Xiphophorus couchianus (Monterrey platyfish): 114157495
Help
Entry
114157495 CDS
T05908
Symbol
focad
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114157495 (focad)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114157495 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
TetR_C_30
Motif
Other DBs
NCBI-GeneID:
114157495
NCBI-ProteinID:
XP_027894316
LinkDB
All DBs
Position
14:4461880..4536689
Genome browser
AA seq
1819 aa
AA seq
DB search
MESFKTRFDFSNPLIQVQTVRNLVAAVLKEKGSNGQITHSSTQGPAMEALWQQCCSDSAL
VRSTCCDAVVLLVDQGHADLQFIHNSVLNLLPSARNVQGLIKVIGRLLQMQADQRQGDTN
FTCPYSIRSCPHPYITVLENRADCWPVLLLEIHDFICQAADRNKASYISMLVPFLRYLYC
EPQRQSQHALLRQSLLRVLLPTKPGAGWMPQSKDHKNTAVVSDSLLLCLCQLVSYLQVDS
VEAVLELCGFVDALLQGLMDAPGELWATERARLLVQLLCACHQCLKLNGDCRPLLSLIQQ
LLSACKMWPVDELMMGLALLLCEAPPDQQNSLFSLALRLSPEKAELSHWLSPVLVLPVLQ
LLSCSQLTEPLADPVTHSLNQSLAHSLLRSINKPTKKARQPGPTLTLPLSSWYAELSVAL
SILGRVSHDPCAATDWLLAVTSALTSSQRLSSSLALIVTYLLITAQEDICLLALKATQAI
AAADPCQVPSLLPVLLFKLSKETNPDLIHSVLNCLPNLGTHKLCVPMLLQTLHMLASSPK
LKAVAMRLMTALWKRQDRVYPELQRLLGQQDTRLVVGKDTQWEQTVARAACLRDICRERP
YQHGGDMLAAISLTLKQCNRPDLATPAALSLQGLQELCKAEVVDIISTWKSLGAELKCDS
RPLMVKAIAELLSLVPQLTVKSEEYEKLKEEVVSFLWSYAASQDPEVSSCGYKGLAAFPE
TDHTILHLPEATRPAVKVSESEDDAKGEEEEEKDLSIPGQSYMKLLALTSNSALPAFETF
LTSLVKHEMSQMPRGVYFSALRGGGLRSDQGKTVAGIPAFMLKTYEKNKQPGLKPGLAAG
LLLCYELPVQTDRSGKPIDRFLVTRSRSFQQTLTALIHEVNIQLSEWHRALLLPQAWRGF
MGRAFSALLQGRRSDLEMQQKQVKGDPQQLQYEQHCAWLWARDQLTDVIKTATKDSPVVQ
GNSILALSGLAAVVAKYENNLPTHSSGCMGAGPEFVPTPSWMCMVLDTLLSIISSGYKAK
GQLFPWFLHRSYSGENTASAIARSCASLALSLLVPVLVMWQKDALVQVLSALQASLPDAP
SADNSQAVQFHSGLAVGMVLSSLHHQNLSDVSAQEDTDVLSKTLNALEGCCFNPNLEYNT
GCVLGLGLVLSALCSRGRVEQQVHVSRTLDKLLDKLQDSSGQGRMLQEVLSYSVACVSVS
AFSRGLIHAAKAEEVLNALRTLTEESQQTPGFSLALGLVVHGLSVSGHGKAENIYPRLLA
AWIKILLAEGCPTMQRLAAANGLVALVGSESCLIQYQSELELSVQQQNRLNEVIRAITQV
ITFSGAMGLQANSACLIGHLHLAHMSTSHSHTTVPQDFNYLPESSIIRSIIDFLTEAGRK
GPEFSPPALVRTALTSMASVGAGFQFPPINWSAVLSPLMRLSFGEGVQHQCVVLAASQAQ
SSQSASLFLGSWLSQPLVHSLSHHTWAHLYQTLGVWMKQVAEDKLQMYVQNLGLQQFQRR
SLCVSLLRGMAQAMALPNPPSHCWTTLCSSVETAFSLLPSHIQDAEVDLYVGVARCLSEM
SDTEIDRIVQVSEAQVEKACFVLAFLTSQGRLPLLSLNDVITGVLCGWSSCRLGWILLQA
FYQCRLTAGTSTGVSKRMEWLLELMGHIRNIGYGATSISCGDTKKATDFLFQLFAAAVIS
WGDHFMPLLFGIRAQWFPWQPDSKPPVLEHGLYGSLSFSELALPQCMLGVSHSLPLLLGK
EPWSSQTHKFIDWLLSITEGPEENLSAVTISTARGAARFIPPPVYGSGLLQLLLYTALLG
LKSSAEFKKKAVWTRAFSW
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtttcaaaacccggtttgatttctccaaccctcttatccaagtccagacggtg
agaaatcttgttgctgctgtgctgaaggaaaaaggctcaaatgggcaaatcacccattcc
tccacccagggcccagcaatggaggctctctggcagcagtgctgcagtgacagcgctctg
gtgcgttcaacatgctgtgatgctgtggtgcttctagtagatcagggccatgcagacctg
cagttcattcacaatagtgtcctcaatctcctgccttctgccagaaatgttcaggggctt
