Xiphophorus couchianus (Monterrey platyfish): 114154252
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Entry
114154252 CDS
T05908
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114154252 (vps13a)
Membrane trafficking [BR:
xco04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
114154252 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
114154252
NCBI-ProteinID:
XP_027888978
LinkDB
All DBs
Position
12:complement(15564802..15610110)
Genome browser
AA seq
3278 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLKNLEIKENALSQLDLPFKVRAG
HIGRLELKIPWTDIYNQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRDLDRIEE
TKLKAAEQENTKLEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDITNPNCPLSFGVSLK
NLSLQTADNYWKPSLLDEHSKLFFKLVQLNNLFAYWNVNSVLFSNHSPDEALRCLQNSME
IKPSVPVSHDFIFRPISANAKLRMNPRSDVDFSSPKVDLMVNLSEVAIELNKPQYISILE
LLGSVDMMSRNLPYRKYRPQVHVHRNARIWWKYVITGILEVDVKPHLHMWSWQHIRCHRE
TVKCYRGLYKKKITSKKPSVELLEKLEATQKSLDIFNITLARQQAEVEASKAGLRIYRPG
KQMEEEESQGWFGWMWNWGGEAEAQTKEVKTGTFDGLFTVDEKAKLYTAIGYSETAANPN
LPKNFEAMKVNFHMEKLSVSIKDQKDKNEIIKLTVEELKSTLTQRPGAQAIKVTAQLSLF
EVTGLATKRPAPTLLSSRKAATGAGTPLFCILFETNPLDDSANQRLHVESQPLEIIYDAI
TVNNMSEFFRPPDDLQLDELTNATLMKLEQFRDRTSTGLLYVIETQKVLDLKVNLMASYV
IIPQTGFYDGTQNIVLLDLGHFKMSSSSKKDLPQLSVGSSKIEDIMSRAYDNFDVQLSSL
QLLYSKPDGDWKRARKQKRSPLHILEPVDMKVVVSRAMVVSDTRMAKYKMFGELPLLSLR
ISDNKLRNVLELVDSIPLPESRPAARSTTTSIRPKQSFTPQLTARKHLSLVDQRSSIIFE
SCESISIASLGSQEDLFYDAPSSPIGEKAFFPDNPMPLRYADLSKRTNLIKEDPQKNMTD
FIMRFEINELSVQLCRLSGAQEIVVLQLDIEGLGTELKLRTFDMTSNTFLREICLKCPEY
MDSEDKQVQLITTLDNSEVDLLTLEYIKADKNGPEFKSQHNNTEQLIKVTFSSLDVHLHT
EALLNTMSFLSNLLPPSSKKEGGPEELPTIPEEEEAEAGKEEEKKGETAVTKKKTSKSSK
FADMVNLRVRADLRCLKVFIRGQKARISEISIEGLVTDVMMRKKNMEILANLKSIVILDC
NKDALYKKAVSIADKQVFAFRMLNHTDATEGDAYLDMSNVDTSVTLEVGCIQVIFLNKFV
SSILVFINNFQEAKEALAEVTVQAAEKAASGVKELAERSTRIALDVHFNAPVIFLPQSSS
SSNVIVADLGFLSIKNRFIKQPFKSDATIPPVVDKMIMKLTDLKMYRTTYKNGKFEGETQ
LLKPVSLDLEIQRNLSANWYHSIPDIEITAHLKPMSLILCQDDMIVVLRTLSENLSEKSE
AVQPPAVLPTTDHSSDSVSNKESQGSGTTGPTSSGNTVVIAAVVETQKHSKLKTTLKLNF
KFDSMTLVLFIPKENVIQHLDCHDEQLKLAEFTLGTISTSVHMFSDSSMKASVRLSTCLL
DDKRPRIKMVTSRMMELRPGAEQNMMVEVNYRQGLDGTNIDTVVQDVYLCASMEFLLTVA
DIFLKATKEGFAQGPQAKVNTGAGEKKNINSSVTSKDLSAGPVSKMEMTVVVRNPEIVFV
ADLTRADAPALVMTTYCEVSMISGAESTMTASIKDLKVVACPFLREIRKNTVTTVLQPCQ
VHYRSSQHSAGPQAMEVDINALSLKVSPVIINTVITIQSALTPQAETPEELESPVPVDLW
