Xiphophorus couchianus (Monterrey platyfish): 114156420
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Entry
114156420 CDS
T05908
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114156420 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114156420 (skiv2l)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114156420 (skiv2l)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114156420 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
114156420 (skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
Motif
Other DBs
NCBI-GeneID:
114156420
NCBI-ProteinID:
XP_027892642
LinkDB
All DBs
Position
13:complement(17887607..17918443)
Genome browser
AA seq
1246 aa
AA seq
DB search
MDRIHVPPVGPMDLPLSLLEMGRSGRFELITHPLPDQPLPPQSTLPHGLPPTSLGLEREV
EKRFLQDPAWLPIHDTDFAFQKFLKVTERKVNVDSLLSCAPSPLHSGLSVVRDPTTGMLL
DFTEVLLENTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLDQIKTRSEQE
EEINFEKDLLKIPPGLKAGMDFSDKDAKIAKPEVNLMSLLSTLEDIPNLQPEAEEKEDDK
AGQEAVRIPRTNSLEDLGIKDGESSCSQTEAGKTDKSKPKENPEEKKKWAIPVDILSPCE
DFYKRIPNPAFKWPFELDTFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRH
IYVISTMKRPVPLEHYLYTGNSTKTQKEMFLLVDAAGNFLTKGYYNAVDTKKERTSKHAQ
SFGTKSMPQHTSASQDRAVWLTLLHFLSQRQQTPVVAFTFSRTRCDENARSLDSMDLTTS
IEKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGIAVHHSGILPILKEVIEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKSGVHEMADLHAMMMGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSESH
RDTQAHEKRISHLKQMLASLPPLETEGQLSDILPYYHTATEMQNTREALQKAILESVNGL
KALSVGRVVIVNNKQHLNALGVILQVSNDAVNRTFMALIICEKGNEEVDRKAEDNATFQH
LYNTALFIPEGPCSHTVQKLKLQDISAITVKTLKVISDRIIDNYNKRQQPRFRAEPPGQA
ISTATQELLRLAEANPGGVATLDPVNDLQLKSVDVVEGSMRLRVLQDSLRDFNCVHSPTF
AEQFARIKERMSVQEELDRLLFLVSDQSLVLLPEYHQRIKVLQSLQYIDSSGAVQLKGRV
ACQISSHELLLTELLFENVLSPLAPEESAALLSCLVFTQNTQTEPHITSTLKESIDRVLS
VAQRIGQLQRECGIAQTTEEFVGQFKFGLTEVVYCWARGMPFAEIAMLTDVQEGTVVRCI
QRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggacagaatacatgtaccccctgtcggccccatggacctgccgctgtccctgctggag
atgggacgctcaggaaggtttgagctcatcacacacccgctgcctgaccagccgttgcct
ccccagagcacgcttccccatggactcccacccaccagcctgggcctggagagagaagtg
gagaaacggtttctgcaggatccagcctggctgcccatccatgacacagactttgccttt
cagaagtttctcaaggtgactgaaaggaaggttaatgtcgactctttgctcagctgcgcc
ccgtctccgcttcactctgggctctcagtcgtcagagatccaaccacagggatgctgctg
gacttcacagaggttttacttgaaaacactggcctgtcggccaaaaactcgctgtcactg
cagcgtcagcctgggcctccttctgaaagccttcggggaagcaacactaactaccccttc
ctccccggaggaatggaggaactcactctggaccaaattaagacgagatctgaacaggag
gaggaaataaactttgagaaagatttactaaaaatccctcctggactcaaagctgggatg
gatttctctgataaagatgccaaaatagcaaaaccagaggtgaacctcatgtctctgctg
tccacactggaagacattcctaatcttcagcctgaagcagaggagaaggaggatgacaaa
gcaggacaagaggccgtcagaattcccaggactaacagcctggaagacctgggaataaag
gatggagagtcttcttgttcccaaacagaggcaggaaaaacagacaagtcaaagccaaaa
gagaacccagaggagaaaaagaaatgggccatccctgtggacattctgtcaccctgtgag
gatttctacaaacgcatcccaaacccggcattcaagtggccctttgagttggacactttc
