KEGG   Xiphophorus couchianus (Monterrey platyfish): 114154885
Entry
114154885         CDS       T05908                                 
Symbol
sf3a1
Name
(RefSeq) splicing factor 3A subunit 1 isoform X1
  KO
K12825  splicing factor 3A subunit 1
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114154885 (sf3a1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xco03041]
    114154885 (sf3a1)
Spliceosome [BR:xco03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    114154885 (sf3a1)
 Complex B
    114154885 (sf3a1)
 Complex C
   U2 SnRNP specific factors
    114154885 (sf3a1)
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Rad60-SLD Ubiquitin_2
Other DBs
NCBI-GeneID: 114154885
NCBI-ProteinID: XP_027890156
UniProt: A0A3B5MBF9
LinkDB
Position
12:23651985..23658276
AA seq 784 aa
MPPGPVQIVQPETNNKQNDGPAEETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFE
ARIRQNEINNPKFNFLNPNDPYHSYYRHKVNEFKEGKAQEPSAAVPKVMQQQAMQQSQQL
PQKVQVIQETVVPKEPPPDFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQ
RNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLIKLKKEAENPKEVMDQVRYRVEWA
KYQERERKKEEEEREKERVAYAQIDWHDFVVVETVDFQPIEQGHFPPPTTPEELGARILI
QERYEKYGESEEVEMEVESEDEEDEREKRADGQPSQPDQDTQVQDMDEGSDDEDEGMKAP
LPPDNPMPPPLPPAPEQVIIRKDYDPKASKPQPSVAAPDEYLISPITGEKVPASKMQEHM
RIGLLDPRWLEQRDRSIRDRQTEDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIG
EEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVGEDETKEKIGPSK
PSEIHQPPPIPSSAPSLPKPSPPVTAVPRPSISVAPPVRTTLLSAVPVIPRPPVTPVVRL
APGQVITQMPPMIPAPRVNVVPMPPAPHLMAPRPPPMVVPTAFVPAPPMPQPPSAAPAPP
IHPPPPREDEPMSKKMKTEDNLIPEEEFLRRNKGPVAIKVQVPNMQDKTEWKLNGQVLNF
TVPLTDQVSVIKVKIHEATGMAAGKQKLQYEGIFIKDSNSLAYYNMTNGSIIHLALKERG
GRKK
NT seq 2355 nt   +upstreamnt  +downstreamnt
atgccgcctgggcccgttcagatagttcagccggagaccaacaacaagcagaatgatgga
cctgcagaagagactccagccactaagcccatcgttggcatcatataccctcctccagaa
gtccgaaacattgtcgacaagacggccagttttgttgccaggaatggaccagagtttgaa
gcaagaatccgtcagaatgagatcaacaaccccaaatttaatttcctcaaccccaacgat
ccctaccattcttactaccgccacaaggtcaatgaatttaaggagggcaaggcacaagaa
ccatctgcggcagtgcctaaggtcatgcagcagcaagccatgcagcagtctcagcagctt
cctcaaaaggtgcaggtgattcaggagaccgtggtccccaaagagccaccccccgacttt
gagttcattgcggaccctccatcgatctctgcgtttgatctggatgttgtgaagctcact
gcccagtttgtggctcgcaatggccgacagtttctcacccagctgatgcagaaggagcag
aggaactaccagtttgactttctgcgaccacagcacagcctcttcaactatttcaccaaa
ctggtggagcagtacacgaagatcttgatccctcccaaaggcctgctaatcaaacttaaa
aaagaagccgagaacccaaaggaagttatggaccaggtgaggtaccgtgtcgaatgggca
aaataccaggagcgtgagagaaagaaggaggaagaggagagggagaaggaacgggtcgct
tacgcccaaatagactggcatgattttgtggtggtggagacggtggatttccagcccatt
gaacaaggtcacttccctccacccacgacaccagaggagcttggcgctcgcatccttatc
caggagcgctacgagaaatacggagaaagcgaggaggtggagatggaggtggagagtgag
gatgaagaggatgaacgagaaaagcgggctgacggccagccttctcagcctgatcaagac
acacaagtccaggacatggatgagggatctgatgacgaagatgaaggtatgaaggctcca
ttgccaccagacaacccgatgccaccccccctgcctccagctccagaacaggttattatt
cgcaaggactacgaccccaaagcttccaagccgcagccctcggttgcagctccagatgaa
taccttatttcaccgatcaccggtgagaaagtccccgccagcaagatgcaggagcacatg
cgcatcggcctgctggatccgcgctggcttgaacagagagaccgaagcattagagacagg
cagacggaggatgaagtctatgctcccggtttggatattgagagcagcttgaagcagctc
gctgagaggcgtactgatatctttggtgtggaagagacggccatcggaaagaagatcggc
gaggaggaaattcagaagccagaagaaaaggtcacctgggatggccactcggggagcatg
gctcgtacgcagcaggcagcgcaggccaacatcactctgcaggagcagatcgaggccatt
cacaaggccaaaggactggtgggagaggatgaaacgaaggaaaaaattggccccagcaag
ccgagtgaaattcatcagcctcctcccatcccctcatcggcaccaagtctgcctaaaccc
agtcctcctgtcacagccgtgccacgcccatctatctcagtggctcctccagtccgtacc
actctgttgtctgccgtacctgtgattccacggcccccggtgacccccgtggtgcgtttg
gcgccaggtcaagtcattacacagatgccgcccatgattcctgctcctcgtgtcaacgtg
gttcccatgccaccagcgccccacctcatggccccaaggccaccccctatggttgttcca
actgcgtttgtccccgctccccccatgcctcaaccacccagcgctgccccagcgccgccc
atccacccaccccctcctcgtgaggacgaacctatgagcaagaagatgaagacggaggac
aacctcatcccagaggaagagttccttcgtcgaaacaagggtcctgtggcaatcaaagta
caagtccccaacatgcaggacaagaccgaatggaagctaaatggccaagtgttgaatttc
actgtcccacttacagaccaggtgtctgtcattaaagtcaaaatccatgaggcaacaggc
atggcggctggaaaacagaagttgcagtatgagggcatcttcatcaaggattcgaactct
ctggcttattacaacatgaccaatggttccatcattcatttggctctgaaggagagaggt
ggaagaaagaagtga

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