EKRHWKELKLWFLEEEGDEDTKSLTPLIPQGESLKLTINSICVTLEAGVGHLTIPMLLAK
SSFHGDVKNWSTLINLYSELTLEVHYYNEMVGVWEPLLEPLEDETGERFKSWTLNLKMKK
KPVNNPTLSDEVDYNIPDYRTVTTISSKDQLNITLSKCGLTMLNNLGAAFAEAAKQTAEC
FQKDEAPFVVKNRLGLPVSVRHSEMFSPVGKQSDRHTVKLQDGESLGMDYSVTTQSDQFS
AMTSLSEKHYYIQPAPEGHTSTSVIPLIKVGRGMYSVMHKDSGVTRFLVCQISSVEGSKY
IKIRSPFQIINHFTIPFNVFEGSTYLGKASPTEEFCVPFDSYRSELSLQPTTEETAEDDG
KQFDVSEGFSYEDFFNHNPATRLQQKCRRRGDESGIMMIINMVPVKDTVTCKETGDIGEN
CDIPFVLHLWPSVLLRNLLPYPIAYKLKQQGSKDSGPEVTLGPGHSAQLHTAVINQSTLD
LRLLDYLAQDWSCEYRLQSEQEEITFIVFQSLRIDEEDVGDVLERKKPELDIAMHVQYDP
GQTVVAIHSPYWMMNKTGRLLQYKADDIHRKHPLDYDMPLLFSFKPRNFLRNNKVRLMIS
DSELSDDFSLDTVGSHGDVKCKGRYKDYLVGVKIDASSFSLTRIVTFVPFYMLVNRTKHR
VFVCEEGLENWTQAEPEQSAVPFWPENDTKRLKIKLEGCLAPPQTINFTKRENCLLLHLD
NSVGGIIVDVNLSDHSATIRFSEYHDGAAPFLLINHTNERLQFRQSTLKETSWVPDELLD
LSSSGEEDSSLKELEWENLEAGKAVYYTWTEPTGSRELSWKHGRYHGELKVEKELLDEKT
NRERKLYVIPFYEGLQRVVVFTENQRIFKKLLENESLRHAEQEVILWLHDMGISLVNNNN
SQEISFIGITSSDIVWEIKPKKRGRWKTLNTEEVEMIENRFKEYCDSSPIDNCIANMENN
FQVCFTPSGTDMHMMQPVAAPLRRHHLPGVKVEYSISPRQRSYRVQIHRIQIQNQIPGAI
FPFVFYPIKLPKSIAKDTEPKPLIDLSIVTRTAGHTDISRIKYFKVLIQEMDLKLDLGFL
YAILDFVTPENAGAITSEQEVELFAKDIEYIRTELNHVSSTDTSPISLYEQFHISPIKLH
LSFSLSTGGEDGLKEKRETELIPIQSLNLLLKSIGATLTDVQDVVFKLGFFELNFQFYTT
QQLQSEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEE
FIEGMTIGVKALVGGAVGGIAGAASRITGTIAKGVAAITMDEEYQQKRREAMNKQPTGLK
DGLARGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAIARPTGGIIDLA
SSTFQGIKRAAETSQDVISLRPPRFIHEDGVIRPYKEREGVGSQMLQTIENGRFAKYRYF
AHAKINDSDFFMITKRGIFFVTKGTFGQLTCEWQYLFEEFTMDPKIVGGRRLRIEAKERV
KSVFHAKEFGKIINFKTPEIAQWVLNKLEDARDRLPKY
NT seq
9837 nt
NT seq
+upstream
nt +downstream
nt
atggtctttgaaagtgtggtcgttgacgtcctcaaccggtttttaggggactacgttgtg
aacctggacagctcgcagctgaagcttggcatatggggaggtgatgctgtgctgaaaaat
cttgaaataaaggaaaatgccttgagtcaacttgatctcccttttaaagtgagagctggt
cacataggacgtctcgagttaaaaattccatggacggacatctacaaccagtcagtggag
gccacgctagatggagtctatctgctaatcgtccccacagcaagtataaagtatgatgca
gaaaaggaggagaagcagctacaggaggctcgtcagagggatcttgatcgaatagaggag
acaaaactcaaggctgcagaacaagagaacacaaagctagagaaacaggacacctttgtg
gaaaagcttgtcacacaagtgatcaaaaacctacaggtcaagatctctaacatccatgtt
cgctatgaggatgatatcactaatccaaactgtcctttgtcatttggagtgtcgcttaaa
aatctcagccttcaaacagctgataattactggaaacccagtttgctagatgaacactcc
aagcttttcttcaagttggttcagctgaacaacttgtttgcctactggaatgtcaactcg
gttctcttctctaatcacagtccagatgaagccctgcgatgtcttcagaacagcatggag
