Xiphophorus couchianus (Monterrey platyfish): 114155369
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Entry
114155369 CDS
T05908
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xco00535
]
114155369
Proteoglycans [BR:
xco00535
]
Extracellular matrix (ECM) proteoglycans
Others
114155369
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
VWA_3
Fn3_nematode
I-set
Pga1
Motif
Other DBs
NCBI-GeneID:
114155369
NCBI-ProteinID:
XP_027891026
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All DBs
Position
13:complement(21612722..21752351)
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AA seq
1868 aa
AA seq
DB search
MQFSVRLSFFLLGFVFIAVLPHTAKGQVSSPRRFRVKVLGQDKLEVSWKEPKGDFEGYKV
IYITRPGGQQKVLELAKQETKLIIKDYNPSKDYNFKISAVNGGKESKPLLGKQEAQQSGP
ETAQTQGTKKSDVTRENNEISEAEDGFMCKTPAIADIVILVDGSWSIGRINFRLVRAFLE
NLVNAFSVEFDKTRIGLAQYSGDPRIEWHLNAHTTKEAVIEAVKNLPYKGGNTLTGLALT
FILENSFKVESGSRPGVPKIGILITDGKSQDDVIPPAQSLKDAGIELFAIGVKNADENEL
KAIASPPEETHVYNVADFSVMSDIVEGLTKTVCDRVEQLDKKIKGGGEPAPPVTSIAAPR
NLVTSEITARSFRVTWTHAPGLVEKYRVVYYPASGGQPEEKVVVGTENSVELTYLNSLTE
YQVAVFAVYRSSASEALRGSATTLALPTVNNLELFDITHSTMRVRWKIAAGASGYMILYA
PLTEQEAADEKEVKVGDSVNEVELEGLTPATEYTVTVYAMYGEEASDPMTSQQTTLPLIP
ASNLRFQDVDHSSVRITWDSPSKLVRGYRIMYVKTSGVQTTEVDLGAVTSYLLKNLTSLT
EYTVGVFAVYKEGEAPAVTESFTTKMVPDPMDLKSSDISSDGFRLSWQHAASDVVLYRLT
LTPTDGGESKEVLVNGNINTYLTKGLEPASEYEVLLAAIYANQEESDEVVLIETTAKRTT
TVATTTTTTLTPRYAVKNLKIDEETTFSMRVSWQAVDSRNVRHYQLTYISARGDRAQEMR
TVPSGQTSLVLQPLLSDTEYKVTVIPVYNEGDGPVSSQMGRTLPLSAPRNLRVSEEWYSR
FRVSWDVPPSPTMGYRVVYQPLSAPGQALETFVGEDVNTMLILNLLSGTEYSVKVIASYT
TGSSEALTGKAKTLYLGVTSLSTYQVRMSGVCAQWVPHRHASTYRLVIQSVTGSQKQETK
LGGGASRHCFSSLKPNTEYKISIYSQLQDGTEGPAVTANVKTLPIPTLAPAKPPTTSPPP
TIPPAKEVCKAAKADLVFLVDGSWSIGDDNFLKIIRFLYSTVGALDRIGPDGTQVAIAQF
SDDARTEFKLNSYGDKERLLDAINKISYKGGNTKTGRAIQHVKENIFTAEGGARRGIPNV
LVVLTDGRSQDDVNKVSKEMQMSGYIVFAIGFADADYGELVSIASKPSDRHVFFVDDLDA
FQRIEEKLVTFVCEAATATCPSIPMSGSTTPGFRMMELFGLVENKYNSISGVSMVPGTFN
AFPCFHLHSNALMAQPTRFIHPEGLPSDYTITLLFRVLPDTPEEPFAIWEILNKNNDPLT
GVILDNGGKTLTFFNNDFRGDFQTVTFEDPEIKKLFFGSFHKLHIAISKTSAKVFIDCKM
VAEKFINAAGNITTDGVEVLGRMVRSRENKDNSAPFQLQNFDIICSTSWANRDKCCELPG
LRKEVDCPALPKACTCTQDSKGPAGPPGVPGGPGIRGARGDRGEPGPVGPAGPVGDTGVP
GPQGPPGPQGPSGRSIIGPPGSAGERGQKGEAGQQGQQGIPGRPGPVGREGPPGPRGLPG
KDGPQGRQGPPGTMGTPGAPGSPGNTGAQGKQGTLGPPGPPGTKGEKGERGDLQSTASVQ
AIARQVCEQLIQSHMSRYNTILNQAPSPPVSIRTVPGPPGEPGREGAPGPQGEQGPPGRP
GFPGQNGQNGNPGERGQPGEKGEKGSAGVGVQGPRGPPGPPGPQGLGRPGSQGPTGRPGN
PGTSGRPGVPGPVGPPGPPGYCDQNSCLGYNVGEVEEITDVHGIPPVQLPSSVFQNYGEA
EEDDPYRYYQPNYPAPQPVSPDDPALALDDVELRSPGVYRSKRKAEEVQAGTKRRIKRGV
KNLPKLTN
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctcagtcagactgagcttcttcctgctgggctttgttttcatcgcagtgttg
cctcacacagcaaaaggccaagtttcatcaccacggagatttcgtgtaaaagtcctggga
caggacaagcttgaggtatcatggaaggagccgaaaggagattttgaaggatacaaggtt
