Xiphophorus couchianus (Monterrey platyfish): 114155127
Help
Entry
114155127 CDS
T05908
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04010
MAPK signaling pathway
xco04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
114155127
04020 Calcium signaling pathway
114155127
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xco04040
]
114155127
Ion channels [BR:
xco04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
114155127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
114155127
NCBI-ProteinID:
XP_027890647
LinkDB
All DBs
Position
12:32123943..32206146
Genome browser
AA seq
2324 aa
AA seq
DB search
MARFEDDASSRFRGSGPAGPARGANRQPGPPGGQRMYKQTMAQRARTMAIYNPIPVKQNC
LTVNRSLFIFSEDNIIRKYAKKITEWPPFEYMILATIIANCIVLALEQHLPALDKTPLSE
RLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILATVGADFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGMLLFFAILMFAIIGLDFYIGK
FHRTCFKNGTQEQVADFPCGLEPPARTCGKGNICKEYWLGPNFGITNFDNILFAILTVFQ
CITMEGWVDILYNANDASGNMWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEKR
QEFLKLRRQQQIERELTGYLEWICKAEEVMLAEEDKNAEEKSLDGAWYKRKHNPNSVLKR
TKKSKNDLINTEEGEDHFTDISSVAPPGSPFARASVKSKNESSSYLRRKEKRIRFTIRHL
VKSQTFYWTVLCLVGLNTLCVAIVHYDQPEWLTYALYLAEFVFLGLFLAEMTMKMYGLGP
QTYFHSSFNCFDFGVIIGSIFEVVWAAIKPGASFGISVLRALRLLRIFKVTKYWNSLRNL
VVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDTFPAAILTVFQ
ILTGEDWNAVMYHGIESQGGVHRGMFSSIYFIILTLFGNYTLLNVFLAIAVDNLANAQEL
TKDEEEQEEAISKKLALQKAKEVQEVSPMLAANISITTSYVCTPVHHYLSNEQQRSVKTM
SVWEQKASQLRRHNQASCEVLYDPEECVRLPSGLQMRPDMKTHLDRPLIVGHSDMLLMRS
HQHHRHKPGTPEEAETAADPPSTPPHSHHRHNRHRDRGRAKVKEEPNDSGGDSGKDGRQH
VHHSRFKNHDYSCRQEEKSRRSSSKDRSRKHHHHSSMDESAGGEATREREHRHHHSHRQS
RGGNGTVNGGGRGEHRLHRKDGRSSNKDGNREGKRRRHHTHGSRSQSRAEGEESNEREEP
NTNRFGDSDDISQQPGSLETSGQPEDSDNQKNVRRTGQTSIRIPPVTITTPGEITMIQMN
STDNDSVPMNEKNLKDQCHSGPRPILAYSSMFIFGQTNPVRRLCHYIVTLRYFEMSILVV
IAMSSIALAAEDPVWTNAPRNNVLKYLDYAFTGVFTFEMVIKMVDLGLLLHPGSYFRDLW
NILDFIVVSGALVAFAFSSFMGSQQAVTRGTKGKDISTIKSLRVLRVLRPLKTIKRLPKL
KAVFDCVVNSLKNVLNILIVYILFMFIFAVIAVQLFKGKFFYCTDESKALEKDCKGQFLD
YDKETVAAMPREWKKYEFHYDNVLWAFLTLFTVSTGEGWPTVLKHSVDATFEDLGPSPGY
RIEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKALSECSLEKNERACIDFAINAKP
LTRYMPEDTQSFQYRMWKFVVSAPFEYSIMIMIALNTVVLMMKFHKAPDFYEAMLKYLNI
VFTTLFSLECILKIIAFGPLNYLKDAWNVFDFVTVLGSITDILVTEIKTTDRLLNLSFLR
LFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIELNE
DTAINHHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSHRPCDELSGTSGKDCGSDFAYF
YFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRISY
MDMYNLLRIISPPLGLGKNCPNRVAYKRLVKMNMPIADDNTVHFTSTLMGLIRTALEIKL