atcaaaccctctgttcctgtcagccatgacttcatctttcgtcctatatccgcaaatgca
aaactgcgaatgaatccaagatcagatgtggatttctcttctcctaaagtggacctgatg
gtcaacctcagtgaagtggctattgaactcaacaaacctcagtacattagcattttggag
ctgctgggctcagtggatatgatgtcacgaaatctgccatacaggaagtacagaccccag
gttcacgttcacagaaatgctcgcatatggtggaaatatgtgatcacaggcatcttggag
gtggacgtgaagcctcatctccacatgtggtcatggcaacacatccgatgccaccgggaa
acagtgaagtgttacagagggctctacaagaagaagatcaccagcaaaaagcccagtgtg
gagctgctcgaaaagttggaggctacacagaaatctttagatattttcaacatcacattg
gcgagacaacaagctgaagtggaggcgagcaaagcaggactgcgtatttatcgtccaggg
aaacagatggaggaggaggagtctcagggttggtttggctggatgtggaactggggagga
gaggctgaggcacagaccaaagaggtcaaaactggaacatttgatgggttgtttactgtg
gatgagaaagccaaactttacactgccatcggatacagtgaaactgcagctaaccccaac
ctgccaaagaactttgaagcaatgaaggtaaatttccacatggaaaaactgtctgtgtcc
atcaaagaccagaaggacaaaaacgaaatcatcaaactgactgtggaggagctcaagtcc
acactcacacagagacccggagcacaagccattaaagtcacagcccagcttagtttgttt
gaggtcactggtctggccactaagcgtccggcaccgaccctcctttcatcgagaaaggcg
gccacaggagcaggaaccccgctgttttgcatcctgtttgagaccaatccgctggatgac
agtgccaaccagaggctccacgttgagtcacaaccactggagatcatctatgatgcaata
acggtgaacaacatgtcagagttcttcaggcctccagatgacctgcagctggatgagctc
accaacgccaccctgatgaaactggagcaattcagagaccgcacatccactggtttattg
tacgtgatcgaaactcagaaagttcttgacctgaaggtgaacttgatggcctcctacgtc
atcattccacagaccggcttttacgacggaacccagaacattgtgcttttggatcttggt
catttcaagatgtccagttcaagcaagaaggatctgccgcagctgtcagtgggttccagc
aagattgaagacatcatgtccagagcatacgacaacttcgacgttcagctcagcagcctg
cagctgctttacagcaaaccagatggtgactggaaaagagctcgcaaacagaaacggtct
ccactccacatcctggagcctgtggatatgaaagtggttgtcagcagggccatggttgtg
agcgacacacgtatggcaaagtataaaatgtttggtgaactcccgctgttgtctcttcga
atttctgacaacaaactccgaaatgttctggagctggtggacagcatcccactgcctgag
agcagacctgcagcccgcagcaccactacttctataaggccgaagcagtcattcactcct
cagctcactgcgagaaaacacctgagtttagtcgaccagcgttcctcgatcatttttgag
tcctgtgagagtatcagcatcgcctctctggggtcacaggaagatttgttctatgacgcc
cccagctctccgatcggagagaaggcgttcttcccggacaatcccatgccgctacgctac
gccgacttaagcaaaagaacaaatctcattaaagaagatcctcagaagaacatgactgac
tttataatgagattcgagatcaatgagttgtctgttcagctctgtcgtctgtcaggagct
caggagatcgttgttctccaactggacatcgagggtctgggcactgagctgaagctgcgt
accttcgacatgacgtcaaacaccttcctgcgcgagatctgcttgaagtgtcccgaatac
atggattctgaagacaagcaagttcagctgatcaccactttagacaactcagaagttgac
cttctcaccttggagtatatcaaagcggataaaaatggtcctgagtttaagtctcagcat
