Xiphophorus couchianus (Monterrey platyfish): 114154255
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Entry
114154255 CDS
T05908
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03030
DNA replication
xco03410
Base excision repair
xco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114154255 (pole)
03410 Base excision repair
114154255 (pole)
03420 Nucleotide excision repair
114154255 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xco03032
]
114154255 (pole)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114154255 (pole)
Enzymes [BR:
xco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
114154255 (pole)
DNA replication proteins [BR:
xco03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
114154255 (pole)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
114154255 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
Sigma70_ner
APP_N
zf-RRPl_C4
Motif
Other DBs
NCBI-GeneID:
114154255
NCBI-ProteinID:
XP_027888993
LinkDB
All DBs
Position
12:17524304..17542251
Genome browser
AA seq
2294 aa
AA seq
DB search
MVLQNSGRYKSDRRQSGANQENQDDGSSMSALKRLERSQFTDDMDARFGFDRMKEPGEKT
GWLINMHPTEILDEDKRMISAVDYYFIQEDGSRFKVALPFKPYFYIATKKNCEREVISYL
SKKFQGKVAKLEILPKEDLDLPNHLVGLKRSYIKLSFNTVDDLVKVKREISPAVRKNRER
EQSNDAYTSMLSSALSGGSVISADEDGTLKSIADQLDNIVDMREYDVPYHVRVSIDLKIH
VAHWYNVRYRGSAFPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYM
IDGQGFLITNREIVSENIEDFEFTPKPEYDGPFTVFNEDDEAALIQRWFDHVQETKPNIF
VTYNGDFFDWPFVETRAALHGLSMHREIGFQKDNQGEYKSSQAIHMDCLRWVKRDSYLPV
GSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQIFNKLTDDGHVLDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTMRHAVEEEEKIPLEQVTNFSEV
CDEIKKKLTSLKDVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCASCDFNKP
GATCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKFPPLFPNGPPRAFHTLNREEQAKHE
KKRLADYCKKAYKKTHVTRLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
STAQDNGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNDKKPKVTISYPGAMLNI
LVKEGFTNDQYHELVDPTALTYNTRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYSSVAKVADYWLDVLYS
KAANMPDAELFDLISENRSMSKKLEEYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMPSLHDLDIRTILDWSYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQIAHQP
LEAGQAADMEDFGAAPRPLQPAILISTKRKRASQGEDSQVESQDVELTLSWREILGPPPP
TGKTREERLVWLRYHKKKWELQLRQRKEKKKRRKLLDGEPQPVGGGVIRGGPSTGLGNFL
RRTARSILDMPWQIVQIAETNHPGLYKLWAVIGNDLHCMKLNIPRVFYVNQKVPKQDEGG
VAYRKVNRMLPRSNIVYYLYEYSVPEDMYQNHINEINADLSAPDIEGVYETQVPLLFRAL
VQLGCVCMVNKHIVRDLAGRETDSFDLEHLDMRSLAQFSYLEPGSVRHMYLYHHSQGQKA
LFGLFIPSQRKASIFILDTVRSNQMPNLSNVYTAERTALLEKTSEELLPPEKHTFEVRAE
NDIKAVSRALQRILLNYKDERRGPTLIAVQSNWELQRLAAGMPVLEEFPVVPVHVVDEIN
YNVLDWQRHGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLR
KHNHLLWLSPTARPDLGGKEADDSRLVMENDEKGSVEINSQGCYSTACVELDLQSLAVNT
ILQSQHVNDMEGGASLGVSFDVIQQASLEDMMSGNQGASALASYDETALCSNTFRILKSM
VVGWVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLHNMMKKVFLQLVAEFKR
LGSTVVYGNFNRIILCTKKRRIDDAIAYVEYITKSIHSREIFHSLSISFSRCWEFLLWMD
PSNYGGVKGKLPSSILYGEEGAKQKKRKQGEEDEEGSEDEDEDDAEEDDGDAETDEVEEL
IESNWNVMHYLPQTASCQKYFLMIVSAYIAAVYHSMKEELRRNAPGATPVKRRAGSQASQ
QAVGDLSALPGMISFSQEYVASELTQNIFTITQKIQKKVTGTRNVTQTSEMFPVLPGSHL
PLNNPALEFVKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSEEAQFRDPCNSYILPE
VICHHCNFCRDLDLCKDPTVAQDGSVLPQWFCSNCQMQYETESIETALVDALQKKLMSYT
LQDLVCTKCKGVKEANMPLYCACAGNFDLTFSAKSFSEQTAVFRNIASHYNMRFLGETID
WLLEMSPQIGQSRH
NT seq
6885 nt
NT seq
+upstream
nt +downstream
nt
atggttttgcagaacagcggacgatacaaatcggacaggcgccaaagtggagcaaaccaa
gaaaaccaggatgatggatcctccatgtcggcgctcaagcggctggagcgcagccagttc
accgacgacatggacgcccgcttcggcttcgacaggatgaaggagcccggggagaaaacg
ggctggctgatcaacatgcaccctactgagattctggatgaagacaaaaggatgatcagt
gccgtggactattattttatccaggaggacgggagcagattcaaggtggctcttcccttc
aagccttacttctacatagctactaaaaagaactgtgagagagaggtcatctcatatttg
tcgaagaagttccaaggaaaagtggcgaaacttgaaattctcccaaaggaggacttggac
ctgccgaaccatctagttggactgaagagaagctacatcaagctgtcattcaacacagtg
gacgatctagtcaaagtcaagcgtgagatttctccagccgtacgcaagaacagagagagg
gagcagtccaacgacgcctacacatcaatgttgtcaagtgctctgtcaggaggcagcgtg
atctcagccgatgaggacgggacgttgaagagtatcgctgatcagctggacaatatcgtg
gacatgagagagtacgatgtcccttatcacgtccgagtgtccatcgacctcaagattcat
gtggctcactggtacaacgtccgataccgaggcagcgccttcccgccagagattgtgcga
cgagacgatctggtcgagcgcccggacccagttgttctggcttttgacatcgaaaccacc
aaacttcctctgaaattcccagacgcagagacggatcagattatgatgatctcctacatg
atcgacggacagggctttctaatcacgaatagagagattgtctccgagaacatcgaggat
tttgagttcacccccaagccagaatatgacggacctttcacagtttttaacgaggatgat
gaggctgctctcatccagaggtggtttgatcacgttcaagaaacaaagccgaacatcttt
gtcacctacaacggagacttttttgactggccttttgttgagactcgcgctgcactccat
ggactgagcatgcacagggaaatcggtttccagaaggacaaccagggagagtataaatcc
agtcaggccatccacatggactgcctcaggtgggtaaaaagggacagctacttgcctgtg
ggaagtcacaacctgaaggcagcagccaaggctaaactgggctatgacccggtggagctg
gacccagaggaaatgtgccgaatggccactgaggaacctcagaccttagcaacctactct
gtgtcagacgctgtggccacatactacctctacatgaaatatgttcaccccttcatcttc
gccctgtgcaccatcatccctatggagcctgatgaggtgctgcgtaaaggttcaggcacc
ctgtgcgaagccttgctcatggtgcaggccttccacgccaacatcgtcttccctaacaag
caggagcagatctttaacaagctgacggacgacggccacgttctggactctgagacttac
gtgggaggccacgtggaggcgctggagtctggagttttccgcagtgacatcccctgccgc
ttcaagatgaacccggctgccttcgactttctgcttcaaagagtcgagaggacaatgcgt
cacgccgtcgaagaggaagaaaagattcctctggagcaagttaccaactttagcgaggtt
