Xiphophorus couchianus (Monterrey platyfish): 114154867
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Entry
114154867 CDS
T05908
Name
(RefSeq) PDZ and LIM domain protein 5-like isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114154867
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xco04990
]
114154867
Domain-containing proteins not elsewhere classified [BR:
xco04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
114154867
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
114154867
NCBI-ProteinID:
XP_027890125
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Position
12:14935371..14988122
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AA seq
558 aa
AA seq
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MSGNYSVTLLGPAPWGFRLQGGKDFNMPLTISRLTDGGKAAKGGVAVGDTVLSIDGVSTE
GMNHLEAQNKIKNCTGNLSLTLQKSSVSKPPPVAPKDNRTDLIKPVAITHPSVSQHPQSQ
CSAPYKKAPRPYGGCSSDGVYSPSQSPFTTFIPSPSSAFTPASSHIGPPPSPLLPPLISY
PSSASSSSSPPVLVAPQPSVYNTPINLYSTENACEVAMGQRRGLLESQGGALPHFNGKHI
VDTDIHFYHVPTHADASRKRIMEDTEDWRPRTGTTQSRSFRILAQITGTENVQNEEADAS
KKTNEGDEEAQLNSHESAVVKTMMKGTASNHGQGVQSGLITPSSVLRGPVPVRPVPQPHP
KDEDTLVQMAEHIPAGMRTPMCAHCNMVIRGPFLVAMGKSWHKEEFNCAHCRTSLADIGF
VEEKGSVYCEHCYEEFFAPTCSRCQAKILGEVINALKQTWHVYCFMCAACQQPIRNNTFH
LEDGEPYCEQDFYSLFGTGCHGCEFPIEAGDKFLEALGYNWHDTCFVCVVCCASLEGQTF
FSKKDKPLCKKHAHTVKI
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggaactacagcgtcactctgttggggccggccccttggggtttcaggctacaa
ggagggaaggactttaacatgcccctcaccatctccaggctgacggatggtgggaaagca
gctaaaggtggtgttgcagttggagacacggttctctccatcgatggtgtttccacagag
ggcatgaaccaccttgaggcccaaaacaaaatcaagaactgcaccgggaaccttagtctc
actctgcagaaatccagtgtttctaagccccctccagtggcaccaaaggacaaccgaaca
gacctcataaaaccagtagccatcacccatccctctgtttcacaacatccccagtctcag
tgctctgccccttacaaaaaggcccccagaccttatgggggttgcagctctgatggtgta
tactctccttcacagtcacctttcaccaccttcatcccttccccatcctctgccttcact
cctgcttcatcccacattggtcctcccccttcccctcttcttcctcctttgatctcttac
ccatcctctgcatcctcttcctcctccccccctgtcctggttgcgcctcagccatcagtg
tataacacaccgatcaacctctactcaactgaaaatgcgtgtgaggtggccatggggcaa
aggcggggcctgttggagagtcagggaggagccttaccacattttaatgggaaacatatt
gtggacacagacatccatttttaccatgtgcctactcacgctgatgccagtagaaagcgc
ataatggaggacacagaggactggcgtccacgcacgggcaccacccagtcccgatctttc
aggattctggctcagatcacaggcacggagaacgttcaaaatgaagaagctgatgcatca
aagaagacaaatgagggtgatgaggaggcacagcttaactcccatgaatctgctgtcgtc
aaaactatgatgaaagggactgcttccaaccatggccaaggagtacagagtggtttgatc
actccatccagtgtcctcaggggtcctgttccagtccgaccagtgcctcaaccccacccc
aaagatgaggacactctggtccagatggcagaacacattcctgctgggatgcgaaccccc
atgtgtgcccactgcaacatggtgatcagaggaccatttttggttgcaatgggaaaatca
tggcacaaggaggaatttaactgtgcccactgccgaacatctctggcagacataggcttt
gtggaagaaaaaggctccgtgtattgtgaacactgctatgaagagttctttgcaccaacc
tgcagccgctgccaggccaagatattgggggaggtaattaatgccctgaaacaaacatgg
catgtctattgcttcatgtgtgctgcctgtcagcagccaatcaggaacaacacctttcac
ctggaggatggagaaccttattgtgagcaagacttttacagtttgtttgggactggttgc
catggctgtgagttccctattgaggctggagacaaatttctggaggcgctcggttacaac
tggcacgacacctgctttgtttgtgttgtatgttgtgcctctctggaaggtcagaccttt
ttctccaaaaaggacaaacctctttgcaagaaacatgctcacacagtgaagatatga
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