Xiphophorus couchianus (Monterrey platyfish): 114155187
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Entry
114155187 CDS
T05908
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114155187 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xco03041
]
114155187 (usp39)
Spliceosome [BR:
xco03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
114155187 (usp39)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
114155187
NCBI-ProteinID:
XP_027890769
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All DBs
Position
12:16356935..16361918
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AA seq
499 aa
AA seq
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MISLKRERDNEEDDDDHEDGVAAKRGRGRAGEDRRSRHCPYLDTINRSVLDFDFEKLCSI
SLSHINVYACLVCGKYFQGRGQKSHAYTHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSL
EDITYVLKPTFTKKHIAALDKHGKLYRAYDGTTYLPGIVGLNNIKANDYANAVLQAFSNV
PPLRNYFLEEENYKGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLC
SKKTFQITKQGDAVDFMTWFLNALHGALGGTKKKSSIITKVFQGSMRIFSKKLPHPDLPP
EEKEALLLTEEYQEQMSESTFLFLTLDLPTAPLYKDEKEQLIIPQVPLFNILGKFNGNTE
KEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLSEYLTEE
AQATEKNTSYDLVANIVHDGKPTEGSYRIHVLHHGTGKWYEMQDLQVIDILPQMITLSEA
YIQIWKRQESSDTNNHRGV
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgatttctttgaagcgcgagagagataatgaggaggatgacgatgatcacgaagacggg
gttgctgccaaaagaggccgaggacgtgcaggagaagaccgtagaagccgccattgtcct
tatcttgacactataaacaggagtgtgctggattttgacttcgagaagctctgctctatc
tccctttcgcacatcaacgtgtatgcttgcctcgtatgtgggaagtactttcaaggcaga
ggtcagaagtctcatgcatatacccacagtgtacagtttagccaccacgtgttcctcaac
ctgcataccctcaagttctactgtctgccagataactatgagatcattgactcttcccta
gaggacattacatatgtactgaagccaactttcaccaagaagcacattgcggcattggac
aagcatggtaagctgtacagagcctatgatggaacgacttacctgccaggcatcgtgggg
ctcaacaacatcaaagccaacgactacgccaacgcggtgctacaggctttttcaaatgtt
ccacctttgcgaaactacttcctggaagaggaaaactacaagggaatccgcaggccacca
ggggacatcatgtttctcctggtccagaggtttggggagttgatgcgcaaactttggaat
ccaagaaactttaaggcgcacgtgtccccacatgagatgctgcaggccgtcgtgctgtgc
agcaagaaaacatttcaaattactaagcagggtgatgctgtagacttcatgacgtggttc
ttgaatgccctgcatggagctcttggaggcacaaagaagaagtcatcgatcatcacaaaa
gtttttcaaggctccatgcgaatcttctctaagaaacttccacacccagatttgccacct
gaagaaaaagaggcgctgcttctcacagaggagtaccaggagcagatgtcagagtccacc
ttcctgttcctgacccttgacctcccaacagctcctctctacaaagacgaaaaggagcag
ctgattattcctcaggttcctctcttcaacatccttggcaaattcaatggcaatactgaa
aaggaatacaaaacctacaaagagaatttcctcaaacggttccagctgaccaagttgcca
ccttacctcatcttttgcatcaaaagattcaccaagaacaacttctttgtggagaaaaac
ccaacaattgtcaacttcccaatcaccaacgtagacctttctgagtacctcacagaggaa
gctcaagctacagagaagaatacttcctatgaccttgttgcaaacattgtgcatgatgga
aaaccaactgaagggtcctacagaatacatgtcctgcatcatgggacgggaaagtggtac
gagatgcaagacctgcaagtgatcgacattctcccccagatgatcacattgtcagaggcc
tacatccagatttggaaaagacaagagagcagtgacacaaacaaccacagaggggtgtaa
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