Xiphophorus couchianus (Monterrey platyfish): 114154605
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Entry
114154605 CDS
T05908
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04137
Mitophagy - animal
xco04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
114154605 (vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
114154605 (vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114154605 (vcp)
03009 Ribosome biogenesis [BR:
xco03009
]
114154605 (vcp)
04131 Membrane trafficking [BR:
xco04131
]
114154605 (vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xco04147
]
114154605 (vcp)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
114154605 (vcp)
Ribosome biogenesis [BR:
xco03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
114154605 (vcp)
Membrane trafficking [BR:
xco04131
]
SNARE
SNARE associated proteins
Others
114154605 (vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
114154605 (vcp)
Exosome [BR:
xco04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
114154605 (vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
RNA_helicase
NPHP3_N
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
NB-ARC
TsaE
ResIII
Sigma54_activat
NACHT
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
114154605
NCBI-ProteinID:
XP_027889657
LinkDB
All DBs
Position
12:17879839..17889743
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGESKNDDLQTAILKQKSRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLMK
GKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIRREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFKWALSQSNPSALRETVVEVPNITWDDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRISILKAN
LRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSSAAGG
SGPSHGSGGTGSGPVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgggaggggaatccaaaaatgatgacctacaaactgctattctgaagcaaaag
agcagacccaacagactgattgttgatgaatccatcaatgaagacaacagcgtggtctct
ctttctcaggccaagatggacgaactgcagctcttccgtggcgacacagttctgatgaag
gggaagaagaggcgggagactgtgtgcatcgtgctctcagatgacacctgctctgacgag
aaggtccggatgaacagggtggtccgcaacaacctgagggtccgtcttggtgatgtcatc
agcattcagccttgtcctgatgtgaagtacggaaagaggattcatgtcctccctatagac
gacacagtggagggcattactggcaacctgtttgaagtctacctgaagccatactttctg
gaggcttacagaccgatccgcaaaggtgatattttcctggttagaggcgggatgagagcc
gtggagttcaaggtagtggagaccgatccatccccctactgcatagttgctcctgacaca
gtcattcactgtgagggtgagccaatcagaagagaggatgaggaggagtccctgaatgaa
gtgggctatgacgacattggaggagttaggaagcagttagctcagatcaaagagatggta
gagctgcctctcagacatcctgcactgttcaaggccattggagtcaagcccccacgtggc
attcttctgtatggaccacccggaactggaaaaaccttgattgctagggctgtggccaac
gaaacaggagctttctttttcctaattaacggccctgagatcatgagtaagctggctgga
gagagtgagagtaacctgagaaaggcctttgaggaagcggagaagaatgctcctgccatc
atctttattgatgaacttgatgcaattgctccaaagagagagaagactcatggagaggtg
gagaggcgcatagtttcccagctgctgactcttatggacggcctgaaacagagagctcat
gtgatcgtcatggcagccaccaacagacccaacagcattgatccagctctcaggagattt
ggacgctttgacagagaagtggacattggcattcctgatgcgaccggcaggttggagatt
ctgcagattcacaccaagaacatgaaactagctgacgatgttgatttggaacaggtggcc
aatgagacccacggccacgttggtgcagatctggctgctctctgctccgaggccgccctg
caggccattaggaagaagatggacctgatcgaccttgaggacgagactattgatgctgaa
gtcatgaattctcttgccgttaccatggacgacttcaagtgggctctgagccagagcaac
ccatcagctctgagggagacggttgttgaggttcccaatatcacctgggacgatattgga
ggtctggaagatgtcaagagggagctgcaggagctggtgcagtaccctgtggagcatcca
gacaagttcctgaagtttggcatgaccccatccaagggtgtgcttttctacggtcctcct
ggttgtggtaagactctgctggccaaagccattgccaatgagtgccaggcaaacttcatc
tccatcaaaggacctgaactgctcaccatgtggtttggagaatctgaggctaatgtcaga
gagatcttcgacaaggctcgtcaggctgctccgtgtgtcctcttcttcgacgagttggac
tccatagctaaggctcgcggcggcaacgttggcgatggcggcggagctgccgaccgtgtg
atcaaccagatcctgaccgagatggacggcatgtcgagcaagaagaacgtcttcatcatc
ggcgccaccaacagaccagacatcatcgacccggccatcctgagacctggccgtctggat
cagctcatctacatccctctgccagacgagaagagcaggatcagcatcctgaaggccaac
ctgcgcaagagtcccatcagcaaggatgtggacttggacttcttggctaagatgaccaac
ggcttctccggcgctgatctcacagagatctgccagcgggcctgtaagctcgccatccga
gagagcatcgagaacgagatccgcagagagcgggagaggcagacgaacccatcagccatg
gaggtagaagaggatgaccccgtgccagagatcaggaaggaccactttgaagaagcaatg
cggtttgcccgtcgctctgtcagcgacaacgacatccgcaaatacgagatgtttgctcag
acactgcagcagagccgaggctttggcagcttcaggtttccctccagcgctgcaggtggc
agcggtccaagtcacggctctggtggaactggcagtggtccagtgttcaacgaagataat
gatgacgatctctatggataa
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