atttacatcacacgtccaggtggacaacagaaggtgcttgaactagcaaagcaggagaca
aagctgatcattaaagattataacccctcaaaagattacaactttaagatcagtgctgtg
aatggcgggaaggagagcaaacctcttctaggaaaacaagaagctcagcaatcaggcccc
gaaacagctcaaacccaggggactaaaaagagtgatgtcacacgagaaaacaacgagatc
tcggaagctgaagatggattcatgtgcaagactcctgccatagccgacattgtgattctg
gtggatggctcttggagtattggtcggattaactttaggctggttcgagcattcctagaa
aaccttgtcaatgccttttctgtagaatttgacaaaacaagaattggacttgctcagtac
agtggagaccccaggattgagtggcatctgaatgctcacactaccaaagaggctgtgata
gaggctgtgaaaaacttgccctataaaggaggaaacacactgacaggtctggctctcacc
tttatactggaaaacagcttcaaagtagaatctgggtcccggcctggtgttccaaaaata
ggaatcctcatcactgatgggaagtcccaagacgatgtgattcctcctgcccaaagcctg
aaggatgctgggatagaactgtttgctattggtgtgaaaaacgcagatgaaaacgagctg
aaggccattgcgtctcctcctgaggagactcacgtctataatgtggcagacttcagtgtg
atgagtgacatcgtggaaggtctcaccaagacagtctgtgaccgtgtggaacagcttgac
aaaaaaataaaaggaggaggagagccagctccacccgtcacctctattgcagcccctcgt
aatctcgtgacatcagagataacagctcgtagttttcgggttacatggacgcatgcgccg
ggcctggtggagaaatatcgagtggtgtactatccagccagtggaggacaaccagaagaa
aaagtggttgtggggacagagaacagcgtggagctgacctatctgaactccctcactgag
taccaggtggccgtttttgccgtctaccgaagttctgccagcgaggccctgagaggaagt
gccaccacattggcactgcccacagtgaacaacctagagttattcgatatcactcacagc
accatgagggtccgctggaagattgccgcgggggcttcggggtacatgatcctctacgcc
ccgctgactgagcaagaagctgcagatgagaaggaggtgaaagtgggtgattctgtaaat
gaggtggagctggaaggattaactccagccactgaatacactgtaacagtttatgccatg
tatggagaggaggccagtgatcccatgaccagccagcagaccacattaccactcatccca
gcaagtaacctacgtttccaagatgtggaccacagctcagttcgcataacttgggattcc
ccttccaagttggtgcgaggctaccgtatcatgtacgtcaagaccagcggagtccaaact
actgaggtggaccttggtgctgtgacgagttatttgctcaaaaacctgacctccctgacg
gagtacaccgtcggggtctttgctgtctacaaagaaggagaagctccagcagtgaccgaa
agcttcaccacaaagatggttccagacccaatggatctgaaaagcagtgatatctcctca
gatggtttcaggctgtcatggcaacacgccgcctctgatgtggtgctgtatcgactcacc
ttgacacccaccgatgggggagagagcaaggaggttctggtgaatggaaacattaacacc
tatctgactaaaggactagaacccgcctccgaatatgaagtcctcctggctgctatctac
gcaaaccaggaggagagtgatgaggtggtgctaatagaaaccactgctaagaggacaact
acagttgctacaacaactacaacgacattaacacctcgttatgctgtgaagaacctgaag
atcgatgaagaaaccacatttagcatgcgggtgtcgtggcaggctgtggactccagaaat
gtccgtcattatcaactgacctacatcagtgccaggggagacagagcacaggagatgagg
acggtgccctcaggtcaaaccagcctggttctgcagcctctcctttcagacacagagtac
aaagtcaccgtgattcctgtttacaatgagggagatggcccggtatcctcacaaatgggt
cggacacttcctctttcagctcctaggaacctgcgtgtgtcagaagaatggtacagccgc
ttcagggtcagctgggacgttcctccttcgcccactatgggctacagagttgtctaccag
cctctttctgcccctggacaggcattagagacttttgttggagaggatgtgaacaccatg
ctgatcctcaacctcttgagtgggacagagtacagtgtcaaggtcatcgcgtcctacacc
acaggatccagcgaggctctaacaggaaaggccaagactttgtatcttggagtaaccagt
ttgagcacatatcaagtgaggatgtctggtgtttgtgctcagtgggtgcctcaccggcat
gccagtacctacagactggttattcaatctgtgactggtagtcagaagcaggagaccaag
ctcggtggaggagcgagcagacactgtttcagcagcctgaagcccaatacagagtataag