aacaacacagagcaactcattaaggtgacattttcatctttggacgttcatctgcatacg
gaggctctccttaacaccatgagcttcctcagtaacctccttcctccatccagtaagaag
gaaggagggccagaggagctgcccaccatcccagaggaagaggaggctgaggcaggaaaa
gaggaggagaagaagggggaaacagctgtaaccaagaaaaaaacctctaaaagctcaaag
tttgcagacatggtgaatcttcgtgtgagagctgatctgcgctgcttgaaggtgttcatt
cgaggacagaaagctcgaatatcagagataagtattgaaggtctggttactgatgtcatg
atgaggaagaagaacatggagatcctagcaaacctgaagagcattgtgatcctggactgc
aacaaggacgcgttatacaagaaggctgtctctattgcagataagcaagtttttgccttc
aggatgttgaaccacacagatgcaacagaaggagatgcctacctcgacatgtctaacgtt
gacacgtctgtcacactagaagtcggctgcattcaggttattttcctcaacaagtttgtc
tcctccatcctggtattcattaataatttccaggaggcgaaagaagccctcgctgaggtg
acagttcaggctgcagaaaaggcagcctctggtgtgaaggaactggcagagagaagcact
cgaattgctcttgacgtccacttcaacgcacctgtgattttcctcccccagtcttcctcc
tcttcaaacgtcattgttgctgatcttggcttcttgtccataaagaaccgtttcatcaag
cagccgtttaaaagcgacgctacaatcccgccggttgtggataaaatgatcatgaaactg
actgacctcaagatgtacagaaccacttacaaaaatgggaaatttgaaggcgagactcag
ctgctgaagccggtcagcctggacctggaaatccaacgaaatctttcggctaattggtac
cacagcatccctgatatagagatcactgctcatcttaagcctatgagtctgatcctctgc
caggatgacatgattgtggtcttgaggactttgagcgagaatctgtcagagaagtctgaa
gctgttcagcctccagctgttctgcccaccactgaccactcctctgattctgtatccaac
aaagagtcccagggctcaggaaccaccggacccaccagctcaggcaacacggtggtgata
gctgctgtggtcgagacccagaaacacagcaagctcaagacaacgctcaagctgaacttc
aagtttgactccatgacgctggttctgttcatccctaaagagaacgtgatccaacactta
gactgtcatgatgaacagctgaagttggcagagtttactctgggcaccatctccacttct
gtccacatgttctctgacagctccatgaaggcatcagttcgactctctacatgcctccta
gatgacaagagaccaagaatcaagatggttacctcaaggatgatggaactgcggcccggc
gccgagcagaacatgatggtggaggtgaactaccgacaggggcttgatggtaccaacata
gacacagtggtacaggatgtgtacctgtgtgccagcatggagttcctgctcacagtggca
gatattttcctcaaagccaccaaggagggttttgctcaggggccacaagccaaagtcaac
accggtgctggagaaaagaagaacattaattcctctgtcacgtctaaagacttgtctgca
ggtccggtgtcaaagatggagatgaccgttgtcgtgcgtaacccagagattgtgtttgtt
gccgacctgacgcgtgctgacgcccccgccttggtgatgaccacatattgtgaagtgtcg
atgataagtggagcagagtcaacaatgactgcatccatcaaagatctaaaggttgtggca
tgtcccttcttaagagagattaggaagaacactgtgaccactgtcctccagccatgtcag
gttcactatcggagttctcagcattcagcgggccctcaggcaatggaagttgatattaat
gctctctctctaaaggtatctcctgtcatcatcaacacagtgatcaccatccagtcagcg
ctgacgccccaggctgagactcctgaggagctggagagccccgttcccgtggacctgtgg
gagaaacgacactggaaggagctcaagctttggttcttggaagaggagggggatgaagac
