Xiphophorus couchianus (Monterrey platyfish): 114157780
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Entry
114157780 CDS
T05908
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04382
Cornified envelope formation
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04518
Integrin signaling
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114157780
04518 Integrin signaling
114157780
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114157780
09142 Cell motility
04820 Cytoskeleton in muscle cells
114157780
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
114157780
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xco04147
]
114157780
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114157780
Exosome [BR:
xco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114157780
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114157780
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114157780
NCBI-ProteinID:
XP_027894725
LinkDB
All DBs
Position
14:8146272..8270680
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AA seq
1717 aa
AA seq
DB search
MKFLICVLTVSCVLRSTHGGGKSDEPCAGLDCSRGCKCFPEKGSRGRPGQMGEIGRPGPD
GPRGGLGPRGPKGEKGHIGLKGPSGDKGDKGPMGVPGFRGTDGVPGHPGQQGSRGPPGKD
GCNGTTGDPGLPGYGTGAPGFPGFQGPTGPKGQKGDPTYSSDNTEGVPGEPGPRGPSGPR
GPTGPPGSQGPRGIDGFPGFAGPPGPQGLEGSRGDIYRGGKGDKGDVGLPGEPGQPLINV
IVEFVGFPKGDKGLQGDPGPKGIKGYPGLPGPRGPFGYRGEDGEQGILGYPGPRGPTGFI
GPPGPSGLQGMPGQQGFPGQPGFLGPKGDQGDTGLPGPPSYSSDIGSFVQGPSGDPGFPG
RPGVTGDQGPSGITGPPGPPGSFRIGRPGPPGFPGGTGPKGDKGNPGEPIYSFEGSQGPP
GPDGPPGRPGPPGLPGPPGPQDNSGRPRDPCDRYPPDRPTDATERGRPGLPGPPGQTGYP
GNSGVKGFRGDLGDCNCGGGGGGRGRVGLPGLPGPQGPRGNFGLQGPKGEPGNRGSPGFN
GGPGAPGRVGERGLIGRKGQKGESPFFPSFGVKGDRGASGPRGPTGETGNPGRDGLSGFP
GPPGPPGVGGVGTTGEKGFPGFSGAKGRYGAPGEPGFGYPGIPGSRGEKGESGLPGFPGQ
PGSPGLKGDNRCGGVIDAGEGTGDSQPCITYGEPGEKGYPGSSGRPGPQGPPGFPGSFGR
RGSIGPKGEKGDPGFGGQPGPQGFPGPRGDPGVPGTPGVDYDGPKGKDGLPGLPGPKGQP
GEVLGARPGDPGVAGIPGANGDKGQPGSPGTPGSPGFDGRPGASGLKGERGVDGRPGIPG
LPGLPGGSTNPLPGPPGFPGSKGLIGPLGCPGNPGRKGERGDRGFPGPAGMKGTPGFPGE
NGGTGPRGPPGLPGPGTIPGRPGTPGRKGERGFSGLTGFPGRPGRPGNPGFPGEKGFPGD
RGRDGVPGGPGRFGLKGDGGDRGRPGLPGSAPILQKGPAGGVGAPGYQGFPGPRGDKGLP
GLPGRPGSPGRPGFPVDSKGQAGEPGFPGRPGQPGFPGTKGEGGIMGFPGVTGERGEDGS
PGFPGSPGGFGRPGAKGPPGETFAYPGAPGVKGQPGDPGFPGPRGIDGSLGDSGFPGRRG
SDGQKGGPGVTGRPGTMGPPGFQGPRGQPGFPGRQGPDGSPGLPGGPGGLGFKGLSGAPG
LDGLNGLAGPKGPPGIPGMTIGGNPGLRGAPGQKGERGVSFPGQPGFPGSKGLRGDSGTV
GAPGFPGLPGPPGPSTSSNFPGPVGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDTGDP
GLPGFPGIPGLKGEAGNPGGPGYPGFSGLKGAPGDNGLSGAPGLKGLPGEPGFYGFKGRP
GSPGRPGRKGPPAFSVPYVPVPGPLGEVGNPGYTGPPGGPGEPGQPGLNGRPGVKGRPGA
AGELGRTGPPGFPGPVGDPGFPGSQGITGDQGFPGAIGRPGIPGGVGRSIGVGYTLVKHS
QTTDVPMCPQGMDQLWEGYSLLYVEGQEKAHNQDLGQPGSCLPRFNTIPFLYCNPSETCY
YASRNDKSFWLSTTAPIPMMPVAEEQIRPYISRCSVCEAPSQAVAVHSQDLTLPNCPPGW
