Xiphophorus couchianus (Monterrey platyfish): 114155536
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Entry
114155536 CDS
T05908
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114155536 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114155536 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114155536 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xco00535
]
114155536 (col9a2)
Proteoglycans [BR:
xco00535
]
Extracellular matrix (ECM) proteoglycans
Others
114155536 (col9a2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
114155536
NCBI-ProteinID:
XP_027891278
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Position
13:7054228..7116521
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AA seq
688 aa
AA seq
DB search
MAALSALLKTWVVLQTLCLALAQVRGPPGPQGLPGPPGIPGSDGIDGEKGPLGSPGPPGQ
KGEPGEPGPDGPPGENGIDGLIGAKGDRGQIGSPGPKGQPGSSGEPGRPGVGLPGLGGAP
GPIGLPGQFGPPGPKGVLGPPGPPGLPGPPGKPGPPGKFIGLEEGSADLQCPLNCPAGPK
GPQGLQGVKGHKGRAGVLGDPGSIGNLGPKGDVGISGEQGIPGPPGPLGLRGYPGMMGPK
GEAGPRGYKGIVGPVGIPGPPGEEGPQGTLGDSGEKGDKGGQGIQGPQGAVGKKGENGLP
GIDGKDGTPGIPGIKGAPGQPGIPGPPGPAGTAGLPGTPGGKGEPGRKGEPGPRGHGGMP
GTPGPLGEPGIPGEPGMEGVPGPKGDRGQRGPVGPQGSVGKPGSKGERGPIGIPGPQGLT
GTKGDQGFQGKVGPKGDIGDPGVEGLAGEKGEKGLSGEPGPKGQQGIRGDPGHNGPTGDP
GKPGDPGPPGLPGPRGLNGERGVPGVPGIAGPAGRDTSDQHIIDVVLKMLQERLQAVAVS
AKRVVLGGAGVMGPPGPPGPPGAPGPQGPHGLPGTRGIPGMIGGPGQIGNTGLKGRRGPK
GERGDLGKPHPGQPGPPGIQGPPGVDGVARDGRPGERGPQGAAGEPGHPGKAGPAGLPGY
CEAAMCLAASAYTSPRLQEAGTIKGPNI
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctctccgccttgctgaagacctgggtcgtcctgcaaaccctgtgtctggct
ctggcacaagtgaggggtccgcccggacctcagggtctaccaggtcctcctggcattcct
ggctcggatggcattgatggggagaaaggaccgcttggttcccctggcccaccgggacaa
aagggagagccaggagagcccggccctgatggaccccccggagagaacggcattgacggt
ttgattggagcaaaaggtgatcgcggacagatcggtagccccggcccaaagggtcaacca
ggttcaagcggtgagcctggacgtccaggagtcggccttccaggtctgggtggtgcccca
gggccaattggccttccaggtcaatttggaccacctggaccaaagggtgttttgggacca
ccaggtcctccaggactccctggacctccaggcaaaccgggtcctccaggcaagtttatt
ggtctcgaggagggtagtgcagacttgcagtgtcctctcaactgcccagcaggacccaaa
ggccctcagggactgcagggtgtaaaaggacacaaagggcgtgccggcgttctcggagac
cccggcagcataggaaacctgggacccaagggagatgttggtatctctggggagcagggc
atcccaggacccccgggtccgttgggtctgcggggttatccaggaatgatgggtcctaaa
ggagaggccggccctcgcggatacaagggcatcgttggacctgtaggaattcctggacct
cctggtgaggagggacctcaggggacacttggagactcgggagaaaaaggagacaaaggc
ggccaaggcatccagggcccacagggggctgttggcaaaaagggggagaatggtcttccg
ggtatcgatggaaaagatggcacacctggcattcctggaatcaagggggctcctgggcaa
cccggaatacctggccctcctggtcctgcggggacagcaggtttgcctggcacgccgggg
gggaaaggggaacctggaagaaagggggaacctggaccaaggggccacgggggcatgcct
ggtactcctggtcctttgggtgaaccaggtattcctggagagccaggtatggaaggagtt
cctggacctaagggtgacagaggacagcggggaccagtggggccacagggatcagttggc
aagcccgggagcaaaggagaaagagggcctattggtatcccaggcccacagggacttact
gggactaaaggggatcagggcttccaaggaaaagttggtccgaagggagacataggcgac
ccgggtgttgagggattggctggcgagaaaggcgaaaagggtttgtctggtgaacccggg
cccaaaggacagcaaggaattaggggggaccccggacacaacggccccaccggagacccc
gggaaaccaggggatccggggccgcctgggctgccgggtccaaggggactcaacggagag
agaggagtacccggcgtaccgggcattgctggaccagcagggcgtgacacatccgaccag
catattattgacgtggtgctaaagatgttgcaggaaagactgcaggctgtggcagtgagt
gccaaaagggttgtgcttggtggtgccggtgtaatgggacctcccgggcctcctggtcca
ccgggggcacctggcccccaggggccacatggcttacctggcacacgtggtatccctggt
atgattggaggacctgggcagattggaaacactgggctaaaaggaaggagaggaccaaag
ggagagagaggagatctaggtaaacctcacccaggtcaaccaggacctccagggatacaa
ggtcctcctggcgttgatggtgtggctagagacggcaggcccggcgagagaggacctcag
ggagcagctggtgagccgggtcaccctggtaaggcagggcccgcgggtcttcccgggtac
tgcgaggcggcaatgtgtctggcggcatcggcgtacacctcgccgagattacaagaggcg
gggacaatcaaaggacccaatatttag
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