acaaagtctctaacgccactcattccacagggagaatccttaaagttgaccataaactca
atctgtgtgactctggaagctggagtgggacacctcaccatccctatgcttctcgccaag
tcctcttttcacggagatgtgaaaaactggtccacactcattaacctctacagcgagctc
actcttgaggttcactattacaatgagatggtgggtgtctgggagccactgttggagccc
ttggaggatgagacaggcgaacgtttcaaatcttggactctaaacctgaagatgaagaag
aagccagtgaataaccctactttgtcagatgaagtggattacaacattccagactatagg
acagtaactacaatcagcagtaaagaccagctcaacatcacgctctccaagtgtggactc
accatgctgaacaacctgggcgctgcatttgcagaagctgccaagcagactgcagagtgt
tttcaaaaggatgaagctccctttgtggtgaaaaacaggctgggtcttcctgtctctgtg
cggcacagtgagatgttttcccccgtcggcaagcagagcgatagacacactgtgaaactg
caggatggcgaaagccttgggatggactactcagtcacaacacagtcggatcagttctca
gccatgacctcgctgagtgaaaaacactactacatacagcctgctccagagggccacact
tccaccagtgtgatccctctgatcaaagtgggacggggtatgtacagtgtcatgcacaaa
gactcaggagtcactcggttcctcgtctgtcagatttcctctgtggagggcagcaaatac
atcaagatccgctctccttttcagatcatcaatcatttcacaataccattcaacgttttt
gagggatcgacatatctgggaaaagcttctccgactgaggagttctgtgtaccatttgat
tcatacaggtctgagctgagcctacagccaacaacagaggagaccgccgaagacgacgga
aaacagtttgacgtgtcagagggcttcagctacgaagacttcttcaaccataatccagct
actcgcctacagcagaaatgccgtcgtcgtggagatgagtctggcatcatgatgatcatc
aacatggtgccggtgaaagacacagtgacgtgcaaggagacgggagatatcggagaaaac
tgtgacattcccttcgtgcttcacctctggccctctgtcctgctccgcaatctgctgcct
tacccaattgcctacaaattaaagcaacaggggagcaaggacagtggccctgaagttacg
ctgggtccaggccactctgctcagcttcacactgcggtcatcaaccagtcaactcttgat
ctccggcttctggattatttggctcaggactggtcctgtgaatacagactccagagtgag
caggaagaaatcaccttcattgtgttccagtctctacgcatcgatgaggaagatgtagga
gatgtgttagaaagaaagaagcctgagttagatattgcaatgcatgttcagtacgaccca
ggccagactgttgtcgccatccactctccatactggatgatgaataagacagggaggttg
ctgcagtacaaggctgatgatattcaccgtaaacaccctctagactacgatatgccgctt
ctcttctccttcaagcctcgcaattttctgagaaacaataaggtccgccttatgatctca
gacagcgagctgtcagacgatttctctctcgacactgttggtagccatggcgatgtgaaa
tgtaaaggcagatacaaagactatctggtcggtgtgaagattgatgcgagcagtttcagt
ctgacccgcatcgtgacctttgtaccgttttacatgctggtcaacagaaccaagcacagg
gttttcgtctgtgaggagggccttgaaaattggactcaagcagagccagaacagtcagct
gttcctttctggcccgagaacgacaccaagcgtctgaagatcaaattagaaggatgttta
gcacctcctcagacgattaacttcaccaaacgagagaactgcttgttactgcatctggac
aactctgtgggcggtatcatcgttgatgtaaacctgtcagatcactcggccaccattcga
ttctctgagtaccatgatggggcggcccctttcctcctcatcaaccacacaaacgaacgt
cttcagttcagacagagcaccctgaaagagacctcgtgggtgcctgacgaactgcttgac
