Xiphophorus couchianus (Monterrey platyfish): 114156826
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Entry
114156826 CDS
T05908
Symbol
frem1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114156826 (frem1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
xco04091
]
114156826 (frem1)
Lectins [BR:
xco04091
]
C-Type lectins
Lecticans
114156826 (frem1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
114156826
NCBI-ProteinID:
XP_027893142
LinkDB
All DBs
Position
14:195174..265329
Genome browser
AA seq
2135 aa
AA seq
DB search
MGFPGHTLALSLLVVLLLLLTCSSLCSLIKVNKGLKVKRGQSIYLQEGDLQFHVPAKKDV
CKVEVVLNEPITQRVGKLVPQVFDCHYLSDEVKYVHNGCPLLKEDTVKLRLYSFTETNTY
MESFTLLVDIIAPECNIINMGPKFLQVSELYGLSNAIDGNVVSFHYERKPSLECNIHLSP
QEAHLPAHGKLVTGDPERAIKRGDEPESFIYLRQQLDDKARAMCASEDCLKHLKLVTVNK
VPCDDFLLMGIKYQHIDPPSPDVDYIAIRLDLKDTRSGSIYQSEQGWIPVRIAGGMPNQP
PKPSFMSMFILEVDQFILTPLSIATLDAEDEETPKQLLVFNITKHPEEGFITHLSDHTRP
VSSFTWLDLNDMLIAFQPPNSSHTQRRNYEVEIEVYDFFFVNSSPVTIHTSVRNADTDAP
RVSWNMGLTLLEGQSRPIMWDQLQIVDNDNRNIVRAVIVDGLQHGHLTVRDGKSFMFTIN
DIRAGVVCYHHDDSDSTKDFIIFRITDGHHQTRHKFPIKILPKDDSPPFLITNMLVEVSE
GQTTLLRGSTLKASDMDSSDDNILFNITRLPQAGEVMKIPGPGLTGYPVSHFLQKDLSQS
IMYYRHLGNKVIDDSFEVVLSDFHDPPNLSEPQVVVVHIESVPDQPPKEVPGSTRYLVIK
ETQVVHITRQQLHFVDQESPDNELTYTITTPPFYTDHYSGPDAGRLFLVDSVPKFTKDSN
TPVLRLFTQHAVNFMKVAYMPPIMDIGPYPRHIQFILSLTNHLGKTITGLCFNITLLPVD
NQPPQVVTKPLTVDEGGEHFLGPEHLQLSDVDSVPEALHVELQREPERGLLYLGGHPLTL
GQNFTLQDLIRRKVRYNHDGSETTEDTIVLTATDGINLVSFVLPVKVTPINDELPVMVTG
LKPVLRCPEGEEIIITSEYIFATDADSDNSSLGFLIARQPYHGVVLRNAVVVDRFVQSDI
TAGLISYRYTGLEIGVSPLHDTITFVISDGEIKTSALCCGGETPIRNKGISQPWDSLPVY
DLHITVFPVDNQPPSLAIGDIFTVDEGGTSLITAAHLKASDMDTVLDKLVVRLISPPQFG
YIENVLPSPGFEKSNRGISIASFLYKDITEGHINYVQSRHQQMEPTADQLMLCVSDGKHN
SANIPFYIIINPTNDEIPEFMAHNITVQEGEMKHLDSSVFHAMDLDIPKNALLFSVVTTP
RHGSIICHRTGNPISKRQEPNLWSPVVDFTMTDIKNGLDLVYLHDDSETMKDSFIIQLTD
GKHKLQRQVMVEVVPVNDEEPHMIRNNGLEVEPGEAKVISSITLFAKDKDTPSTEIMYIF
ELVPTQGILQLQEANKWVTLTPGRRCTQDMVDMNLLRYKHTGHHAIKTQDFFVFHLMDGK
NQSPPQHFHIFVKELEKENIAIFVKPVNVSFGERVVLTTDVLLATDGTDKPEELLYVITN
PPAHGHIEYIKHPGVIISTFSQMDIAANLVAYIHDNQASKATESFQFVISNGKTSRNGSF
ELCVEIVDRVLPSLTSNKGLQVPQGSAMILGPELLSLSDPDTPPRALTFVLRQPPQYGKL
ERAGVTLTAGSNFTQKHIKELEVTYRHDGGPSQIDRFAFTASDSSSQGFLLDGQLQTEPV
FFTIQIKPLDKSSPEVIRLVPLWKPELLHDGRYVIFVTSQELKAQDSGSREDELIFCIIR
PPYFGYLENITTGMFVSQRFPQIELNKRTIAYIINLHGEFLSDSLEFKVSDPLGNMGPSH