ataaaggtcatcgggagactgctgcagatgcaagctgaccagagacaaggggacacaaac
ttcacctgtccctattctatcaggagctgtccacacccatacatcacagtgctggaaaac
cgagcagactgctggccggtgctgctgctggagatccatgacttcatctgtcaggctgct
gacaggaataaagcatcttacatcagcatgctggttcccttcctccggtatctgtactgc
gagcctcagagacagtcccagcacgcactgctccgacagagcctgctcagggtgctgctg
cccacaaagccaggggctggatggatgccccagagcaaggaccacaagaacactgcagtg
gtgtctgacagcctgctgctctgcctttgtcagctggtttcatatttacaggtggacagt
gtggaggcagtgctggaattgtgtggatttgtggacgctctgcttcagggtcttatggac
gcccctggagagctctgggcaacggagagagccagactgctggtgcagctgctgtgtgca
tgtcaccaatgcttgaagttaaatggagactgcagaccgcttctcagcctaatacagcaa
ctcctctctgcatgcaagatgtggccagtggatgagctgatgatgggtttggccttgctt
ctgtgtgaggctcctccagatcagcagaacagcctgtttagtctggctctgcgtttatct
ccagaaaaggcagagctgtctcattggctaagtccagtcctggttcttcctgtgctgcag
ctgctctcctgctctcagctcactgagccactggctgacccagtgacacacagcttaaac
cagagtctggcccacagtttgttacgcagcatcaacaaacccacaaaaaaggcccggcag
cctggcccaacgctgaccctccctctcagctcctggtatgctgagctcagcgtagctttg
tccatattgggcagagtttcccatgatccttgtgcggccactgattggctgttggctgtt
acttctgccctaacgtccagccagcgcctgtcctcttcccttgctctcattgtgacttac
ctccttatcacggctcaggaggatatctgcctactggctttgaaagcaacccaggccatc
gctgctgccgatccctgccaggtcccctctctcctccctgtcctgttgttcaaactatcg
aaggaaacaaatccagatttgatccattctgtgcttaactgcctgccaaaccttggcacc
cataagctttgtgtccccatgttgctgcagactctccacatgctggctagttcacccaag
ctgaaagctgttgcaatgcgcctgatgactgctctgtggaaaagacaggaccgagtctac
ccagaactacagcgtcttctgggtcagcaggacaccagactggtggttgggaaggacact
cagtgggagcagacggtggccagggccgcctgcctcagggatatctgcagagagaggcct
taccagcatggaggtgacatgctagctgccatctcactcactctgaagcagtgcaacaga
ccagacttggcaacccctgctgctctctccctgcaaggcttacaggagctgtgcaaagca
gaggtagtggacatcatctctacatggaaaagtcttggagctgagctgaagtgtgactcc
cgtccactgatggttaaagccatagccgagcttctgtcattggttccccagctcactgta
aaatcagaggagtatgagaaactgaaagaggaggtggtcagctttctctggagttatgct
gccagccaggatccagaggtatccagctgtggctataaaggtctggcagcttttcctgaa
acagatcacaccatcctccacctccctgaggcaaccagacctgctgtgaaggtttctgaa
agtgaagatgacgctaagggagaagaggaagaagagaaagatctctccatccctggacaa
tcctacatgaaactactggctctcacctccaactctgctctgccagcctttgagaccttc
ctgacatcgctggtgaagcatgagatgagccagatgccacgaggagtgtatttctctgct
ctgagagggggtggcctgcgttcagaccaaggaaaaactgtagcagggatcccagcattc
atgctcaagacctatgagaaaaacaagcagcctggactgaagcctggactagcagctgga
ttgctgctctgctatgagctccctgtgcagacggaccgcagtgggaagcccattgaccgc
ttcctggtcaccaggagccgcagcttccagcagaccctgactgccctcattcacgaagtg
aacatccagctgtcagagtggcaccgtgctctgctgctgccccaggcctggagggggttc
atgggccgggcgttcagtgctcttcttcagggccgccgctctgatctggaaatgcagcag
aaacaagtcaaaggggatccacagcagctgcaatatgaacagcactgcgcctggttgtgg
gccagagatcagctgacagacgtcatcaaaactgctacaaaggacagtcctgttgtacag