ctttcctcctcaggggaggaggacagctctctgaaggagttggagtgggaaaatctagag
gctggaaaagctgtgtattacacctggaccgagcccaccgggtccagagagcttagctgg
aaacatggacgctaccatggagagctcaaggtggagaaggaactgcttgatgagaagaca
aacagagaaaggaaactttatgtgattcccttttatgaaggcctccaacgtgtcgtggtg
ttcactgagaatcagcgtatcttcaagaagcttttggaaaatgaaagcttgcgacatgct
gaacaggaagtcatcctgtggctgcatgacatgggcatatctttggtcaacaacaacaat
agccaagagatttcttttattggaatcacaagctctgacattgtgtgggagatcaagcct
aagaagagaggtcggtggaaaaccctgaacacagaagaagttgagatgatagagaatcgc
tttaaagagtactgtgattcctcgccgattgacaactgcattgctaacatggagaacaac
tttcaggtctgttttacgccctctggtacagatatgcacatgatgcagccggtggctgct
cctctgaggcgacaccacctccccggggtgaaggtggagtacagcatctcacctcgacag
agatcctaccgtgtccagatccaccggatacagatccagaatcagataccaggagccatc
ttcccttttgttttttaccccattaaactccccaaatcaatcgccaaggacacagagcca
aaacctctaattgatctcagcattgttaccagaactgctggacacactgacatctctcgc
atcaaatacttcaaggttttgattcaggagatggatttaaaacttgacctgggctttctg
tatgccatcctggactttgttactcctgagaacgccggcgccataacttcagaacaggag
gtggagctgtttgctaaggacatagagtatataagaacagagctgaaccatgtctcttct
actgatacgtcacccatcagcctctatgagcaattccacatttcccctatcaagttgcat
ttgagtttctctctgagcacaggaggagaagacggcttaaaggagaagagagaaactgaa
ctcatccccattcagtccctcaacctgctgctgaagagcatcggagcaactctcactgat
gtgcaggacgtcgtcttcaagctgggattctttgagctaaacttccagttttacaccact
cagcagctacaatcagaggtcatcagacattactccaagcaggctattaaacagatgtat
gtgctggtgctgggcctggacgtgctgggaaatccctttgggttgataagaggattgtca
gagggcgttgaagcgttcttctatgagccctaccagggagccatccaaggccctgaagag
tttatagaagggatgaccatcggtgtgaaagctctggttggaggagctgttgggggtata
gcaggcgcagcctctaggataacagggaccatcgcaaagggagtcgctgcaataaccatg
gatgaggaataccagcagaagaggcgagaagccatgaacaaacagcctacgggcctgaaa
gacgggctggccagaggcggaaaaggattggtttctggattcgtcagtggaatcacaggg
attgttaccaaacctataaaaggggcgcagaaagagggagcagcgggcttcttcaaaggt
gttggcaaaggtttggtgggcgcgatagctcgaccgacaggagggattatcgacttggcc
agcagtacctttcagggaatcaaaagggcagcagagacctctcaagatgttatctctctc
cgtcctcctcgcttcatacacgaggacggtgtcatccgaccatataaggagagagagggc
gtcgggagtcagatgctccagacaattgaaaacggacgttttgccaagtatagatacttt
gctcatgccaagattaacgattcagacttcttcatgatcaccaagagaggaatatttttt
gtgactaaaggcacctttggtcagctgacctgcgagtggcagtatctctttgaagaattc
acaatggacccaaagattgttggtggacgtcgactgcgaattgaagccaaggaaagagtg
aaatcagtcttccatgccaaagagtttgggaagatcataaacttcaaaactccagagatt
gcccagtgggttctcaacaaattggaggatgccagagatcgtttacctaaatactaa
DBGET
integrated database retrieval system
