Xiphophorus couchianus (Monterrey platyfish): 114154713
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Entry
114154713 CDS
T05908
Symbol
ptch1
Name
(RefSeq) protein patched homolog 1
KO
K06225
patched 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
114154713 (ptch1)
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Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
114154713
NCBI-ProteinID:
XP_027889849
LinkDB
All DBs
Position
12:complement(12165997..12229878)
Genome browser
AA seq
1562 aa
AA seq
DB search
MASAANAPFEQENRDPDRPRITRRNRGDYTRGTPLDLEYLQRPSYCDAGFALEQISEGKA
TGRKAPLWLRAKFQRFLFRLGCYIQKNCGKFLVVGLMIFGAFAVGLRAANLETDVEKLWV
EVGGRVNQELKYTRQKMGEEAMFNPQLMIQTPREEGANILTVEALLQHLESALRASRVHV
YLYNRQWKLEHLCFKSGELVTETHFMNQIIEKLHPCLIITPLDCFWEGAKLHSGMVYLPG
ENPMQWTNFDPREFLEKLRRAHIHVDSFEDMLEKADVGHGYMDRPCLNPADPDCPDTAPN
KNSTKPFNVARALSGGCHGLSRKYMHWQEELIVGGTTKNGSGPLLSAQALQTMFQLMTPK
QMFEHFRDWDEVSHINWNEEKAAAILEAWQRRYSEAVLHSVATNSSQKVLSFTTTTLEDI
LKSFSDISVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVTLSVAAGLGLCSL
LGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVAL
TSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREERRFDI
FCCFYSPCANRVIQIEPQAYLDGADVGHYSPPPSYRTSPPSYHTPPPSYSSHSFAQQTQI
TMQSTVQLRTEYDPRTQAFYTTAEPRSQISVQPINPVQTRGNHSGDYYNNNNNVSRSSMN
SRGSNLGNNHGGSRGNGGSSGSVAFTHHCPAPTSGTCTVPQGDSASTTSHSPENNSSTRD
LLSQIGEASMGLHCLEPSCSRWTLASFAEKHYAPFLLRPTTKVVVIMLFLGLLGISLYGT
TQVRDGLELTDIVPRETSEYDFIGAQFKFFSFYNMYVVTQRAKYAQSQPLLHQLHQRFHT
IRYVLKEDNGQLPRMWLHFFRDWLQGLQQAFDKDWEAGHITVNSYKNGSDDGVLAYKLLV
QTGRRDKPINFSQLTRQRLVDADGIINPGAFYIYLTAWVSNDPVAYAASQANIRPHPPEW
LHDRTDSMPETRLSIPAAEPIEYAQFPFYLNGLRETPQFVEAIESVRAICNNYSQQGLPS
YPNGYPFLFWEQYISLRHWLLLSISVVLACTFLVCALFLLNPWTAGIIVLVLSLMTVELF
GFMGLMAIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDRHKRAVLALEHMFAPVLD
GAFSTLLGVLMLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLLPVLLSYFGPYPEVSPTD
DRSRLPTPCPESPPRVVHFSVRPHQTSGPVTNSGAATDSSDSEYSSNATVSGISQEVQNY
NLYPHRGQTQPEEQHHHLRTSRGRVARPEEERRVGSGQRHSPRQQPDPPAYTVSSFVPSQ
GCDSGLQHGNTQRNCSRDPRGQQHWQASPPAQPRMDAFETATEAGGHHTSRSYREHSAGH
SNHSSHNSQPHHHQQHHHHLPHQHTNNAPFCQPITTVTASASVTVAVHPVPFSTQGPASS
FPEYTGTDSYYPSGPEESESAFQDPHVPLYTHTGGREAKVESVELQDLELEAADTNHGQQ
AS
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctgctaatgcgcccttcgagcaggaaaacagagaccccgatcggccgagg
ataacgcggaggaacaggggggactatacccgcggcacaccgctggatttggagtatttg
cagcggccgagttactgcgatgcgggcttcgctctggagcaaatatcagaggggaaggcg
actgggaggaaagcacctctgtggctgagagcgaagttccagagattcttattcaggctc
ggctgttacatacaaaagaactgtggaaagtttttagttgtgggccttatgatttttgga
gcttttgccgtgggtttaagggcagctaatctggaaacggacgtggagaaactctgggtg
gaagttggtgggcgtgttaaccaggaactgaagtacacacgacaaaagatgggggaagag
gccatgtttaaccctcagctgatgatccagacaccgcgggaggagggagccaacatacta
acggtggaggcccttctacagcacctggagtctgctctccgagccagcagagttcatgtt
tacctttataacagacaatggaaattggaacacttatgcttcaaatcaggagaactagtc
acagaaacacattttatgaatcagattatagaaaagcttcatccctgcctcatcatcacc
cctttggactgtttctgggaaggagctaaactccactctggaatggtctatctcccaggt
gagaaccctatgcaatggaccaattttgaccccagggagtttcttgaaaagttacgaaga
gcacacatacatgtggatagctttgaggacatgttggaaaaagcggacgttgggcatggc
tacatggataggccctgtctgaaccctgctgaccctgactgccctgatactgcacccaat
aagaactcaactaagccgttcaacgtggcacgggctttgagtggtggctgccacggtctg
tccaggaagtacatgcactggcaagaggaactcattgtagggggcaccacaaagaacggc
agcggacccctactcagtgctcaggctttacagaccatgttccagttgatgacccccaag
cagatgtttgagcactttcgggactgggatgaggtttcccacatcaactggaatgaagaa
aaggccgcagctatactggaagcctggcagaggagatactctgaggcagtgctgcatagt
gtggcaacaaattcttcccaaaaggtcttgtcctttaccaccactactctggaggatatt
ctcaagtctttttctgatatcagtgttatccgggtggccagtggatacctgctgatgctg