RSLWIGYSFLMHTAAGAEGGGQSLMSPGSCLEDFRSTPFIECNGARGTCHYFASKYSFWL
TTVDPRLEFGAPTQQETLKGGQERFRVSRCQVCSKIL
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgatctgtgtgctgactgtctcctgcgtgctgagatctacgcacggaggt
ggaaagtctgatgaaccgtgcgcaggcctggactgcagcagagggtgcaagtgcttccca
gagaaaggcagcaggggtcgtcctgggcaaatgggtgagatcggacggcctggaccagat
gggccgcgcgggggcttagggcctagagggcctaaaggagagaagggccatattggactt
aaaggaccatctggggacaaaggagacaaaggaccaatgggagtgcccggatttcgagga
actgatggagtgcctggtcacccgggtcagcagggcagcaggggcccaccagggaaggac
ggctgtaacggaaccacgggggacccgggtctgcccggctatggcacgggcgcgccggga
tttcctgggtttcaagggccaacggggccaaaaggtcagaaaggagaccccacctacagc
tcagacaacacggagggggtaccaggtgaaccaggacccaggggcccatctggtcccaga
ggtccgaccggcccgccgggttcccaaggtccaagaggaattgacggattccccggattc
gccggccctccggggccccaagggctagagggcagccgcggcgacatttatcgaggaggg
aaaggagacaagggcgacgtgggcttgcccggcgagcctggccagccgttgatcaatgtc
attgtggagtttgtgggttttcccaaaggagacaaaggactgcagggtgatcccggccca
aagggaataaaaggataccctggattacctggaccacgtggaccttttggttatagaggt
gaagacggggaacagggtattctcggatacccaggaccaagaggtcctacgggttttatc
ggaccgcctggcccttctggactgcaaggaatgccggggcaacaaggtttcccgggacaa
ccaggattcctgggacccaagggagaccaaggtgacaccggactcccaggacctccaagt
tactccagtgatattggatcttttgttcaaggaccctcgggtgacccgggttttcctggc
cgtccgggtgtcaccggtgatcagggaccttcaggaatcaccgggcctccaggaccgcca
ggctctttccgcattggtcgtccaggacctccgggttttcctggtggcaccgggccaaaa
ggagacaagggtaacccgggcgaaccaatttacagctttgagggttcccaaggtccccct
ggacctgatggtcctcctggtcgtcctggtcctcctggtctccccggtcctccaggtcct
caagacaactcaggccggcccagggacccctgtgataggtatcctcctgacaggcccaca
gatgccactgaaagaggccgccctggactcccggggccgcctggccagacgggatatcca
ggaaactcgggagttaaaggctttagaggtgacctcggtgactgtaactgtggaggagga
ggaggaggaagaggaagagtaggtctgcctgggttacctggacctcaaggacccagaggc
aactttggcttgcaagggcctaaaggtgagcccggtaaccggggttctcctggtttcaac
ggcggtccaggggcgcctggtcgtgtgggtgagaggggattaattgggcgtaaaggacag
aagggggaatcccccttcttccccagtttcggggtgaagggagaccgaggggcatctgga
cccagaggacctacaggtgaaacaggaaaccccggcagagacggtctgtctggcttccct
ggacccccaggacccccgggtgttggtggtgttggcacaaccggtgaaaagggtttccca
ggattttctggagccaaaggtcgatacggtgcccctggcgaacctggattcggctacccc
ggcataccgggctctcgaggtgaaaaaggagagtctgggctccctgggtttcctggacag
ccaggttcaccaggcctgaaaggtgacaaccgctgtggaggggttattgacgccggagag
ggaacgggcgatagtcaaccttgcatcacatatggtgaacctggagaaaaaggttatcct
ggcagttctggacgtccaggcccccaaggtccgcccggcttcccgggatcctttggaagg
cgagggtctattggccccaagggagagaagggagatcctggttttggaggccaaccagga
ccacaaggattccctggacccagaggagatcccggagttccaggtactccgggagttgac
tacgatgggcccaaggggaaagacggccttccaggacttcctggacccaaaggccagcct
ggagaagtcctgggagcaagacctggagatccaggagtggctggcatacctggtgcaaac
ggagacaagggccagccagggagtccaggaacacccggatcacccggcttcgatggacgg
cctggtgcttccggtctgaagggagagcgtggagtggatggccggccgggtattccgggt