ASGMVLQRLMDAELKKEISTVWPSLSQKTMDLLVTPHKPNELTVGKVYAALMIFDYLKQS
RARRLQQMANSDPQCKVEALFKPLLPLTHMQGSPSAPQSQQSPESFRQVVSSNSINNGGM
LPGYDPRNKSVPSTGMERPTKGVYPKPKRTISKGPSVDTSNAVNQESVGLNSVSSTVPVP
VPGPGLESQGRAASMPRLNVELQSGRDASSMRRSVTTVAPQRPQEVNLRDYTLEKPRQER
THHHHHHHHCHHRRDRDKDKRQGSLDTPLGGQPPNSAGGPEQPATEPAASRERAHKRGRS
HERKHHHSSADKQRYYSCDRYCSRERCCPISATAACSYREEQETSKKQGSGLVKGSQEAS
RSGSSTPSRGRRQLPQVPHTPRPGVGYKTAYPSQVHFVSSQASQSPGRLSRGLSEHNTLR
HSGSYYFPCPVTRISSEPFLGQGHGEALGSPYSSFQNQLDVFQDVASLSPTPSAEQSPRT
TLPRRMGALHPTFGVDPSVPNGYHLSLGGSTSPGTGYRALRYRR
NT seq
6975 nt
NT seq
+upstream
nt +downstream
nt
atggctcgttttgaagacgatgcgtccagccgcttcagaggcagcggccccgcggggcca
gccagaggggccaaccggcagccggggcctccggggggccagaggatgtacaaacagacc
atggctcagagagccaggaccatggctatttacaaccccattccagtcaaacagaactgc
ctcaccgtcaaccgctccctgtttatctttagcgaggataatatcatccggaaatatgcc
aaaaagatcacagaatggcctccgtttgaatacatgatcctggccaccatcatagcaaac
tgcatcgttctggccttggagcaacacctgccagctttggacaaaacccctctgtcagaa
cgtttggatgacacagagccctactttattggaatattttgctttgaggcaggcatcaag
atcattgccttgggttttgcttttcacaaaggctcctacctacgtaatggctggaatgta
atggactttgtggtggtcctaacagggatcctggccactgtaggggctgattttgatctg
agaacactgagagcagtcagagtcctgcggcccctcaaactcgtctctggcattccaagc
cttcaagtggtgttgaagtccattatgaaagcaatggtacctttgctccagattggaatg
ctgcttttctttgccatcctcatgtttgctatcatcggcctggacttctacattggcaaa
tttcatcgaacatgcttcaagaatggaacacaagagcaggtggcagatttcccttgtgga
cttgaacctccagcaaggacctgtggcaaagggaatatctgtaaagagtactggcttgga
cctaactttgggatcacaaactttgacaacatcctgtttgccattctcactgttttccag
tgtatcactatggaaggatgggtggatatcctgtacaatgccaatgatgcctctgggaac
atgtggaactggctctacttcatccctctcatcatcattgggtcgttcttcatgctcaac
ctggtgctgggcgtgctgtcgggagagtttgcaaaggaaagggagcgtgtggagaagagg
caagaattcctgaagcttcgtcgacagcagcagattgaaagagagctgactggttatttg
gagtggatctgtaaagcagaagaggtgatgttggctgaggaagacaagaacgctgaggag
aagtctctggatggagcttggtacaaaaggaaacataaccccaactctgtgctgaaaaga
acgaagaagagtaagaatgacctcatcaatacagaagaaggggaggaccatttcactgac
atttcatcagttgcccccccagggtcaccatttgcacgcgcgagtgtgaagagcaagaac
gagagctcgtcttacctgaggaggaaggagaagagaattcgcttcaccatccgccacctg
gtcaaatcccagacgttttactggactgtattgtgtcttgttggcctcaacacgctgtgt
gtagctatagtacactatgaccagccagagtggcttacgtatgcattatacctggccgag
tttgtgtttctgggattgttcctggctgagatgaccatgaaaatgtacggccttggaccc
cagacctacttccactcttctttcaactgttttgattttggggtcattattgggagtatt
tttgaggtggtctgggctgcgatcaaacctggtgcttcatttggtatcagtgtcctgaga
gctctgcgacttctccggatcttcaaagttaccaagtactggaactctttgaggaacctg
gtggtatccctactcaactctatgaagtccatcatcagtctgttgttcctgctcttcctc
ttcatcgtggtctttgctctgctgggaatgcagttgtttggtggacagtttaactttgag
gatgaaactccaacaaccaactttgacacattcccagctgctattctcactgtgtttcag