ggcaactccatcttggccctgagtgggctggctgctgtcgtcgctaagtatgagaacaac
cttcccacccacagcagcggttgcatgggggctggcccagagtttgtgcctactcccagc
tggatgtgcatggtcctggacacgctgctcagcatcatcagcagtggctacaaagccaaa
gggcagctgtttccatggttcctgcatcggtcatactctggggagaacacggccagcgcc
atcgcccgctcctgtgccagcctggctctgtccctgctcgtcccagttctggtgatgtgg
cagaaggatgctctggtccaggtcctctcagctctgcaggccagcttgccggacgccccc
tctgcagataactcccaggctgtccagttccactcgggcctggcagtgggcatggttctc
tccagcctgcaccaccagaacctcagcgatgtctctgcccaggaggacacggatgtcctg
tccaagactctgaacgctctggaaggttgctgcttcaaccccaacctggaatacaacact
ggatgcgtgctgggcctgggcctggtgctgtcagcgctctgcagcaggggacgggtggag
cagcaggttcatgtcagcagaaccctggacaagctgctggacaagctgcaagacagcagt
ggacagggacgcatgctgcaggaggtcctgtcttactcagtagcctgtgtgagcgtgtcg
gccttcagcagggggctgatccatgctgccaaggccgaggaggtcctgaatgcactgcgc
accctgactgaggagagccagcagactccaggcttctcattggctcttgggctggtggtt
cacggcctatcagtgtccggccatgggaaagcagagaacatttaccctcgcctgctggct
gcttggatcaaaattctgctggctgagggatgtcccaccatgcagcgcttggctgctgcg
aacgggctggtggctttagtggggtcagagagctgcctgattcagtaccagagtgaattg
gagctttccgtccagcagcagaacagactcaacgaggtcatccgtgctataacccaggtc
atcaccttctctggagccatggggctgcaggctaacagtgcctgtctgattggccatctg
cacctggcccacatgtccaccagccacagtcacaccacagttcctcaggacttcaactac
ctcccagagagcagcatcatcagatccataatcgacttcctcactgaagctggaaggaaa
ggtccagagttttccccgcctgctctggtccggaccgccctgacttcaatggcgtcagta
ggagctggtttccagttcccccccattaactggagcgctgtcctgtccccactgatgagg
ctcagctttggggaaggcgtccagcatcagtgtgtagtcctggcggcgtcccaggcccag
tcctcccagagtgcatccctcttcctggggtcctggctgtcacagccactagtccacagc
ctcagtcatcacacttgggcccacctctaccagacactgggtgtgtggatgaagcaggtg
gcagaggacaagctgcagatgtatgtgcagaacctgggcctgcagcagttccaaaggcgc
tccctgtgtgtctctctgctgcggggcatggctcaggccatggccctccctaaccccccc
agccactgctggaccaccctctgctcctccgtcgagacggccttcagcctcctgcccagc
cacatccaggatgctgaggtggatctgtatgtgggtgtggccaggtgtctgtctgaaatg
tccgacacagagatcgacaggatcgttcaggtgtcagaggctcaggtggaaaaagcctgc
ttcgtcttggcattcctcacctctcagggcagacttccgctgctcagcctcaatgatgtc
atcaccggcgtgctctgcggttggtcgagttgcagactgggctggatcctcttgcaggcc
ttttaccagtgccgactgactgctggcaccagtacaggcgtctccaagcgcatggagtgg
ctgctggagctgatgggacacatccggaacatcggctatggagcgacctccatcagctgt
ggagacaccaagaaggccactgacttcctgttccagctctttgctgctgctgtcatctcc
tggggtgaccacttcatgcccctcctctttggcatcagggcccaatggttcccatggcaa
ccagactccaagcctccagtgctagagcacggtttgtacgggtcactttcattcagtgag
ctcgctctgccgcagtgcatgctgggagtgtcacacagcctgccactgctgctaggcaaa
gagccatggagcagccagacacacaagtttatcgactggcttctcagcataacagaaggt
cctgaagagaatctgtcagctgtcaccatcagcacagccagaggtgcagcacgtttcatt
cctccacctgtttacggctcaggtctcctgcagctgcttctgtacactgctctcctgggt
ctgaagtcgtccgccgagttcaagaagaaagccgtgtggaccagagctttcagctggtag
DBGET
integrated database retrieval system
