Xiphophorus couchianus (Monterrey platyfish): 114155911
Help
Entry
114155911 CDS
T05908
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
114155911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xco03021
]
114155911
03036 Chromosome and associated proteins [BR:
xco03036
]
114155911
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
114155911
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
114155911
PBAF complex
114155911
GBAF(ncBAF) complex
114155911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
SWIRM-assoc_3
SpeFL
Motif
Other DBs
NCBI-GeneID:
114155911
NCBI-ProteinID:
XP_027891864
LinkDB
All DBs
Position
13:10105017..10112848
Genome browser
AA seq
937 aa
AA seq
DB search
MSGGTNLGFPGINQALAHRKKDSSPSARFWESPDTLTQLEVVRQWIGKHYKKYVLVDAPS
CQVLAAVTLQLLQFQEDAFGRQAPNPALTKLPAHCFLDLQPGGGLCHILGTAYKFKVEQG
WRRFDLQNPSRTERNVEMFGVIEKALIQNNCVSIPVVFIDPTVDLELSSRLTGIIIKHKG
AITEDSIMATHHIYDSLASTEEDEWMRPVMRKDKHVLVHWGMHPDSYDSWLSSSDVEGDV
EDVPHVERPWRVHAGWVLDTDVFNEWMNEEDYCVNERNLPFILRQRIHLQEDQDSKSTPF
KKRRRSPSPSTDGRKKGKKGRRRGQQEEEPEEDLTKDMEDPTPVPNMEVVTLPKNVNLKK
DSENTPVKGGIMADLDDQEDDFPGREEDEGRSEIPRLSEGEDNITEQTHHIIIPSYTSWF
NYNSIHSIEKRALPEFFNGKNKSKTPEIFLAYRNFMIDTYRLNPQDYLSSTSCRRNLTGD
VCALIRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQHKPLQVSA
SQHMLNFPEKSREKPLDYQNFGLRTDIYARKHPKTKGANAGREWTEQETLLLLEALEVYR
DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQSENPVMSTV
AFLASVVDPRVASAAAKAALEEFSRAQEDSLYKTSDPSNHPEQTDAAEAESLDSSSHQVP
VRLDGVKMEPGVPKVDGDQVKREHSESILTEEGDVRGEDCENRGEGDDGTRGMELDLVEG
SVPMAAAAALSSAASKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDRE
KEALEQQRQQLLTERQTFHTEQLQQAEMKVRQQREQQGQPGYTMQHSGQPVANRMVPGGN
GQTMAPRLPGAPNGMYPSSQPDGIASAQPTPPSSSHS
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaggaacaaacctcggctttccggggataaaccaagcgttggcacatcgcaaa
aaagacagtagtccctctgctcggttctgggagagtccggacactttaacccagctggag
gtggtgcgacagtggatcgggaagcactacaaaaagtatgtgctggtggatgctccatct
tgtcaggtgctggctgcagtcaccttgcagcttctccagttccaggaggatgcctttggc
agacaagctcccaaccctgcgcttacaaagcttccagcacattgcttcctggacttgcaa
ccaggcggtggactctgccacatcctcggcactgcttacaaattcaaggttgaacagggc
tggagaaggtttgacctgcagaatccatcaagaactgagagaaacgtcgagatgtttggt
gtgattgaaaaagctttaatccagaacaactgtgtctccatccctgttgtatttattgac
cctactgttgacctggagctgtccagcagactcactggcatcatcatcaaacacaagggt
gcaattactgaggacagtataatggccactcatcacatatacgactcacttgcttctaca
gaggaggatgagtggatgcgtcctgttatgcgaaaggataaacatgttttggtccactgg
ggcatgcaccctgacagttatgacagctggctgtcctcaagtgatgtggaaggagacgtc
gaagacgtgccgcacgtcgaaaggccatggagggttcatgctggttgggttctggacaca
gacgtgtttaatgagtggatgaatgaggaggactattgtgtaaatgagaggaatctgccg
ttcatccttcgacagcgaatccacctacaagaagatcaggactccaagtccactccattc
aaaaagagaagacgctcaccctccccttccactgatggcagaaaaaaaggaaagaaaggg
agaaggcgtggccaacaggaagaggagccagaagaagacctgaccaaagacatggaggac
ccaacgcctgtgccaaatatggaagtagtcactctacccaagaatgtgaacctaaagaaa
gatagtgagaatacgccagtgaagggaggcatcatggctgaccttgatgatcaggaagat
gactttcctggaagggaagaagatgagggaagaagtgagatccctcgcttatcagaggga
gaggacaatatcactgaacaaactcatcatatcataatcccaagctacacatcatggttc
aattataacagcattcactcgatagagaaacgtgctcttcctgaattcttcaacggaaag
aacaaatcgaaaactcctgaaatcttcctggcgtatcgtaacttcatgatcgacacgtac
cgactcaacccccaggactacctcagctcaacgtcctgcaggcgcaatctcactggagac
gtctgtgcccttataagggttcatgcctttttagaacagtggggtttgatcaactaccaa
gtggatgcagagagccgacccctccctatgggacctcctccaacccctcatttcaatgtc
ctggccgacacgccatccggactggcacccctgcagcacaaaccccttcaggtgtccgcc
tcacagcacatgttgaatttcccagagaagagcagagagaaacctttggactaccagaac
tttggtctgcgcaccgacatctatgccaggaaacacccaaagactaaaggagcaaatgca
ggacgagaatggacagagcaggagacattgttactgttggaggccttagaagtgtacagg
gacgactggaacaaagtatcagagcacgtgggctccagaacgcaggatgaatgcatccta
cactttctacgtttgcccatcgaggacccttacctggaggactcgtcggcctctctgggg
ccgctggcgtatcagcctgtgccttttagccaatcggaaaaccccgtcatgagcactgtg
gccttcctggcgtctgtggtagatccccgtgtggcgtcagccgcagcgaaggcggcgctg
gaggagttctccagagcacaggaagactcgctgtataaaacctctgatccatccaaccat
ccagaacaaacagatgcagcggaagcggaaagtcttgactccagctcccatcaggttcct
gtgaggctagacggagtcaagatggagcctggtgtgccaaaagtggacggagatcaagtt
aaaagagaacatagtgaaagtattctgacggaggagggtgatgtcaggggggaggattgt
gagaacaggggagaaggggacgatgggacgagagggatggagctggacctggtggaggga
agcgttcccatggcagcagcagcagctctgtcatctgctgcctcaaaggccaagcactta
gcagcagtagaagagaggaagatcaagtctctggtggctctactggtggagacgcagatg
aagaagctggagatcaaactgagacattttgaagagctggaaaccatcatggacagagag
aaggaggctctggagcagcagcgccaacagctgctgacagagaggcagactttccatact
gagcagctgcaacaggcagagatgaaggttcgccagcagagggagcagcagggccagccg
ggttacacaatgcaacattcaggtcagcctgtggccaacaggatggtacctggaggaaac
ggtcagacgatggcccctcgtctccccggagctccaaatgggatgtacccgtcgtcacag
cctgatgggatagcgtctgctcagcccactcctccgtcatccagtcacagctga
DBGET
integrated database retrieval system