gcatatgcgtgtctgaccatgctgcggtgggactgtgccaagtcccagggtgccgtgggg
ctggctggagtccttctggtgacgctgtctgtggcggccggtctgggcctctgttctctc
ctgggaatctccttcaatgctgccaccacgcaggttcttcccttcctggctctgggagtt
ggagtggatgatgtcttcctcctcgcccatgccttcagtgagactggacagaacaagagg
ataccgtttgaggaccgcactggggagtgtctgaagaggactggggccagcgtggctctc
acctccatcagcaacgtcacagccttcttcatggcagccctcatccccatcccagcactt
cgagctttttctttgcaggccgcggtggtagttgtgtttaacttcgccatggtgctgctc
atctttcctgccatcctcagcatggatctctacagacgagaagaaaggcgctttgacatc
ttctgctgcttctacagcccatgtgccaatcgagtgattcaaatcgagcctcaggcgtac
ttggacggagcagatgtgggacactacagccctccgccgtcgtatcgcacgtctcctcct
tcctatcacacgcctccaccgagctacagcagccacagcttcgcccagcaaacccagatc
accatgcagtccacagtgcagctcaggacagaatacgacccccgcacgcaggctttctac
accacggccgagccccggtcgcagatctcggtgcagccgatcaacccggttcagacgagg
ggcaaccacagtggtgactactacaacaacaacaacaacgtcagcagaagcagcatgaac
agccgaggcagcaacctcggcaacaaccacggtgggagcagaggtaatgggggctcctca
ggctctgtggccttcactcatcactgcccagcgcccacatccggcacctgcaccgttcct
cagggtgactcagcctctacgaccagccatagcccagagaacaacagctccacgcgggac
ctgctgtctcagatcggagaggcctcaatgggtctgcactgcctcgagccctcctgctcc
cgctggaccttggcctcttttgctgagaagcactatgcgccgttccttctgcgacccacc
accaaggtggtcgtgattatgctattcctgggcctgctgggaatcagtctatatgggacc
acccaggtgcgtgacggcctggagctgacggacatagtgcccagagagaccagcgagtac
gacttcatcggtgctcagttcaagttcttctcattctacaacatgtacgtggtgactcag
cgggccaagtacgcccagagccaaccgctcttgcaccagctccaccagaggttccacacc
attcgctacgtgttgaaggaggacaacggccagcttccccgcatgtggctccacttcttc
agggactggctgcaaggactccagcaggcatttgacaaagactgggaggccggccacatc
accgtcaacagctacaagaatggttctgatgatggcgtcttggcttacaaactgttggtg
cagacgggacgcagggacaaacccatcaacttcagccagctgactcgacagagactcgtg
gatgcagatgggatcatcaatcctggggctttttacatctacctaaccgcctgggtcagc
aatgatcctgtcgcttatgctgcctcacaagcaaacatccgtccacaccctcccgagtgg
ctccacgaccggactgactccatgcccgagacacgtctcagcattcctgctgccgagccc
atcgaatatgcacagttccccttctacctcaacgggctccgagagaccccgcagtttgtg
gaggccatcgagagcgtgcgagcaatctgcaacaactacagccaacaaggcctgccctcc
taccccaacggctacccttttctcttctgggagcagtacatcagtctgcggcactggctt
ctcctttccatcagtgttgtgcttgcctgcacctttctagtctgtgccctgtttctgctc
aacccgtggaccgctggcatcatagtgcttgtgctctctctcatgactgtggagcttttt
ggcttcatgggactgatggcaatcaagctgagcgccgtccctgtggtcattctcattgcc
tcggtgggcattggagtggagtttacggtccatgtagctctggcattcctgacagctata
ggggatcgtcacaaacgggcagtgctggcactagagcacatgtttgctccggtgctggat
ggcgccttctccactttactgggtgtcttaatgctcgcaggctctgagttcgactttatc
gtcaggtatttctttgcagtgttagccatcctgacagttcttggagtcctgaatggattg
gtccttctcccagtattattgtcatactttggaccttatccagaggtttcacccactgat
gaccgaagtcggttacccactccctgcccagagtcccctcctcgagtggtccatttctcg
gtccgtccacaccaaacttctggacctgtcacgaactctggtgcagccacagactcgtca
gactcagagtacagctctaatgccacagtgtctggaataagccaagaggtacagaactac
aacctttaccctcacagaggacaaactcaaccagaggagcagcaccaccacctccggacc
agcaggggcagagtggcccggccagaggaggaaagaagagtggggtcaggacaacggcat
tcaccgagacaacagcctgaccccccagcctatactgtgtcttcgtttgttccttctcag
ggttgtgactctggtctccagcatggcaatactcagcgaaactgcagcagggaccccagg
ggccagcagcactggcaggcctcgcccccggcccaaccgcgcatggacgcttttgaaact
gcaactgaggctgggggccatcacacctctcgcagttacagagaacactcagcaggccac
agcaaccattcttcccacaactcacagcctcatcatcaccaacagcatcatcaccacctc
ccgcaccaacacaccaacaacgctcctttttgtcagcccatcaccacagtaacggcatca
gcctcggtcactgtggccgttcaccctgtgccattttccacccaaggtccagcttcctcc
tttccagaatacacgggaacagacagttactacccatcggggccagaggagtcagaatcg
gctttccaagacccccacgtgcctttgtacacccacacagggggtagggaggctaaggtg
gaatctgtggagcttcaggatttggaattagaggcagctgacacgaaccatggccaacag
gctagctga
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integrated database retrieval system