ILEFRWSRVEFSLPESSSCEEQGKISLDIIRNGNLAESSYVTVKVIEGTANAGKDFRTNP
SSLIQFDPGVAKRSWQTEIVEDHIEEADERFEVLLVSPEATVIGRISKAELTIRDSGNGQ
CWPNQDQQAPLLGGKEIRSDTYPQHGSIRLEKLPLATQSIIWGRGDSISPPREHLPKKIL
RVVSNRKSIAPSLVFHNETDVIYTYHGIMQKLVHDDTSPSRKSRKANIRVVSREPQHQVP
GLLTVAKSNTPKDELKAQMKGQAGEHMCPQGWTFQGGCCYIVSTKPKLTWSAANRACRER
FMGSLASVLSKSDMDWLWDFSGRKPFWIGLNSREREGWWEWAGGEPVSYTNWRKTPSHSK
MKRNRKCVLVWRNSKWQIRDCKRSRAHRFVCSVKL
NT seq
6408 nt
NT seq
+upstream
nt +downstream
nt
atgggttttccaggtcacacactggccttgtccttgcttgtggtgcttctgcttttactg
acctgctcatctctttgttcgctaataaaagtcaataaaggtttaaaggtgaaacgaggt
cagtcaatctacctccaggaaggggatctgcagttccatgttcctgctaagaaggatgta
tgcaaggtggaagtagtattaaatgagcccataactcaaagagtgggaaaacttgttcca
caggtgtttgactgccattatctgtctgatgaagtaaaatatgtccataatggctgtccc
ttgttaaaagaagacaccgtcaagctacgcctgtatagcttcacagagacaaacacatat
atggagtcatttaccctccttgtggacatcatagcgcctgaatgcaacatcattaatatg
ggtcccaaattccttcaggtctctgaattgtatggcctctccaatgctattgacggcaat
gtggtttccttccactatgaacgaaaacctagtctggaatgcaacatccacctcagtccc
caggaagctcaccttcctgcccacggcaaactcgtcactggagacccagagagagccatc
aagagaggcgacgagccagaaagttttatctacctacgtcagcaactagatgataaagcc
agagcaatgtgtgcatctgaagattgccttaagcacctgaagctagtgacagtcaataaa
gttccatgtgatgacttcctcctgatgggcataaagtatcaacacatagatccaccctct
ccagatgtcgattatattgcaatcaggctggaccttaaggacaccaggagtggcagcata
tatcagtctgagcagggctggattccagtcaggatagctggaggaatgcccaaccagcct
cccaaaccatctttcatgtccatgtttatcttggaggtcgaccagtttattctcactccc
ctctccattgcaacactggatgctgaagacgaggaaactccaaaacaacttctggttttt
aacatcactaagcaccctgaggaaggctttatcacccatctatctgatcacactcgtcca
gtctcctcctttacatggcttgatctaaatgacatgcttatagcatttcaacccccaaat
tcttcacatacccaacgaagaaattacgaggtggaaattgaagtttatgatttcttcttt
gtgaatagctcaccagtaactatccacacatctgtaaggaatgcagacacagatgcgcca
agagtgtcttggaatatgggtcttactctgctggagggtcagtctcgtcctataatgtgg
gaccagttgcaaatcgtggataatgacaaccggaatattgttcgtgccgtcattgtggat
ggcctccagcatggacacctaactgtaagagatggaaagagcttcatgtttaccatcaat
gacataagagcaggtgttgtctgttatcaccatgatgacagtgactccacaaaggacttc
atcattttccgaatcaccgatggccaccatcagacccgacataagttccccattaagatt
cttcccaaagatgacagccctcctttcctcataaccaacatgctggtggaggtctcagag
ggccagacgactctgctcagaggttccaccctcaaggcttcagacatggactccagtgat
gacaatatcctctttaacattactcgtctcccacaggcaggagaggtcatgaaaatccca
ggaccagggctgacaggctaccctgtcagccacttcctccagaaggatctttcacagtcc
atcatgtactacagacaccttgggaacaaggtgattgatgactcatttgaggttgtgctg