cagaagcaggctgtgctgaggctggaggcccacgactccgtttttgtagccgctcacacg
tcggccggcaaaacggtggtggctgagtacgccatcgctctgtcccagaaacacatgaca
aggaccatctacacgtctcccatcaaagctctgtccaatcagaaattcagagactttaaa
accacttttggggacgtgggactcctgaccggagatgtccagctcagtcccgagtcttcc
tgtctcatcatgaccacagagatcctcaggtcgatgttgtacaacggctcagaggtcatc
agagacctggagtgggtcatctttgatgaggtccactatattaatgatgctgagagaggg
gtggtttgggaggaagtgctgatcatgcttccagatcacgtcagcatcatcctgctcagc
gccacagtgccgaatgctttggagttcagcgagtggatcggtcgtattaagaagaggcac
atttacgtgatcagcaccatgaagcggcccgtacctttggagcattacctgtacactgga
aacagcaccaagacccagaaggagatgttcctgctggtggacgctgcaggaaacttcctc
accaaaggctactacaacgctgtcgatacaaagaaggagcggaccagcaaacacgcccag
tcattcggcacaaagagcatgcctcagcacacctcagccagccaggaccgagcggtgtgg
ctcacgctgctacacttcctgtcccagcggcagcagacccccgtggtggccttcaccttc
tctcggacgcgatgcgacgagaacgcccgctcgctggactccatggacctcaccacctcc
atagagaaggcggagatccactccttcttccagaagagcctcagtcggctgcgaggagga
gaccggcagctgccgcagatcttgctcatgcgggaccttctgaagagaggcatcgccgtc
catcacagcgggatcctcccgatcctgaaggaggtcatcgagatgcttttctctcgaggt
ctcgtaaaggtgctgttcgccacagagacatttgcaatgggagtgaacatgcccgccagg
accgtggtgttcgatagcatcaggaaacacgacggcaccggcttcaggaacctgctgcca
ggcgaatacattcagatggcgggcagagcaggaaggagaggcctggacgccacaggaaca
gtcatcattttgtgtaaatcgggcgttcatgagatggccgatctgcacgccatgatgatg
ggaaaacccaccgtcctccagtcccagttcagactgacctacaccatgatcctgaacctg
ctgcgggtcgaagcgctccgagtgaccgacatgatgaggaggagcttctctgaaagccac
agagacactcaggcgcatgagaagaggatcagccacctgaagcagatgttggcgtctctt
cctcctctagagacagagggccagctctctgatatcttgccttattatcatacagcaacg
gagatgcagaacaccagagaagccctgcagaaagccatcctggagtctgtgaacggactc
aaagcgctgtctgttggccgagttgtcatcgtcaacaacaagcagcatcttaacgcgctg
ggagttattctacaggtgtccaacgacgctgtgaatcgcaccttcatggcgctcattatc
tgtgagaaggggaacgaggaagtggatagaaaggctgaggacaatgccactttccagcac
ctgtacaacacagctctgttcatacctgaaggtccatgcagccacacggtgcagaagtta
aaacttcaggacatatccgccatcacagtgaaaaccctcaaagtgatttccgacagaata
atcgataactacaacaagaggcaacagccgcggttcagggccgaacctcccggccaggcc
atctccacggcgacgcaggagctgctgcgcctggccgaggccaacccgggcggcgtggcc
accctggacccggtgaacgacctccagctgaagagcgtggacgtggtggagggctccatg
aggctccgtgtgcttcaggacagcctgcgggacttcaactgcgtccactcgcccaccttc
gcagagcagtttgctcgtattaaggagaggatgagcgttcaggaggagctggaccggctg
ctgttcctggtatcggaccagtccctggtgctgctgcctgaataccaccagaggatcaag
gtccttcagtcgctgcagtacatcgacagcagcggcgcggtgcagctcaaaggccgagtg
gcctgtcagatcagcagccacgagctgcttctgaccgagctgctgttcgagaacgtcctg
agcccgctggcgcccgaagagagcgccgccctgctgtcctgcctggtcttcacccagaac
acgcagacggagccgcacatcaccagcactctgaaggagagcatcgaccgcgtgctgtcg
gtggcccagcgaatcgggcagctgcagcgggaatgtgggatagcacagacgaccgaggag
tttgtaggccagttcaagttcggcttgactgaggtggtgtactgctgggccagaggcatg
ccgttcgctgagattgcgatgctcacagacgtgcaggagggcacggtggtccgctgcatc
cagcgcctggacgaggtgctgaaggaggtgcggcaggccgcccgcatcgtgggagactcc
gtcctgggcagcaagatggagaaagcctcgttggccatccgcagggacattgtcttcacc
gcctccctctacacccactga
DBGET
integrated database retrieval system