tgtgatgaaatcaaaaagaagctaacctccttgaaggatgtcccaaacaggatcgaatgc
cctctcatctaccatctggacgtcggggccatgtaccccaatattattctcacaaaccgt
ctgcagccatcagctatggttgatgaggccacatgtgcttcctgtgactttaacaaaccc
ggggccacctgccagaggaggatggcctggcagtggagaggagaaatcatgcctgcaagc
cgcagtgagtttcaccgcatccagcagcagctggagtcggagaagttcccacctctcttc
cccaacggccctcctcgggcgttccacactctgaaccgggaggagcaggctaaacacgag
aagaaacggctggcagattattgcaagaaggcctacaagaagactcacgtcacgcggctt
gaggagcgagttaccaccatatgtcagagagaaaactccttctacgtcgacacagtcaga
gctttcagggatcgccgttatgaattcaaaggacttcacaaagtgtggaagaagaagctg
tcaacagctcaggacaatggagatgctgctgaggtgaagcgctgcaaaaacatggagatc
ctgtacgagtctcttcagctggcccataaatgtattcttaactctttctacggctacgtc
atgagaaaaggggcgcgctggtactccatggagatggctggcatcgtgtgcttcactgga
gccaacatcataactcaggccagagaacttatcgaacagatagggaggcctctggagctg
gacactgatggaatctggtgtgtcctccccaacaccttccctgagaactttgtggtaaaa
accagcaatgataaaaaacctaaagtgaccatctcttacccgggggccatgctcaacatc
ctggtgaaggagggattcaccaatgatcagtaccacgagctggtcgacccaacggcgctc
acttacaacacccggtcagagaacagcatcttcttcgaggtggacggaccgtatctggca
atgattctgcccgcctccaaagaggaagggaagaagctgaagaagaggtatgccgtgttt
aacgaggacggctcattagctgagctcaaaggctttgaagtgaagaggagaggagagctt
cagctcattaagatttttcagtcctctgtgtttgaggcattcctcaaagggaccactctg
gaggaggtctattcttcagtggccaaggtggccgactactggctggacgtgctttacagc
aaggctgccaacatgccggatgcagagctgttcgacctgatctcagagaaccgctcgatg
tccaagaagctggaggagtacggcgagcagaagtccacgtccatcagcacggccaagagg
ctggccgagttcctgggagaccagatggtgaaagatgctggtctgagctgtcgctacgtc
atctctcggaaaccagaaggttccccagtcacagaaagggccattcctctggccatcttc
caggctgagcccagcgtgaagaaacatttcctccggaagtggctgaagatgcccagcctg
catgacttggacatccgcactatcctcgattggagctattacatcgagaggttgggtagt
gcaatccaaaaaattatcaccatccctgcagcgctgcagcaagtgaagaatccagttccc
agagtgaggcatcctgactggctccacaagaaactcctggagaaaaacgacatctacaag
caaaagaaaatcagcgaactgttcaccagtgagggcaagagacagattgcccatcagccc
ctggaggctggccaagctgcagacatggaggactttggggcggcacctcgacccctgcag
cccgctatcctcatcagcaccaagagaaagcgggcttcgcaaggagaggacagccaggtg
gagtcccaagatgtggagctcacactgtcctggagggaaatcctgggacctccacctcca
acgggaaaaacgcgggaagagcgactggtgtggctgcgctatcacaagaaaaagtgggag
ctgcagctgaggcaaaggaaggagaagaagaagagaaggaagctgctggatggagaacca
caaccagtcggaggaggagtcattagaggtggccccagcaccgggctgggaaacttcctg
cggcggacagcgcgcagcatcctcgacatgccgtggcagattgtgcagattgcagagacc
aaccaccctggtctgtataagctgtgggcagtgattggaaacgatcttcactgcatgaag
ctcaacatccctcgcgtcttctacgtcaaccagaaagtcccaaaacaggacgaaggagga
gtcgcgtacaggaaggtgaaccgcatgctgcctcgctccaacattgtgtactacctgtat
gagtactcagtgccagaggacatgtatcagaaccacatcaatgagatcaacgctgacctc
tctgctccggacattgaaggagtctacgaaacacaggttcccctgctgttccgtgcgctg
gtgcaactgggatgtgtgtgtatggtaaacaagcacattgtgagggatctggctggcaga