attctaactggggaggactggaatgctgtcatgtaccatgggatagaatctcagggtggt
gtgcatagaggaatgttttcctccatttatttcatcattctcactctttttggaaactac
acactgctcaacgtgttcttggccatcgctgttgataaccttgcaaatgcccaggagctt
acaaaggatgaagaggagcaggaggaggccatcagcaaaaagctggctcttcagaaggct
aaagaggtacaggaagtcagccctatgttggctgctaacatttcaatcacaacgagttat
gtctgcaccccagtccatcactacctgagcaatgagcagcagaggtcagtcaagacgatg
tctgtctgggagcagaaagccagccagctgaggaggcacaatcaggcgagctgcgaggtc
ttatatgatccagaggagtgtgtccgcctcccctctggccttcagatgcggcctgacatg
aagacccatcttgaccggcccctgattgttgggcattccgatatgctgttgatgagaagc
catcaacatcaccgtcacaagccgggcactccggaggaagcagagactgccgctgatcca
ccgtccactccgcctcattctcatcaccgtcacaaccgccacagagacagagggcgggct
aaggtgaaagaagagcccaatgacagcggtggtgacagtggcaaagacgggaggcaacac
gtccatcatagccgcttcaaaaaccatgactacagctgtagacaagaggagaagagcagg
aggtcctccagcaaagacaggagcaggaagcatcaccatcacagttcaatggatgagagc
gcaggtggggaggccacaagagagagagaacatcggcatcatcattcacatcgacagtcc
agaggggggaatgggacagtgaatggtgggggtcgaggcgagcacaggcttcaccgtaaa
gatggtcgatcatctaacaaggacgggaatagagagggcaagaggaggaggcatcacaca
cacgggtcgaggagtcagtccagggctgaaggagaggagtcaaacgagagagaggagcca
aatactaacaggtttggtgactcagatgacatttcccagcagccaggctctctggaaaca
tctggccagccagaggactcagacaaccagaagaatgtcagaagaacaggccagacctcc
atccgcattccccctgtgactatcaccacacctggagagatcactatgatacaaatgaac
agtactgacaatgactcagtgcctatgaatgagaagaacctgaaggatcaatgtcactct
ggaccaagacccatcttagcttacagctcaatgtttatctttggacagaccaacccggtg
aggcggttgtgtcactacattgtgaccctgcggtattttgagatgtccatcctggttgtt
atcgcaatgagcagcattgctctggcagctgaggatccagtctggacaaatgcccctcgc
aacaatgtgctcaaatatctggactatgcctttactggggttttcacgttcgaaatggtg
atcaaaatggtggatcttggactgcttctccatcctggatcttacttcagagacctgtgg
aacattctggacttcatagtggtcagtggggctctggtggcatttgcattttcgagcttc
atgggatcgcagcaagctgtgaccagggggactaaaggcaaagacatcagcaccatcaag
tcactgagggttctcagggttcttaggcctctcaagaccatcaagcgtctgccaaaactc
aaggccgtttttgactgtgtggtcaactctttgaagaacgtgctgaacatcctcattgtt
tacatcctcttcatgttcatttttgctgttattgcggttcagctcttcaagggaaaattc
ttctattgcactgatgagtccaaagccctggagaaagattgcaaaggacaatttcttgac
tatgacaaagaaacagtggcagcaatgccaagagagtggaaaaaatatgaattccattat
gataatgtactctgggccttcctaactctcttcacagtctcaactggggagggctggcca
actgttctgaaacactctgttgatgctaccttcgaagatctaggtcccagccctggctac
cgcatagagatgtccatcttctatgtggtctactttgtggtctttccatttttctttgtc
aacatctttgttgctctgataattatcaccttccaagaacagggagacaaggccttgtct
gaatgcagtttggaaaagaatgagagggcttgtattgactttgccataaatgcgaaacct
ttgacacgctacatgccagaggacacacaatccttccagtacaggatgtggaagtttgtc
gtttcagctccatttgagtactcaattatgatcatgattgctctcaacactgtggtactc
atgatgaagtttcataaagctccagatttttatgaagcgatgctgaagtacctcaacata
