Xiphophorus couchianus (Monterrey platyfish): 114153992
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Entry
114153992 CDS
T05908
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
114153992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xco03009
]
114153992
Ribosome biogenesis [BR:
xco03009
]
Eukaryotic type
Pre-60S particles
RNases
114153992
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
REX3_middle
TBCA
KIX_2
Motif
Other DBs
NCBI-GeneID:
114153992
NCBI-ProteinID:
XP_027888504
LinkDB
All DBs
Position
12:complement(7264904..7277005)
Genome browser
AA seq
1127 aa
AA seq
DB search
MFPSSGLFIHINCPFSLRGLCERPHCLYKHATESRGTFGGLYKSPVVDLTGDQCDSNFTT
VNDNSLHALERLDKEIESVRHEVEQEQRRLSSYRTNQAGKSSNKLSTKFETNLSYGFSSS
KNHKSHVQAKKYVVDNSKPRTDLEYDPLSNFSAALHSYSSSGKEVKSRPDGESSRSFGEK
PSTHQTQMHPPQSPEILDDDSTEDGVLVIDVSLSPDKTLDQTQHTADLGKSFQNTERDSK
EIKTVNVYLDSQPQMVKTKVVNAASCDDASKVPEIHPVSSTFDKTKYCSNDDGNVVDLTG
CLEEFERECENTGFQSPERKKKRTELGGFSFPSDQPSNPLIELTYKVQKKDLKSQTSLAC
KRSDPTTQLKQTSIMDQDKLQVLNQLCCLQNGEKTKTKVFTNQKQVEAAQGSGQIQIHKV
TSVNRHSRSDSTEQLLQEEDEAVIIIDSSPEDEDHEDEDNYSELSESDPMEECYRIFMES
NAEEQSGASIRAEVEKPEVNDATQTLTGRKRLAHEAKNSEQPLAKMRPQPQVLVPLREPG
ASGFVSRPSICSKVQQVPYRASAAPAKPGQNLLSSVSQKTPEMQTVPAASTPIQKNLQSY
PGQKAYLNCVPLGTAVIEVESDLHLILPQGRFPLSATSSSSPVSSVLTPVSRVHPNPNAV
RQTAAPAAISAPPRYRSTAPLLIAAPPRRPAVSTAFGSSVQATVGASTASQAATQAAVKP
LPVKRKLKQQSEAAKDKVPHDVRQRYVNMFTEEFLKTTADVNEAFEKALTEEKSVYNRSV
NKLKYLSIAVNALKRLKNQSATAKKEKQTQSQRPKGNIPFNQRKMKENAGDFVLYEILKG
YTLTDEQMIENNYPVQHPEKPGSAVLFTDKKVNTGSLKRICCRCGATYSVGKTGKHLRTE
ECNYHYGKGVTNRVPGGVETLYSCCQGVMGAPGCQIFKLHVHDYLSLDGFVSTAPRHPSD
SSCPGVYSLDCEMCYTVQGLELSRVTVTSSSLLVVYDTFVRPDNEVIDYNTRFSGISEED
VKGNHTSLREVQETLLSFISADTILVGHGLETDLCLLKLLHGTVVDTSVVFPHRLGPPNK
LSLNSLTAEYLRRIIQESVCGHDTAEDAAACMELMLWKMKEDGKLKK
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgtttccgtcctctggtctttttattcacataaactgtcctttttcgctacgtgggctt
tgtgagaggcctcattgtttatacaaacacgccacagaatcgaggggaacgtttggtggc
ttgtataaatcacccgtggtggatttaacaggggatcagtgtgacagcaattttacaaca
gttaacgacaactccctgcatgcgctggagcgactcgataaggagattgaatctgtaagg
cacgaagtggagcaggagcagcggcgcctctcaagctatcggactaaccaggcgggcaaa
agcagcaataaactctcaacaaagtttgaaacaaacctttcctatggattttcttctagc
aaaaaccataaatcccacgttcaagcaaagaaatatgtggtcgacaactccaagccgagg
actgatttagagtacgatccgctgtccaacttttctgctgctttgcattcttacagctca
tcaggaaaggaagtgaagagccgaccagacggggagagctccaggtcttttggtgaaaag
ccatccactcatcaaacccagatgcacccaccgcaatccccagaaatcctcgacgacgac
tctactgaagatggtgtcctggttattgatgtttctctgtcacctgacaaaacgttggat
caaactcaacacactgctgacttgggaaaatccttccaaaatacagaaagagactcgaag
gagattaagacggtgaatgtttatcttgactctcaacctcagatggtaaaaacgaaggtg
gtaaatgctgcttcctgtgatgatgcaagcaaagtccctgagatccatcctgtgtcttct
