Xiphophorus couchianus (Monterrey platyfish): 114155909
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Entry
114155909 CDS
T05908
Symbol
pdcd6ip
Name
(RefSeq) programmed cell death 6-interacting protein isoform X1
KO
K12200
programmed cell death 6-interacting protein
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03250
Viral life cycle - HIV-1
xco03272
Virion - Hepatitis viruses
xco04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
114155909 (pdcd6ip)
03272 Virion - Hepatitis viruses
114155909 (pdcd6ip)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
114155909 (pdcd6ip)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114155909 (pdcd6ip)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xco04147
]
114155909 (pdcd6ip)
Membrane trafficking [BR:
xco04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
114155909 (pdcd6ip)
Exosome [BR:
xco04147
]
Exosomal proteins
Proteins found in most exosomes
114155909 (pdcd6ip)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
AAT
DUF2226
COG3_N
Motif
Other DBs
NCBI-GeneID:
114155909
NCBI-ProteinID:
XP_027891861
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Position
13:complement(11187617..11207114)
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AA seq
879 aa
AA seq
DB search
MATFISVPLKKSSEVDLVKPLSKFVTASYPAGDEQSEYLRAVEELNKLRKSALGRPLDKH
ESSLEILLRYYDQLCSIEPKFPFCENQLCLTFTWKDAFDKGSLFGGSVKLSLASLGYEKT
CVLFNCAALASQIATEQNIDNDECLKAAAKYYQLASGAFSHIKDTVLSALSREPTMDICP
ETVGTLSTIMLAQAQEVFFLKATSDRMKDAVIAKLANQAADFYGEAFKQCQYKDNLPKYF
YFQEVLPVLAAKHCIMQANAELHQSILAKQKKRFGEEIARLQHAAELVKTVASRYDEYVS
VKDLTDKINRALTAAKKDNDFIYHDRVPEVKDLEHIGKAALVKATAITPPLSQKFTDLFE
KMVPMAVQQSMGIYGQRKADTVNRLVGMMREATNLCNGVLASLNLPAALEDLSGDSIPQS
IAEKSRSIVGQGGLQNIEKLIRDLPELLTRNREILDESLKMLDDEETTDNELRSKFNQRW
NRTPSGDLYKPLRAEGTNFRNVLDKAVQADQVVRDRYNAQCDMIALLCKPENELNGAIPS
ANPTRTLQGSEVVNVLRSLLAQLDEVKKEREMLEGEIKAVTFDMSTAFLKALAQDGAINE
EQLSLSQLDQSYGSYNHKVSASLSKQEELLGQVQTSHQEFSSLKQSNNEANQREEVLKKL
ASAHDSYVEICNNLREGTKFYNDLTEILLKFQNKCSDIVFARKTERDELLKELQQSIARE
PSAPSFNVPAYQSTPAAPALAPGPTPAPRTVFAQQPQQVQQQPQQKPQPPSRPPPPSFTP
QAASAGAPTPTGPPTSNPPPAAPPSQAQGPPYPTYQGYQGFYQMPMGYNPYAYGQYNMPY
MPYQAAPGQGGFPGAPPAGQPYPGYPQQPPQQQPYYPQQ
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgtttatttcagtcccgctgaagaagtcctccgaggttgatctggtgaagccg
ctgtcgaagtttgttacagcctcgtatccagcgggggacgagcagtcagagtaccttcga
gccgtggaggagttgaacaagctccgcaagagcgcgctgggaaggccgctcgacaaacac
gagagctccctggaaatcttactgagatactacgatcaactgtgttctattgagcccaag
tttcccttctgtgaaaaccagctctgcctaacctttacatggaaggatgcctttgataaa
ggatctctgttcggtggctccgtcaagctctcactggccagtctgggttatgagaagaca
tgcgtgttgttcaactgtgcagctctggccagtcagatcgccacagagcagaacattgac
aacgacgagtgtctgaaagctgccgctaaatactatcagttggccagtggagcgtttagt
cacatcaaggacacagtgctgtctgcgctgagcagagagccgaccatggacatctgtcct
gagaccgtaggaactctgagcaccatcatgctggcccaagcccaggaggttttcttcctc
aaagccacttcagaccggatgaaagatgctgtgattgcaaagttggccaatcaggccgca
gatttttacggcgaagccttcaagcagtgtcaatacaaagacaaccttccaaagtatttt
tattttcaggaagtgctgcctgtgctggcagccaagcactgcatcatgcaggccaacgcc
gagctgcatcagagcatccttgccaagcagaagaagcgttttggggaggaaattgctcgt
ctgcagcacgcagcagagctggtgaagaccgtcgcatctcgctacgatgaatacgtgagc
gtgaaggacttgactgataagatcaaccgagcgctcactgcggccaagaaagacaacgac
ttcatctaccatgaccgcgttcccgaagtcaaagacctggagcacatcggcaaggcggcg
ctggtcaaagctactgctatcacacctccactcagccagaaattcacagatctatttgag
aagatggttcccatggccgttcagcaatccatgggcatctacggtcagaggaaggccgac
actgtgaacagactggtgggaatgatgagggaggccaccaatctctgcaacggggtgttg
gcctctctgaacctgcctgctgccctggaggatctgtctggagactctatcccacaatcc
atcgctgagaagtccagatcaatcgtggggcaaggaggactgcagaacatcgagaagctc
atcagagacctgcctgagctgctgactcgcaacagagagatcctggacgagtctttgaaa
atgctggacgatgaggagacaacagacaacgagctgagaagcaagttcaaccagcgctgg
aacagaaccccgtctggagatctgtacaagccgcttcgtgcagagggcaccaacttccgc
aatgtcctggacaaggcagtgcaggccgaccaggtggtaagggaccgctacaacgcccag
tgcgacatgatcgccctgctgtgtaaacctgagaacgagctcaatggcgccatcccctcg
gccaaccccaccaggactctgcagggcagcgaggttgtgaacgtgctgcgctccctgctg
gcccagctggacgaggtgaaaaaagagagggagatgctggagggggaaatcaaagccgtg
acgtttgatatgtcgaccgccttcctgaaggcgctcgcccaggacggagccataaacgag
gagcagctgtcgctctcccagctcgaccagtcgtatgggagctacaaccacaaagtgtcg
gccagcctctccaagcaggaagagctgctggggcaagttcagacgtcccaccaggagttc
agcagcctgaagcagtccaacaacgaggccaaccagagggaggaggtcctgaagaaactg
gcttccgcacacgacagctacgtcgagatctgcaacaacctgcgcgaaggcaccaagttc
tacaacgacttgacagaaatcctgctcaagttccagaacaaatgcagcgacatcgttttc
gctcgcaagacagagcgcgatgagctgctcaaggagttgcagcagagcatcgcccgagag
cccagtgctccatccttcaacgtccccgcctaccagtccaccccggcagccccagctctt
gccccgggtccaacccctgctcccagaaccgtctttgcccagcaacctcagcaagtccag
cagcagccccagcaaaaacctcagcctccctctaggccacctccacccagcttcactcct
caggcagcctccgcgggtgcaccaacacccactgggcctcctaccagtaaccctccacct
gcggcacctccctcacaggcacaaggaccaccttatcccacttaccaaggctaccaagga
ttctaccagatgcctatgggctacaacccctacgcttatggccagtacaacatgccctac
atgccctaccaggccgccccggggcagggcggattccccggagcgccccctgcaggacag
ccctaccctggctacccacagcagcccccccagcagcagccctactacccccaacaataa
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