Xiphophorus couchianus (Monterrey platyfish): 114158433
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Entry
114158433 CDS
T05908
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xco03041
]
114158433 (prpf39)
Spliceosome [BR:
xco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
114158433 (prpf39)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_MalT
Ribophorin_II
TPR_10
Motif
Other DBs
NCBI-GeneID:
114158433
NCBI-ProteinID:
XP_027895713
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Position
15:complement(15795928..15803151)
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AA seq
768 aa
AA seq
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MLDTESTAMESNGNEFLPDLPAQAPDWSLEQVPPQPAASVAPEGSDSSQDDLAQEQQQSQ
QTNSSELGSVEKAVEQFQLANASLFQEEHPPPPPPPPPPPPTEDPDQPLQFATEPQPEAF
VPDGSQDGTEATQMEDGMELEEPARESSQEIPVPTEPTPSSEFEKLFKICEDSPEDFNAW
VSVLQYVEQENLLLPARKSFDVFFLRYPYCYGYWKKYADMEKKHGNLQVSEEVYRRGLQA
IPLSVDLWLHYLTFIKENSDPNDPETEGRIRASYEHAVLAAGTDFRSDRLWESYISWETD
QQKLANITTIYDRVLGIPTQLYSQHFQRFKDHVQGNHPKHFLSEEEFVQLRLELSKSSLS
GMVGEDGESNVPQEELPPGTEDLADPAKRMTEIENMRHKVIEVRQEVFNHNEHEVSKRWS
FEEGIKRPYFHVKALERTQLNNWKEYLDFEIENGTPERVVVLFERCLIACALYEEFWIKY
AKYLEGFSTDGARHVYKKACSIHLPKKPAIHLLWAAFEEQQGNVEEARGILKALEETIPN
LAMVRLRRVSLERRRGNLDEAEALLKEGMETANNDMESSFYAVKLARHLVKVQRSLSKAK
KVLLDAIEKDQTSSRLYLNLLELEFSGDVMQNQAEILACFDRALRSPLSLDSRIIFSQRK
VEFLEDFGSDINALVAAYEEQQKLQKESDSLKRTAENGYDSSQEPDAKRQRLDDPSAVAA
NAMTDMQANSSAYNYNWYQQQYGGWGQNSWGQYNQYAQYNQYYPPPPT
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgctggacactgagtccacagccatggagagtaatgggaacgaatttcttcctgacctt
cctgctcaggcaccagactggtccttggagcaagttcctccacagcctgccgccagcgta
gcgccggagggctccgattcttctcaggacgatctggcgcaagagcagcagcaaagccaa
caaacgaactcctccgagctgggatccgtggagaaggctgtggagcagtttcagcttgcc
aacgcgtctcttttccaagaagagcatcctccgccaccgccgccgccccctccgccacca
cctacagaggatccagaccaaccgctgcaatttgctactgagcctcagccagaggctttt
gtgccagatggaagtcaagatggtaccgaagccacacagatggaggatggcatggagttg
gaagaaccagcccgagaaagttcacaggaaattcctgttccaacagaaccaaccccatcc
tcagagttcgaaaagctttttaagatctgtgaagacagcccggaagacttcaacgcctgg
gtttcggtgctgcagtacgtcgagcaagaaaatcttcttctccctgcaaggaaatcgttt
gatgtctttttcctacgctatccctactgctatggctactggaagaaatatgcagacatg
gagaaaaaacacggcaacctacaggtttcagaagaggtatacagaagaggcttgcaggct
attcctcttagtgtggacctttggcttcactacctcacctttatcaaagagaactcggac
cccaacgatccagagacggaaggacgaattcgagcctcctacgaacacgcagtgctcgca
gcaggcacagatttccgatctgaccgcctctgggaatcctacataagctgggagacggac
cagcagaagctggctaacatcaccaccatctacgatcgcgtcttaggcataccgacgcag
ttgtactcccagcactttcagaggttcaaagatcatgtgcagggcaaccaccccaaacac
tttttgtcagaagaggagtttgttcagctcagactcgagctctctaagtctagcctgtct
ggaatggtcggtgaagacggagagtcgaacgttcctcaggaggagctgccaccgggtacc
gaggacctcgccgatcccgccaagaggatgacagaaattgaaaacatgcgccacaaagtg
atcgaggttcgacaggaagtgttcaaccacaacgagcacgaagtcagcaagcgctggtcc
tttgaagaagggattaagcgaccctacttccacgtcaaagcgttggagagaacgcagcta
aacaactggaaggagtacctggacttcgaaatcgagaacgggaccccggagcgcgtggtg
gtcctctttgagcgatgcctcatcgcgtgcgccctctacgaggagttctggatcaagtat
gctaagtatctagaaggcttcagcactgacggtgcgagacatgtgtacaagaaggcgtgc
tccattcacctgcccaagaaacctgccatccaccttctgtgggcagcatttgaggagcag
caaggcaacgtggaagaggctcgcgggatcctgaaagccttggaggaaacaatcccgaat
ttggccatggttcgtctccgcagggtcagtctggagcgtcgccgcggcaacttggatgaa
gcagaggccctgttgaaggagggaatggagaccgcaaataatgacatggagtcgtcgttc
tacgccgtgaagctggctagacacctggtgaaggtgcagagaagtctgagcaaagcgaag
aaggtccttcttgatgccattgagaaagaccagactagttcgagactatatctaaacctg
ctggagctggaattcagtggagatgtgatgcagaaccaggcggagatcttggcttgcttt
gaccgggccctgaggagcccgttgtccctggactcccgcatcattttctcccagcgcaaa
gttgaattcttagaagactttggcagtgacatcaacgcactggtggctgcgtacgaggaa
caacaaaaactacagaaggaaagcgactctttaaagagaacagctgagaacggatatgac
agttctcaagaacctgacgccaaaaggcagagactagacgatccttctgcagttgcagca
aatgcgatgacggacatgcaggcgaacagctctgcatacaactacaactggtaccagcaa
cagtatggcggctggggacaaaattcctggggacagtacaaccagtatgcccagtacaac
caatactaccctcctcctcctacatga
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