tctgatttccacgatcctcctaacctttcagaacctcaagtggtagtggtgcacatagaa
tcagttccagaccaaccaccgaaggaggttcctggttccactcgatatcttgtgatcaaa
gaaacacaagtggtccatataacacggcaacagcttcattttgtagaccaagagtcacca
gacaatgagcttacatatacaataacaactccacctttctatactgatcattacagtggt
ccagatgcagggaggttattcctggtcgacagcgtacccaaatttactaaagactccaac
acaccagttctcagactcttcacacaacatgcagtgaacttcatgaaagtggcttacatg
cctcccatcatggacattggcccttatcctcgacatatccagtttattctatctttgaca
aaccatctgggcaaaacaataactgggctctgttttaatattactctactgccagtggac
aatcagccgccacaggttgttaccaagcctttgactgtggatgagggaggggaacacttc
ttgggcccagaacacttgcagctgtcagacgttgactctgtaccagaagccttgcatgtg
gagcttcaaagggaaccagaacgggggcttctctaccttggtggtcatccacttacacta
ggacagaactttactctgcaagacctgataaggcgtaaagttaggtacaatcatgatggc
tcagaaactacagaagacaccatagttctcactgcaacagacggcattaatttagtcagt
tttgttctgcctgtaaaggtaacgcccataaatgatgagctcccagtgatggttactggt
ttgaaaccagttctcaggtgtccagaaggagaagaaataatcatcacttcagagtacatc
tttgccactgatgctgatagtgacaacagcagccttgggtttctgattgcccggcagcct
taccatggggtggttctgcgaaacgctgttgttgtagatcgcttcgtccaatcagacatc
acagcaggcctcatctcttacagatacacagggttggagattggagtatctcctctacat
gacaccatcacatttgtcatttctgatggagaaataaaaacatcagctttatgctgcggt
ggggaaactcccatcaggaacaaaggcatctcccagccatgggacagtcttcctgtctat
gacctccacatcacagtgtttcctgttgacaatcagcctccttcattggcaataggtgac
atttttacagtagatgaaggtgggacttcccttataactgctgctcatttgaaggcctct
gacatggacacagtcctagacaagcttgttgtcaggctgatttctcctccccagtttggt
tacatagaaaatgtcctccctagtcctggctttgagaaaagcaacagaggcataagcata
gcttcctttctctacaaggacatcacagagggtcatataaactatgtacagtccagacac
cagcagatggagcccacagctgaccagctcatgctttgtgtctcagatggcaagcataat
tctgctaacatccctttctatatcataattaacccaacaaatgatgaaatcccagaattt
atggcacacaacatcacagtacaagagggagaaatgaagcacctggactcatcagtgttc
catgcaatggacctggacatccccaagaatgccttgcttttctctgtggtcacaactcct
cgccatggcagcatcatctgtcacaggactggaaacccaatctctaagagacaggaaccc
aacctatggtctcctgtggttgactttactatgacagatattaaaaatggtttggatcta
gtgtatctgcatgatgacagtgaaaccatgaaagacagttttataattcagctgactgat
ggcaagcataagctccaaagacaggtgatggttgaagtggtgccagtgaatgacgaagag
cctcatatgatcaggaacaatggactggaggtggaaccaggagaagccaaagttatatcc
agtattacattgtttgcaaaggacaaagatacaccctccacagaaatcatgtacattttt
gaacttgttccaacacaaggaatacttcaacttcaggaagccaataagtgggtgacactt
acacctgggaggagatgtacccaggacatggtggacatgaacctgctacgttacaaacac
actggccatcatgctattaaaacacaggacttctttgttttccacctgatggatggaaag
aatcaatcaccaccacagcactttcacatttttgtcaaagagctggagaaagaaaacatt