gagactgactccttcgatctggagcatctggatatgagatctctggcccagttcagctac
ctggaacctggaagcgttcgccacatgtacctgtaccatcacagccaaggccagaaggct
ctgtttggcctcttcatcccctctcagcgcaaagccagcattttcatcctggacacagtc
agaagtaaccagatgcccaacctgagtaatgtctacacagccgagcgcaccgccctcctg
gagaagacgtcagaggagcttctgcctccagaaaaacacaccttcgaggttcgagctgaa
aatgacatcaaggctgtatcccgagctttgcagcgcatcctgctaaactacaaggacgag
cgacggggacccaccctcattgctgtgcagtctaactgggaactgcagcgactggcagca
gggatgcctgtgcttgaggagtttccagtggttccagtacacgttgtggacgagatcaac
tacaatgtgctggactggcagcggcacggagcccggcgcatgatccgccattacctcaac
ctggacagctgcctgtcgcaggcttttgacatggccagatattaccaccttcctgtgggg
aacctgcctcaggatgtgtcgatcttcggctcagacttgttcctagcgagacatctgcgg
aaacacaaccacctgctgtggctttctcccacagcgagaccagaccttggaggaaaagag
gctgacgacagtcgtttggtcatggaaaacgatgagaagggttctgtggagataaactct
cagggatgttactctacagcatgtgtggagttggacctccagagcctggcggtgaacaca
atcctccagtcgcagcatgtcaacgacatggagggcggagccagtctgggcgtcagtttt
gatgtgatccagcaggcctcactggaggacatgatgtcaggaaaccagggcgccagcgct
ctcgctagctacgacgagacggcgctctgctccaacaccttcaggatcttaaagagcatg
gtggtcgggtgggtgagggagatcacacagtaccacaacgtatatgcagacaaccaggtg
atgcatttctaccgctggctgcgctctccgagttcgctgctctatgacccggcgctgcat
cgcaccctgcacaacatgatgaagaaggtgtttctgcaactggttgcagagttcaaacgt
ctggggtcaactgtggtgtacgggaacttcaacaggatcatcttgtgcacaaagaaacga
aggatagacgatgctatcgcctatgtggaatatatcaccaaaagcatacattcaagagaa
atcttccactctctgtccatctccttctcacgttgttgggaattcctgttgtggatggac
ccgtctaactatggcggtgtgaagggaaaactgccttccagcatcttgtacggagaggaa
ggagccaaacagaagaaaagaaaacaaggagaggaagatgaggagggcagtgaagatgaa
gatgaggatgatgctgaggaagatgatggcgatgcagagactgatgaggttgaagagctg
attgagagcaactggaatgtcatgcattatctcccccaaacagcctcctgccagaaatac
ttcctcatgattgtgtctgcctacatagctgcagtttaccacagcatgaaagaggagctg
agacgtaatgctcctggagcaacgccagtcaagaggcgcgcaggcagccaggcttcccag
caggcagtcggggacttgagtgcgcttcctggaatgatttccttctcccaggagtatgtg
gccagcgagctgacgcagaacattttcaccatcacccagaagatccagaaaaaggtgact
gggaccaggaatgtaactcagacctcagagatgtttcctgtcctgcccggctcacacctg
ccgctcaacaatccggcgctggagttcgtcaaatacgtctgtcaggtcctttcgcttgat
gccaacattgtgaatcaggtgaacaaactaaagagagacctcctgcgtctcgtggatgtc
ggagagttttcggaggaggcccagtttcgtgacccctgtaactcctacatactgccagaa
gtcatctgtcaccactgcaacttctgtcgggacctcgacctctgcaaggacccgactgtg
gcacaggatgggtcggtcttacctcaatggttctgctcaaattgccaaatgcaatatgaa
actgagtctattgagacggccctggtggatgctctgcagaagaaacttatgagctacact
ctgcaggatctggtttgcaccaaatgcaaaggggtgaaagaagccaacatgcccctttac
tgtgcgtgtgccggaaactttgacctgaccttctcagccaagagcttctccgagcagacc
gcagtgtttcgaaacatagcttcccactacaacatgagattcctgggggagaccatcgac
tggctgcttgagatgagccctcagatcggccagagcaggcactga
DBGET
integrated database retrieval system
