacgggacca
gcttcctgtctgatacctgttctctttggagatgcgcaaccttcttctcactcacagtca
aatgagtttgagttctttaattccaaattggacgattcccagagagaagctgtatccttc
gctctttcacagagagagctggctgtggttcatggacctccaggcacaggaaaaaccacc
acagtggtggagatcatcctgcaagctgtgaaacaaggccagaaggtcctgtgttgtgcc
ccctcaaatgttgccgttgataatttagtggagaggcttgctcgctgtaaggccaaagtc
ctgagactgggccaccccgccagactgctggaatccatccagaaacactcactggacgcc
atcctcgctcagagcgacaacgcaaacatcatcgccgacattcggaaagatatcgacaaa
gcattggtggggatgaaaaagaaaagcgaaaaaggagagcgaggaaactttaaacgtgaa
ataggagagctgaggaaagagctgaaaaacagggagacagcagccattgctgagatcctg
aagagtgcggatgttgtgttgtccacaaacactggtgcatgtgacgacggtcctctgaag
ttcctgccggcagagcattttgattgggtgatgatcgatgagtgtgcgcaggccctggag
agcagctgctggattgctttactcagggcgcgtaaatgcatcctggctggagactacaag
cagttaccaccaaccatcaaatcacaaaaagctgcagctaaaggcctgtccctgagtctc
atggagagacttattcagatgtatggggactcagtggtccgtatgttaacagttcagtac
cgcatgaacagtgctatcatggaatgggcctccaaagagatgtacaatggacgattaacc
gctcacagctccgtggagaaacatttattgaaagatctgccgggtgttgcctgcgtcgaa
gagaccagcacaccacttcttctgattgacaccgcagggtgtggtctgagcgaaatggag
atcgcagacgagcagtccaaaggcaaccaaggtgaggtcgacattgtttcactgcatata
aagagcttgacggaagctggagtaaaggctaaagacattgctgtgattgctccgtataat
ctacaagttgatcttctgcgtcagaagctttctgcacgtcacccagagatggaaataaag
tctgtggacggatttcagggcagagaaaaagaagctgttgtgctgtcgttagttcgctcc
aacagaaaaggtgaggtgggttttcttgcagaggacagacggataaatgtcgccgtcaca
cgcgcaagacgtcacatcgccgtagtgtgcgacacgcagacagttgggaatcacgctttc
cttaaatctctggtcgatcatatggccgtgttcggtgaggtcagaactgcattcgagtac
ctgcaagatattgtgccgcagaactacaccagggatcataaagccacaaagaccaacact
tcctccacgtctagcaagcagaagagtagagatcacggtccaggtaaaccaaaggaaggc
cagaaaacgaccagcagctctaaggacaacacagctggttcacagaatcacacaaagtcc
cacacaccagcccagaaagaccaaaaagacaagagcagatacgctgagatcagactgcaa
gtggagaatttcatgaaggatgtaaatatgaagaatttacatttcccatcatccttcaac
tcccacgatcgcctgctggtccaccagatcgctgaggagctgggcctcgttcatgagagc
agaggcgagggcggcggcaggtgcatcaccgtctcccggcccgtggcattggaacctgtc
gaggagccgacgcaggaggaaacccaagaggaagaaccagctcctgctctgcagagtgag
ccgccaccatcccaaccgttagtagatctgaagacgttacatctggagagaatgcaacgg
gagcagcagaagagggaggaaaacgtccagcaaaaaaagcagcagaactgcaaccctgca
gctcagggagcaaagaagtctaaaggtttgtctcaaaccatcgggaagtgtttcaactcc
acgtctgcttacaggataactctggattatttcccctcaggaaagaacaaaacgaaggca
ggggcctgtgacatcgctgctgccgccgttccagatgatgactttgatgctctcatcagc
gctgtcgtgaaggcagacagtgtttgcagttttgtgaaatgcaaagcatctgtgttaaca
ctcggccagctttgcatcttctgcaaccggcagttctgtctcagtcatcacataccagag
gttcatggctgtggagatgaggcaaagtctcacgctcggatgagaataagcaaagagggg
gttctttatgccgggagtgggaagaaagacaaatcgttggaccctaataagaaagtgtac
ctacaaagaaaactggactccaagctgaaagatatggcatcacaaaggaaaccaaagaac
aaggagaaggacacttaa
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