gccatctttgtgaaaccagtaaatgtcagctttggtgagcgtgttgttctcaccactgat
gttctgctagccacagatggtacagacaagccagaggagcttctatatgttatcaccaac
ccacctgctcatgggcacatagagtacatcaaacatccaggagtgatcatctccaccttc
agccaaatggacattgcagcaaaccttgttgcttacatccatgacaaccaagccagcaaa
gcaacagaaagctttcagtttgttataagcaacggtaagactagccgaaatggaagcttt
gagctgtgcgtggaaattgtggatcgtgttctgccatcgctaacgtccaacaaaggtctc
caggtcccacaaggttctgccatgatccttggtccagaactcctctccttatctgaccct
gacactccacccagggctctgacttttgttctgcgacagcctccgcagtacgggaagctg
gaacgagccggtgtcacactgactgctggctcaaacttcacacagaaacacataaaggag
ctggaggtaacatatagacatgatggaggaccatcacagattgaccgatttgctttcaca
gcatccgactcctccagtcaaggctttctgctagatggacagctgcaaacagagcctgtg
tttttcaccattcagatcaagcctttggataaatcttcaccagaagtaataaggcttgtc
ccactttggaaaccagagcttttacacgatggcagatatgtgatttttgtgacttctcaa
gagctgaaggctcaggatagtggtagcagagaagatgagctgatattctgcattattcgt
ccaccatattttgggtaccttgaaaacattaccacaggtatgtttgtgtcacagcgtttc
cctcagattgagcttaacaaaagaactatagcctatattatcaacttgcatggtgagttt
ctgtcagacagcctggagttcaaagtgtctgatcctttaggcaacatggggccctctcac
atacttgaattccgatggagtagggtggagttttctcttcctgagtcctcgtcatgtgag
gagcagggaaaaatctccctggacatcattcgaaacgggaacttggcagaatcatcatat
gtcactgtcaaggtgattgaagggactgcaaatgctgggaaagatttccgtacaaatcct
tcctctctgatccagtttgatccaggagtggcaaagcgaagctggcaaactgagatagtt
gaagaccacattgaggaagctgatgaaaggtttgaggtgttgctagtttctcctgaagcc
acagtaattggtagaatcagcaaggctgaactcacaatcagagactcaggaaatggacag
tgctggccaaatcaggatcaacaagctcctcttctaggaggaaaagagattcgatcagat
acatatccccagcatggatccattcgtctggagaaacttcctcttgctacacaatccatc
atatggggcagaggagacagcatctcaccaccacgagaacatctccctaagaagatactc
agagttgtgagcaatcgcaaatctattgccccttcattggtgttccacaatgagacagat
gtgatttacacatatcatggaattatgcaaaagctagtacatgatgatacgtccccctct
agaaagagcaggaaggcaaacatccgggtggttagcagggaaccacagcaccaagtacct
ggacttcttactgtagcaaagtccaacactccaaaagatgaactgaaagcacaaatgaaa
gggcaagcaggagaacatatgtgtcctcagggctggacttttcaaggaggatgttgttac
atcgtcagcactaagcccaagctcacatggagtgcagctaacagggcctgcagagaaagg
ttcatgggaagtcttgcaagtgttctgtctaaatctgacatggattggttgtgggacttc
agtggaagaaagcctttctggataggtctgaacagcagggagcgtgaaggatggtgggag
tgggcaggcggtgagcctgtcagctatactaactggaggaagaccccttctcactccaaa
atgaagagaaacaggaagtgtgtgctggtgtggaggaactccaagtggcaaattagagac
tgcaagaggagcagagctcatcgcttcgtgtgctcagttaaactttga
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integrated database retrieval system