gtgttcaccactcttttctctctggagtgcattctcaagatcatcgcctttggtcccctg
aactacttaaaagatgcctggaatgtatttgactttgtgacagttttggggagcatcaca
gacatcctggtgactgaaatcaaaactacggacagactattgaatttgagcttcctgagg
ctcttcagagcagctcgactcatcaagttgctgaggcagggctacaccatccgcatcctg
ctctggacctttgtccagtctttcaaggccctgccatatgtgtgcctgcttattgccatg
ctgttcttcatttatgccatcattgggatgcaggtgtttgggaacattgagctgaatgaa
gacacagctatcaaccatcataacaacttccgcacttttctccaggctcttatgctgctg
ttcagaagtgcaactggagaagcctggcatgagatcatgttgtcgtgtctgagtcatcga
ccctgtgatgagctctcagggaccagtgggaaagactgtggcagtgattttgcctacttc
tactttgtctccttcatcttcctctgctccttcctgatgctgaatctctttgtggctgtc
ataatggataactttgagtacctcaccagagactcctccatcctggggccgcatcatctt
gatgaattcattcgagtttgggccgagtatgacccagctgcttgcggacggatttcctat
atggatatgtacaatttgttgcgcattatctcacccccccttggcttagggaagaactgc
cctaatagggtagcatacaagcgtcttgtcaaaatgaacatgcccatcgctgatgacaac
acagttcactttacctccactctgatgggcctgattcgcactgcgctggagatcaagttg
gcctcaggtatggtgctgcagcgtttaatggatgctgagttaaagaaagaaatatccaca
gtttggccaagcctctctcagaagaccatggatttgttggtgacgccacacaaacccaat
gagctaacggtaggaaaggtttacgcggcactgatgatctttgactacttgaaacagagt
cgagcgaggaggctgcagcagatggccaactctgacccccagtgcaaggtcgaagctctg
tttaagccattgctgcctctgactcacatgcagggctcacccagtgctcctcagtctcag
caaagcccggagtcattccgtcaagtggtcagctctaactccatcaacaatggagggatg
ctgccaggttatgaccccagaaataaatcagtaccttccactgggatggagaggcccacc
aagggtgtctatcccaaaccaaagagaaccatatccaaaggcccatcagtggacacatca
aatgctgtcaatcaggagtcagtagggctgaacagtgtcagcagcacagtcccagtccca
gtccctggtccaggtctggagagccagggcagggctgcttcaatgcctcgactcaacgtg
gagctccagtctggtcgtgatgctagctctatgagacgctctgttaccactgtagctcca
cagcggccccaggaggttaaccttagggactacaccctagagaaacctcgtcaggagaga
acacatcaccatcaccaccaccatcactgccaccaccgcagagaccgggacaaagacaag
agacaagggtctttggatacccctcttgggggccaacctcccaactcagctggtggacca
gaacagccggcaactgaacctgctgcctccagagagcgagcccataaacgtgggcgctcc
catgaaaggaaacaccatcactcctcagcagacaagcaacgctactactcctgtgaccgc
tactgcagccgggaacgctgctgtcccatatctgctactgccgcctgctcctacagagag
gagcaggaaaccagcaaaaagcagggcagtggtttggttaaaggcagccaagaggcatca
agatccggttcaagcacaccaagccgtggacgccggcagctcccacaggtcccacacacc
ccacggcctggggtgggatataagactgcatacccttctcaagtgcactttgtgtctagt
caggcttctcagagtcctggccgactaagccgtggcctgtcggaacacaacaccctccgt
catagtggttcctactacttcccctgccctgtcactcgtatcagctcagagccctttctg
ggccagggccatggtgaggccctgggcagtccttacagcagcttccagaaccagctggat
gtcttccaggatgtggcatcactgtcccctacccctagtgccgaacagtcaccccggacc
acactgcctcgaaggatgggagccctacatccaacttttggtgtagacccgagtgtgccc
aatgggtaccacttaagtttagggggcagcaccagcccaggcactggatacagggcactg
aggtacagaaggtag
DBGET
integrated database retrieval system
