Xiphophorus couchianus (Monterrey platyfish): 114155619
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Entry
114155619 CDS
T05908
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114155619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114155619
03036 Chromosome and associated proteins [BR:
xco03036
]
114155619
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114155619
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
114155619
mRNA degradation factors
5'-3' decay
Decapping complex
114155619
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Gene silencing
piRNA pathway
114155619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
MS_TIM-barrel
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
114155619
NCBI-ProteinID:
XP_027891385
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All DBs
Position
13:complement(25259153..25269427)
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AA seq
483 aa
AA seq
DB search
MATARTENLGPVVMGLNKQNGQLKGQTKPAAGPPASTQGKNPAGSNQDGGGIKFGDDWKK
CLQLPPKDNRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGR
DILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQMSQICIQLSKHLGGV
KVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDEADKLLSQ
DFVVLIEDIISFLAKNRQILLYSATFPISVQKFMVKHLQKPYEINLMEELTLKGITQFYA
YVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRN
RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLA
INLITSEDRFNLKAIEEQLVTDIKPIPSSIDKSLYVAEYHSGPVTDGDEDDAEEKPPRQQ
DST
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagcccgaacggaaaacctcggtccagttgtgatgggactgaataagcagaac
gggcagctcaaaggacagaccaaacctgccgcaggacccccagcatcaactcaaggaaag
aatccagccgggagcaaccaggacggcggaggaatcaagtttggagacgactggaagaaa
tgcctacagctccccccgaaggacaacagggtcaaaacctcagacgtcacggcaaccaag
gggaacgagtttgaagattactgcctgaaaagggaactcctgatgggaatctttgagatg
ggctgggagaaaccgtcgccgatccaggaggagagcattcccatcgcgctgtccgggcgc
gacatcctggcacgagcgaagaacggcacggggaaaagcggcgcctacctgatcccgctg
ctggagcggatagacctgaagaaggaccacatacaggccatcgtcatggtgcccacacgg
gagctggcgctgcagatgagccagatctgcatccagctcagcaaacatctgggcggagtc
aaagtgatggcgacgaccggcggaaccaacctgagggacgacatcatgcgcctggacgag
accgtgcatgtcgtcatcgccacacccggccgcatcctagacttgataaagaaaggcgtg
gcgaaggtggaccgggtccagatgatggtgatggacgaggcggacaagctgctctctcag
gacttcgtggttctcatcgaggacatcatcagcttcctggccaagaaccggcagatcctg
ctctactccgcaaccttccccatcagcgtccagaagttcatggtgaagcaccttcagaaa
ccctatgagatcaacctgatggaggagctgaccctgaagggcatcacccagttctacgcc
tacgtgacggagcgccagaaggtccactgcctcaacacgctcttctccaggctgcagatc
aaccagtccatcatcttctgtaactccacccagcgggtggagctgctggccaagaagatc
acgcagctgggatactcctgcttctacatccacgccaagatgatgcaggagtacaggaac
cgcgtgttccacgacttcaggaacgggctgtgcaggaacctggtctgcaccgatctcttc
accagaggaatcgacatccaggctgtgaacgtcgtcatcaactttgatttccctaaaaat
gcagaaacgtacctccatcgcatcgggaggtcagggcggttcggccacctgggtctggcc
atcaacctgatcacctcggaggaccgcttcaacctgaaggccatcgaggagcagctggtg
accgacatcaagcccatccccagcagcatcgacaagagtctctacgtggccgagtaccac
tccgggcccgttaccgacggcgacgaggacgatgcggaggagaagccgccgcgccagcag
gacagcacctaa
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