KEGG   Xiphophorus couchianus (Monterrey platyfish): 114154208
Entry
114154208         CDS       T05908                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
  KO
K10570  DNA excision repair protein ERCC-8
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03420  Nucleotide excision repair
xco04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    114154208 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    114154208 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xco04121]
    114154208 (ercc8)
   03400 DNA repair and recombination proteins [BR:xco03400]
    114154208 (ercc8)
Ubiquitin system [BR:xco04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     114154208 (ercc8)
DNA repair and recombination proteins [BR:xco03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      114154208 (ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 ANAPC4_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th NBCH_WD40 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_RIG_1st WD_LRWD1 Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_WDR75_2nd
Other DBs
NCBI-GeneID: 114154208
NCBI-ProteinID: XP_027888881
LinkDB
Position
12:complement(11787364..11799934)
AA seq 401 aa
MLGFLSARQAGVDDPLRLRRAESTRRVLSLKLNPDRDVDRIHGNGINTIDIDAIEGRYML
SGGADGVIVIYDLENHSGKQQYTCRPVRTVGRSSRHVHKFSVETVQWYPYDTGMFVSSSF
DKTMKVWDTETLKPAEAFEFEGNVYSHHLSPIARKHSLIAVGTKNPKIQLCDLKSGSRIH
VLQGHRAEVLAVRWSPRYENILATASADSKVNIWDVRRASGSLFTLDQHNGEKSKASSQA
ENTAHNGRVNGLCFTSDGLYLLTTGTDDRMRLWNSATGENTLVNYGKVCNESRKRLQFSV
SHGCSPEFVFVPCGSSVAVYALHTGELITMLRGHYNNVDCCEFHPDYQELYSGGKDGNLL
AWVPVVRTADVEEEPNGENKVAASLSAVNPAFQDNWSSDED
NT seq 1206 nt   +upstreamnt  +downstreamnt
atgctgggattcttatcagcaagacaggccggtgtggatgaccctttgcgacttagacgt
gctgagtcaacgagaagagtcctcagtttgaagctaaatcccgacagagatgtggaccgg
atccatgggaatgggattaataccattgacattgatgcgattgaaggcagatatatgttg
tctggaggggcagatggagttattgtcatctatgacctggagaaccacagtgggaaacaa
cagtacacctgccgacctgtccggactgttggaaggtcaagtcgacatgtccacaaattc
agtgtggagacagttcagtggtatccttatgacacaggaatgtttgtctctagttccttt
gacaagaccatgaaagtgtgggacacagagactttaaagccagctgaagcgtttgagttt
gaggggaatgtctacagtcaccacctatcacccattgccaggaagcacagtctcatcgca
gttggtaccaaaaaccctaaaattcaactttgtgacttgaagtctggttcacggatccac
gttcttcagggtcacagagcagaagtactggccgtgcggtggtcgccaagatacgagaac
atcttagcaactgccagtgcagacagcaaggtgaacatttgggatgtgcggcgagcttcg
ggtagtcttttcactttggatcagcacaacggagagaagtcgaaagcttcatcacaagca
gaaaacacagcccataatggcagagtgaatggtctgtgttttacttctgatggcctttac
ctcctaaccaccggcacagatgaccgcatgaggctatggaatagcgccacaggggaaaac
acactggtgaattatgggaaggtatgcaatgagagccgtaaacggctgcagttctccgtg
tctcacggctgcagcccagagtttgtgtttgtgccatgcggcagctcggtggcagtgtac
gcgctgcacacaggagaactgatcactatgctgcggggtcactacaacaacgtggattgc
tgcgagtttcacccagactaccaggagctgtacagcggaggtaaagacggtaacttgctg
gcgtgggtacccgtcgtccgtaccgcagacgtggaagaagagcccaatggtgaaaataag
gttgctgccagcctgtctgctgtgaaccctgcctttcaagacaattggagcagcgatgaa
gattaa

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