Xiphophorus couchianus (Monterrey platyfish): 114154849
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Entry
114154849 CDS
T05908
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03030
DNA replication
xco03410
Base excision repair
xco03420
Nucleotide excision repair
xco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114154849 (rfc5)
03410 Base excision repair
114154849 (rfc5)
03420 Nucleotide excision repair
114154849 (rfc5)
03430 Mismatch repair
114154849 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xco03032
]
114154849 (rfc5)
03036 Chromosome and associated proteins [BR:
xco03036
]
114154849 (rfc5)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114154849 (rfc5)
DNA replication proteins [BR:
xco03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
114154849 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
114154849 (rfc5)
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
114154849 (rfc5)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
114154849 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
114154849 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
AAA_24
RuvB_N
AAA_14
DEAD
AAA_16
ResIII
DUF815
AAA_assoc_2
PhoH
AAA_7
TIP49
AAA_5
AAA_19
AAA_30
ATPase_2
AAA_2
nSTAND3
Mg_chelatase
Thioredoxin_6
AAA_25
DNAX_ATPase_lid
Glyco_hydro_30C
Glyco_hydro_57
DUF4119
Motif
Other DBs
NCBI-GeneID:
114154849
NCBI-ProteinID:
XP_027890090
LinkDB
All DBs
Position
12:complement(5755629..5761048)
Genome browser
AA seq
335 aa
AA seq
DB search
MASTSKGQLQTRNLPWVEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMMPRL
EHVIQKENIDVTPDGKKAIVTLSTGDMRRSLNILQSTSMAYGKVTEHTVYTCTGHPLRSD
IANILDWCLNKDFTSAYKQVLELKTLKGLALHDILSEVHLLVHRVDFPPAIRMGLLIKLA
DIEYRLAAGTNEKIQLSSMVAAFQAVRDMVVSEAS
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacaagcaaagggcagttacagaccagaaacctaccatgggttgaaaaatac
agacctcagacactggatgatttaatttcacacaaagacattctgagcaccatccagagg
ttcatcagcgaggacaaacttccccacctgctgttctacggccctcctggaacaggaaag
acctccaccatcctcgcctgcgcaaggcagctctacaaggacaaagagtttaactccatg
gtgttggagctaaatgcatccgacgacagagggattgacgtagtccgaggtcctattctg
agtttcgccagcactaggactattttcaaaaagggcttcaagttggtgatactggatgag
gccgatgccatgacccaggatgcccagaatgcattgcgacgagtcattgagaagttcaca
gaaaacactcgattctgcctgatctgcaactacctgtccaagatcatcccagccctgcag
tctcgctgcaccaggttccgcttcggcccgctgtctccggaccagatgatgcctcgactg
gagcacgttatccagaaggaaaacattgacgtcactccagatggaaagaaggccatagtc
actctgtcgacaggtgatatgagaagatcactcaacatcctgcagagtaccagcatggca
tatgggaaggtcacagagcacacggtctacacctgcaccggccatcctctccgctctgac
atagccaacatcctcgactggtgcctcaacaaagacttcacttcagcttacaaacaggtt
cttgagctgaagactttgaagggtttggctctgcatgatattctgtctgaggtgcatctg
cttgtccacagagtggactttcctccggccatacggatgggcctgcttatcaaattagcc
gacatagaataccggctagcggcaggaaccaatgaaaagatccagctgagctccatggtt
gcagccttccaggccgtcagagacatggtggtcagtgaagcctcttag
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integrated database retrieval system
