Xiphophorus couchianus (Monterrey platyfish): 114155888
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Entry
114155888 CDS
T05908
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114155888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114155888
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114155888
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114155888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4140
Motif
Other DBs
NCBI-GeneID:
114155888
NCBI-ProteinID:
XP_027891827
LinkDB
All DBs
Position
13:complement(22916981..22949326)
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AA seq
910 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANTNQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLIENRKLIETQMERFKIVERETKTKAYSKEGLGLIQKVDPAQKE
KEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKFIEKHRYHI
RMLETILRMLDNDSLQVESIRKIKDDVEYYRESSQDPDFEENDYIYDDLDLDEFPQPLLA
TSPPGPSHLEDEIFQNSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSP
VKNGNPSSSLSSSSSSSSSSSSASGLTSSSLVSVAGRGIGGSGSSHLSAVGGPFSNTLAS
SYSNATQQPPHPSVQQQQAKNSPSSSAPINSSTSTNSHNASSASSPPSTQGLLTSNSLPQ
APSGPTATSNSLGLSLGPSLGKSSISTSPGLSGMPASLSNMVGLLSSSTPTPYAQAAASG
TASSGLPGSLGGVSSTTTNSGVGAIGSSSIAVGGPTFSQGGMLGTLGTASIVGSVGSGIL
GLGLGSGQSGVQGSSLGPQSPIGSLAPGSGIGVIGSNSGSSGSAGSGVGGGSSSLSGRPP
SRPKQNGSTSHSAVVADSTTDSALNSATQSQSSQSSSLTSTANQLKDTGPSLLGSMGLSS
TSPLPVSYSEAKTTSGGSLQNGPLSYSQPPESIKPQEPLSRSMAERAAPSSGIEGDVSSL
HLTSDIFPSSTTTPSGPPSAPQSSLSEVSILPSLGVCPLGPVPLSKDQLYQQAMQEAAWT
HMPHPSDSERIRQYLMRNPCPTPPFHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKA
QYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEYEQGTYIYFDYEKWGQRKKEGFTFE
YRYLEDRDLQ
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggggaaatagatcgatgtctgaaaaaagtagcggaa
ggagtggagcagtttgaagacatttggcaaaagcttcacaatgcagccaatacaaaccag
aaggagaaatatgaagcggacctcaagaaagagattaaaaagctgcagcgccttcgagac
cagattaagacgtgggtggcatccaacgagatcaaagacaaaaggcagctaatagagaac
cggaaactcatagaaacgcaaatggagcgctttaaaatagttgaaagagaaacgaagaca
aaagcgtactcaaaagaaggactcggccttatccagaaggtggacccggcgcagaaggag
aaggaagaggtcggcacctggctaacgaacacgatagacacgttgaacatgcaggtggac
cagttcgagagtgaagtggagtctctttcagtccagacgagaaaaaagaaaggagacaag
gagaagcaggaccggatcgaggagctgaaaaagtttatcgagaagcatcggtatcacatc
cgaatgctggagaccatactgaggatgctggacaatgactcactgcaggtcgaatccatc
aggaagatcaaggatgatgttgagtactacagagagtcatcgcaggatccagattttgag
gagaacgattatatatatgacgatctcgacctggatgaattccctcaaccattacttgcc
acctccccaccaggaccctcgcacttggaggacgagatcttccagaactccagcagcaca
ccgacctccaccacctcatcctcaccaatccctccttcgcctgccacttgcactgcggag
aactcagaagatgacaagaagaggggacgttcgacggacagtgaagtcagtcagtcaccg
gtgaagaatggaaatccctcctcgtcattatcttcatcctcctcttcctcctcttcgtct
tcttccgcctcggggctcacctcatcctctctggtttctgttgcgggcagaggcatcggc
ggctctggaagcagtcatcttagtgcagtggggggtcctttctccaacaccttagccagc
agctacagcaacgccacgcagcagccgcctcacccgtcggtgcagcagcagcaggccaaa
aactcgccgagctcttcggctcccatcaactccagcacctccaccaacagccacaacgcc
tcgtcggcgtcctcgccacccagcacacaggggctcctgacttcgaactccctgccccag
gcgccttcaggtcctacggcgacttccaacagccttggcctcagtctggggccctctctg
gggaaaagctccatctccaccagccccggcctgtcagggatgccggcgtccctaagcaat
atggtgggtcttctctcaagctccaccccaactccctacgctcaggcggccgcctcgggc
acagccagctcagggttaccggggtctctcggcggcgtcagcagcacaacgaccaacagc
ggggtgggcgccattggtagcagcagcatcgcggtcggcgggccgacgttctcgcaggga
ggcatgctcggcacgctcggcacggcttctatagtggggagtgtcggctcggggattctg
ggtttgggtttgggttcaggtcaatcgggagtgcagggatcttccctggggccgcagagc
cccatcgggagcttagctcctggaagcggaataggagttatcggaagcaacagcggcagc
tcaggatccgcagggagcggagtcggaggaggaagctcatccctgtccggtcgaccgccg
agcagaccgaagcagaatggtagcaccagtcacagtgctgtggtagcagatagcacaaca
gactctgccctcaacagtgccacccaatcacaaagcagccaatcctcatctctgacctcc
acagccaatcagcttaaggacactggtcccagtttacttggctccatgggtttgtcgtcc
acctctccattgccggtgtcctacagtgaggctaaaacaacaagcggtggaagccttcag
aacgggccgctgtcctactcacaaccacccgaaagcatcaagccccaggagcctctgagc
aggtccatggccgagcgagcagcgcccagctcagggattgagggagatgtgtcctccctg
caccttacttcagacatcttcccaagcagcactacgaccccttcggggcccccgtcagca
cctcagtcctccctgtcagaggtcagcatcctcccgtcactgggcgtctgtccactgggg
ccagttcccctttccaaagaccagctctaccaacaggccatgcaggaagcggcgtggacg
cacatgccccacccgtccgactcagagagaataaggcagtaccttatgaggaacccctgc
cccaccccacctttccaccaccagatgccaccacctcattccgacactgtagagttttac
cagaggctttccacggaaacgttgttcttcatcttttactacctggagggcacgaaggcc
cagtatctggcagccaaggccctgaagaagcagtcatggaggttccacacaaagtacatg
atgtggtttcagaggcacgaagagcccaagaccatcactgatgagtatgagcagggaaca
tacatttatttcgactatgagaagtggggccagcggaaaaaagaggggttcacctttgag
taccggtacctagaagaccgagacctccagtga
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