cttcccggacttccaggtggctcaaccaatcccctccccggtccacccggatttcccggc
agcaaaggactcatcggcccactaggctgcccaggtaatcccggtcgaaaaggtgagcga
ggagatcgaggattcccgggccccgctggaatgaaaggaaccccggggttccctggtgaa
aacggaggaacaggtccgaggggaccccctggactgccaggcccgggaaccattcctgga
agacccggaacgccgggaagaaagggtgaaagaggattctcgggactgacgggtttcccc
ggacgaccgggtcgtcccggaaatccaggatttcccggtgagaaagggtttcccggagac
cgtgggagagatggggttcccggcggtcctggacggtttggactgaaaggtgacggagga
gaccgaggccgccctggtcttccaggctccgctcctattttgcagaaaggcccagcaggg
ggcgtcggagcccccggctatcagggctttcctggacctagaggtgacaagggtctccct
ggcctgcctggccgtccgggctctccgggacgtcccggtttccccgtggacagcaaaggc
caggccggagagccgggattccccgggcggcccggccagccgggcttccctggaacaaag
ggggaaggaggaatcatgggattcccgggcgtgacgggagagaggggtgaagacgggtcg
ccgggattccctggaagtcctggaggattcggtcgacctggagcaaaaggtccacctgga
gagacgtttgcctatcccggagcaccgggagtgaaaggccagcctggtgatccgggtttt
ccgggccctcgaggcatcgacggttcccttggcgacagcggctttccaggacgccgaggt
tctgatggacaaaagggcggtcccggtgtaacggggcgtcccggaacgatgggtccacct
gggttccaggggccgcggggtcagcccggattccctgggagacaaggaccagacggatcc
ccgggactgcccggaggtccaggtggcctcggttttaaaggtttgtctggagcgccgggg
ctggacgggctcaatggcctcgcaggtccaaaaggccctcctggaatcccaggtatgacg
atagggggtaacccaggcctccgcggtgcgccgggacagaaaggagagagaggcgtttcc
ttccctggacaaccaggcttccctggatcaaaaggactgagaggagattcgggaactgtt
ggagctccagggttccctggattacccggacctcctggtccgagtacttcatcaaacttc
ccggggcctgtgggagaccccggacttcctggattggatggagaatacggtttccagggc
cctcccggtcctcctgggccaccgggtccgggcacagcacagggagacacaggagaccca
gggctcccaggattccctggaatccccggcctgaagggagaagcaggaaatcccggaggc
cccggataccccggcttctctggcttaaaaggagctccgggtgacaacggactaagcggt
gctccgggtctgaaaggactgcccggcgagcccggattctacggattcaaagggcgtcca
ggatcaccggggcgacctgggcgtaagggtcctcccgcattctcagtgccgtacgtaccg
gtacctggacctcttggagaggttggtaaccccggctacaccggaccacctggtggtccc
ggagagcccggccagcctggtctcaacggacgtccaggtgtgaagggccgtcccggcgct
gcgggtgagctcggcaggaccggaccgcccggttttcctgggccggttggggatccgggc
ttccctggttcccaagggatcactggagatcaaggttttcccggagccatcggtcgtccc
ggtattcccggcggcgtcggccgcagcatcggtgtcggctacactctggtgaagcacagc
cagaccaccgatgttcccatgtgtccccaaggcatggatcaactgtgggaaggatacagc
ctgctgtacgtggagggacaggagaaggcacacaaccaagaccttggtcagccgggttcg
tgcctccccaggttcaacaccatccccttcctctactgcaacccatctgagacctgctac
tacgcgagccgcaacgacaaatccttctggctctccacgaccgcgcccatccccatgatg
cctgtggccgaggagcagatccggccttacatcagcaggtgttcagtgtgcgaggctccg
tctcaggcggtggcggtccacagtcaggacctaaccctccctaactgcccacccggctgg
aggagtctttggatcggatattccttcctcatgcacacagcagccggcgctgagggtggc
ggtcagtccctgatgtctcccggctcttgcctggaagacttccgatctacccccttcatc
gagtgcaacggcgccaggggcacctgccactacttcgccagcaagtacagcttctggctc
accacagtcgacccccggctggagttcggcgcgccgacacagcaggagaccctgaagggc
ggacaggaacgcttcagggtcagccgctgccaagtctgcagcaagatcttgtag
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