atcagcatatactctcagctgcaggacgggactgaaggaccagctgtcactgcaaatgtg
aagacattaccgatcccaacactagcaccggccaagcccccgaccaccagtccacccccc
acaatccctcctgctaaggaagtttgtaaggcagccaaagcagacctggtctttttagtt
gatggttcctggagtatcggtgacgacaacttcctgaagattatccgtttcctgtacagc
accgtcggagctctggatcggataggcccagacggcacacaggtggccatcgcccagttc
agtgacgacgctcggactgagttcaagctgaactcctacggtgacaaagagcgtctgctt
gatgccatcaacaagatctcctacaagggaggaaacactaaaacaggtcgagccatccag
catgtgaaggaaaacatctttaccgctgagggaggagccaggagaggaatccctaacgtc
cttgtagttctgactgatggccgatcccaggatgacgtcaataaagtttccaaagagatg
cagatgtcaggttacattgtgtttgctatcggcttcgctgatgccgactatggagagttg
gtgagcatcgccagtaaaccgagcgacaggcacgtcttcttcgtggacgacctggacgcc
tttcagaggattgaagagaagctggtgacctttgtgtgcgaggccgctactgcgacttgt
ccatcaataccaatgagtggcagcacaaccccaggattccgtatgatggagctgtttgga
cttgttgaaaataagtacaacagcatctctggtgtttccatggtacctggcaccttcaat
gcctttccctgtttccacctgcacagcaacgctctgatggcccagccaaccaggtttatc
catcctgaggggcttccctctgactacaccatcaccctgctgttcagagtgctgcctgac
acgccggaggagccctttgctatctgggagatcctcaataagaacaacgatccacttaca
ggagtcatcctggacaatggaggaaaaactctgacattcttcaacaacgacttcagggga
gattttcagactgtcacatttgaagatccagaaattaaaaaactcttcttcggaagcttt
cacaagctgcacattgcaatcagcaagacgagtgccaaagtgttcatcgactgcaaaatg
gtggcagagaagttcatcaacgcagcaggaaacatcaccacagatggagtggaagttctg
ggcaggatggttcgctcccgagagaacaaggacaactctgcaccgttccagctccagaac
tttgacattatttgcagcacatcctgggccaacagagacaagtgctgtgaactgcctggt
ctgaggaaggaggtagactgtccagccttacccaaagcctgcacctgcacacaggacagc
aaaggtccagctggtcctcccggagtgcctggcggtcctggaatcagaggggccagaggt
gatcgtggagaacctggtcctgtgggacccgcaggtcctgttggagatacaggtgtaccc
ggacctcaaggaccccctggaccacagggaccaagtggacgctccatcattggaccccct
ggttctgcaggagagagggggcagaaaggtgaagctggccaacagggacaacagggtata
cctggaagacctggccctgtgggaagagaaggacctccaggacccaggggacttccaggt
aaagacggcccacagggcagacagggacccccgggaactatggggactccaggagctcct
gggtctcctggaaataccggcgcccaaggaaaacagggaaccctgggaccaccgggtcca
ccaggaacaaagggagagaaaggtgaacggggtgaccttcagtcaacggcatcagttcag
gccattgccagacaagtctgtgagcagctgatccaaagtcacatgtcacgctacaacact
atcttgaaccaagcgcccagtccaccagtgtccatccgcacagtgcctggacctccagga
gaacctggtcgggaaggtgccccggggccccagggagaacagggaccaccaggaaggcca
ggctttcctggccagaatggtcaaaatggaaatcctggagaacgaggtcaaccgggagaa
aagggggagaagggatctgcaggcgttggtgtccagggccccagaggacctccaggacct
cctggtccccaaggactgggcagacctggcagccagggtccaacaggtcgccctggaaat
cctggaacttctggtcggcccggagttcccggtccagtcggccctccaggaccgccgggt
tactgtgaccagaactcttgtttgggctacaatgttggagaagttgaagagatcactgac
gtccacggtatccctccagtccaacttccgtccagcgtcttccaaaactacggagaggca
gaagaggatgacccataccgctactaccagcccaactacccagctcctcaacccgtctcg
cctgatgaccccgcgctggcgctggacgatgtcgagctgaggtcccccggtgtgtaccgc
agcaaacggaaggcggaagaggtgcaagccgggacaaagaggagaataaagagaggagtg
aagaatcttcctaaactaactaactga
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