Xiphophorus couchianus (Monterrey platyfish): 114156850
Help
Entry
114156850 CDS
T05908
Name
(RefSeq) transcriptional repressor CTCF-like isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114156850
03036 Chromosome and associated proteins [BR:
xco03036
]
114156850
Transcription factors [BR:
xco03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
114156850
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
114156850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-met
Zf-C2H2_ZNF451
zf-C2HE
zf-C2H2_6
zf-C2H2_15
zf-C2H2_ZN142
Motif
Other DBs
NCBI-GeneID:
114156850
NCBI-ProteinID:
XP_027893183
LinkDB
All DBs
Position
2:33205573..33218324
Genome browser
AA seq
919 aa
AA seq
DB search
MRFNVAPLLANQGAASVPTPPPSGRTGALSAQLPFCGRSYSAKAGEELKLTAKKRVVYSE
LVKLFSTASLLPGGTTGRRNTQKQLLLDMDGSSVEAVGEVDAPPKDFPSIQAVHSQEALV
VDLLQQAAEAGGVVQGPAAVILEQGHVEGMVAAAQSQQALLEAGVGVSVQRGEVEMMVMD
SLDPTLMQMKTEVIDAAVRGSSATVGVVAGAAHQAAVATVDQTQIITLQVVNMEEQAALG
LGELQLVQVPVSAAAVDALQQGTFVDTTAMPKSGDPVICHTLPLPEGFQVVKVGANGEVE
TVEQEEGVEAHSEEDEDDADVGQQLLEEGEEAAQPPNHHQNWAKDPDYQPPSGGIKKAKK
GKKSRLRYAEGDKDMDVSVYDFEEEQQEGLLSEVNAEKVVGNMKPPKPTKIKKKGVKKTF
QCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCTD
CDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSY
ASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI
ARKSDLGVHLRKQHSFIETGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDLCDYCCRQ
ERHMVMHRRTHTGEKPFACSQCEKTFRQKQLLDMHFKRYHDPNFVPTAFVCPKCSKTFTR
RNTMARHSENCNGEVEEFENGAATPKKGRRGRKRKMRSRRDEDDSEDDIPEQDEGEEEGE
EEAALLQEEEDLEGMELDQAPAVIPVVAPDEPPVKRKRGRPPKNPKPQTPSRAGTASSVA
AMIQVEDELTGAVENIIVKKEGGDAATSVKQGADLAVEGGVGGGEGVEEVELTVNQETTA
ATAANGDLTPEMILSMMDR
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcgttttaacgttgcgcccctcctggccaatcagggtgctgcatcagttccgacacca
ccccccagcggccgcacaggcgcactgagcgctcaactgccattttgtggcagaagctac
tctgccaaagcgggtgaggaattaaaactaactgcgaagaagcgtgtagtttattccgag
ctggttaaactttttagcactgcctctctgcttccaggcgggaccaccgggaggagaaac
actcagaaacagttgttgctagacatggatggcagctcagtagaagctgtgggggaggtg
gacgccccccctaaagacttcccatccatccaggccgtccacagccaggaggccctggtg
gtggatctcctccagcaggcagcagaggccgggggcgtggtgcagggaccggcggctgtc
atactggagcaaggtcatgtggaaggaatggtagcagctgcccaatcccagcaggcgctg
ctggaagctggggtcggggtgagcgtgcaacgtggagaagtagaaatgatggtcatggat
tccctggatcccaccctgatgcagatgaagactgaggtgatcgatgctgcagttaggggg
tcatcagccacagttggcgtggttgcaggagcagctcatcaggctgccgtggcaacagtg
gaccagactcagatcatcaccctgcaggtggtcaacatggaggagcaggcagctctgggt
ctgggcgagctgcagctggttcaggtgccggtttctgccgccgccgttgacgctctgcag
caaggcacatttgtggataccacagcaatgccgaagtctggagaccctgtcatctgtcac
acacttccactgcctgagggctttcaggtggtcaaagttggtgctaatggggaggtggag
actgtggagcaagaagagggagtagaggcacattctgaagaggatgaggacgatgcagat
gtgggacagcagctgctggaggaaggagaggaggctgcccagcctccaaaccatcaccaa
aactgggctaaagacccagactatcagcctccatctggggggatcaaaaaggccaagaag
gggaagaagagccgcctgcgctacgctgaaggagacaaggacatggacgtcagcgtgtac
gactttgaagaggagcagcaggagggccttctgtctgaggtcaatgcagagaaagtagtc
ggcaacatgaagcctccaaagcccacaaagatcaagaagaaaggggtgaagaagactttc
cagtgcgagctgtgcagctacacatgtcctcgtcgctccaaccttgaccggcacatgaag
agccacaccgatgagagaccccacaaatgtcacctctgtggaagagccttcaggacggtg
acgctgctgagaaatcatctcaacacacatacagggactcgaccacacaagtgcacagac
tgcgacatggccttcgtcaccagtggagaactggtgcgtcatcgtcgctacaaacacaca
cacgagaagccattcaaatgctccatgtgtgactacgccagtgtggaggtgagcaaactg
aagcggcacattcgctcccatactggggaacgtcccttccagtgcagtctgtgcagctac
gccagcagagacacatacaagctgaagagacacatgaggacacactcaggagaaaaacct
tatgagtgctacatctgccacgcccgattcacccagagcggaaccatgaagatgcacatc
ctgcagaaacacacagagaatgtggccaagttccactgtccacactgcgacactgtcatc
gcacgcaagagtgacctgggggttcatctgcggaagcagcactcgtttattgagaccggg
aagaagtgtcgctattgtgatgctgttttccatgagcgctacgctctaatccagcatcaa
aagtcccacaagaatgagaagaggttcaagtgtgacctgtgtgactactgctgccgtcag
gagcgccatatggtcatgcaccgacggacccacacaggagagaagccgttcgcgtgcagc
cagtgtgaaaagaccttcaggcagaagcagctgctggacatgcacttcaaacgctaccac
gaccccaactttgttcccacagcttttgtttgccccaagtgtagcaagacgttcacccgc
aggaataccatggctcgtcattctgagaactgtaacggggaggtggaggagtttgagaac
ggcgctgccactccaaagaaaggcaggagaggaaggaagaggaagatgaggagcaggagg
gatgaggatgatagcgaagacgacatccccgaacaagacgagggtgaagaggagggtgag
gaagaagcagcactgctgcaggaggaggaagacctggagggcatggagctggatcaggct
cctgctgttatcccagttgtggccccagatgagcctccagtgaagaggaaacgaggccga
ccccccaagaaccccaaacctcaaacccccagcagagctgggactgcttcttctgtggct
gccatgattcaggtggaggacgagctgacgggtgcagtagagaacatcatagtgaagaag
gaggggggcgacgcagcgacttctgtgaagcagggagcggacctggcagtggaaggaggg
gtgggtggtggtgagggggtggaggaggtggagctgactgtgaaccaggaaacaacagca
gctactgctgctaatggagatctcacaccagagatgatcctcagcatgatggaccgctga
DBGET
integrated database retrieval system