acttttgataaaacaaaatattgcagcaatgatgacgggaatgtagttgacttaactgga
tgtttagaagagtttgaaagagagtgtgagaatactggtttccagtcccctgaaaggaag
aagaaacggactgaacttggaggtttttccttcccctcagatcaaccaagcaatcctctg
attgagctgacttataaagttcagaaaaaagatttaaaatctcaaacttcacttgcttgt
aaacgatcagatcccaccactcaacttaaacaaacctcaataatggaccaggacaaactc
caggttctgaaccagttatgctgtttacaaaatggtgaaaaaacaaagacgaaagttttc
accaaccagaaacaagtggaggcagcacaaggcagcggccagattcagattcacaaagtt
acatctgtgaatcgacacagcagatctgactcaacagagcagctgctgcaggaggaagat
gaagctgtgataataatagactccagtcctgaggatgaagatcatgaagatgaggacaat
tactctgagctttctgaaagcgacccgatggaggaatgctaccggatcttcatggagtca
aacgccgaggagcagagcggcgcgtctattagagccgaagtggaaaaaccggaggtgaac
gatgcaactcaaactttaaccgggaggaagaggttggctcacgaagccaagaactctgag
cagccactggccaagatgagacctcagcctcaggttttggttcctctgcgggagcctgga
gcttcagggtttgtctcccggccgtccatctgttctaaggtccagcaggttccgtaccgg
gcctcagctgctccggctaaaccgggccagaatcttctttcctcagtgagtcagaaaaca
ccagagatgcaaaccgttcctgctgcttcaactccaatccagaaaaaccttcagtcttat
ccaggtcaaaaggcttatctgaactgcgtccctctgggaactgcggttatcgaagtggaa
agcgaccttcacctgatcctgcctcagggccgcttccctctctctgccacctcctcatcc
agcccagtttcatcggttctgactccagtgagtcgggtccatccaaaccctaacgcagtc
aggcaaacggccgctccagctgcgatttccgctccgcctagatatcgctccacggcgcct
ctgctcatcgctgctccgccgcgacgacctgcggtcagcacggcttttggatcgtctgtc
caggcgacagtcggcgcttccacagcttctcaagctgcgactcaggcagctgtcaagcca
cttcctgttaaacgaaaactgaagcagcaaagcgaggcagcgaaggacaaagtgcctcat
gacgtccgccagcgttacgtgaacatgttcaccgaggagtttctcaaaacgacagctgat
gtcaatgaagcttttgagaaggccctgacggaggagaagagtgtgtacaatcgcagcgtg
aacaaactgaaatacctgagcattgcagtgaacgccctcaagagactcaagaaccaaagc
gctactgctaaaaaggaaaaacagacccagagtcaaagaccaaaaggtaacatcccgttt
aaccaaaggaagatgaaggaaaatgcaggtgattttgtgttgtatgaaatcttgaagggt
tacactttgactgacgaacaaatgatagaaaacaactatcctgtccagcacccagaaaaa
cccggttctgctgttctttttactgacaagaaagtgaacacaggctctctgaaaaggatc
tgctgtcgatgtggggccacctactctgttggcaaaacggggaaacatctcagaacagag
gagtgcaactaccactacgggaaaggagttacaaaccgagttccaggtggggtggaaact
ctctacagctgctgtcagggagtcatgggagcgccgggatgtcaaatatttaagctgcat
gtccatgattacctcagcctggatgggtttgtatctacagcacccagacacccctcagac
tccagctgtcctggcgtttattccttggattgtgaaatgtgttacactgttcagggcctg
gagctgtccagagtgacggtgaccagctccagtctgctggtcgtctacgacacgtttgtc
agacctgataatgaggtcatcgactataacaccaggttttcaggcatcagtgaggaggat
gtgaaaggtaaccacacctccctcagggaggtccaagagactctgttgagcttcatcagt
gctgacactattctcgttggacatggcctggaaacagacctttgtttactgaagctgctt
catgggacagtagtagacacttcagtggtcttcccccatcgtctaggtccacccaacaag
ctgagtctcaacagcctcaccgctgaatacctcaggaggattattcaggagagtgtttgt
ggccacgacactgcagaagacgcagctgcctgcatggagctcatgctgtggaagatgaaa
gaagatggaaaactgaaaaaatga
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