Xiphophorus couchianus (Monterrey platyfish): 114158481
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Entry
114158481 CDS
T05908
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114158481 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114158481 (hbs1l)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
114158481 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
114158481
NCBI-ProteinID:
XP_027895805
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Position
15:complement(13019605..13046419)
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AA seq
835 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCISPATANQFIYSRRELQAPKEEPLEEEEY
EDEDVPMSPCVDFNLDPLNQAKLFSCLDHMRAVLGDAVPDSVLTQAAMKHGFDPQRALDA
VLSEDSKTAPVTRSAAEDMPSVGRVAQEQTPLPQRTKQEAVAEKGACLFHTDNTPKAHKA
TQPSEINMQNILLQHKPDPVKSNSVKENIHPESSHLGISCGTSLAQLMSEHEQKSKTGVS
DTGRGVAVSSLSTLTSASNSQLTTASNRSGFSLGTLASLQMTSTPQTPTPSILSVSLAKS
RDAAPDKLDSEVVPKVARMTVSGKKQTMGFDVPSSGENGVVASPARRGDSPENTKATPVP
EAAPKRPETPSKASNGDEISASATPGRSSGKTRHAINIKAELERRQGGKPLLNLVVIGHV
DAGKSTLMGHLLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVG
MTKFETNSKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREH
ALLVRSLGVTQLAVAVNKMDQVNWQQERFQEISSKLGHFLKQAGFKESDVFFVPTSGLSG
ENLTARSTVSELTSWYSGHSLLEQIDAFKAPQRSIDKPFRLCVSDVFKDQGSGFCVTGKI
EAGFIQTGDKILAMPPNETCTVKGITLHDEALDWAAAGDHVSLTVTGMDIIKINVGCVFC
DPKEPIRVCTRFRARILLFNIEVPITQGFPVLLHYQTVSEPATIKKLISVLHKSSGEVLK
KKPKCLSKGMNAVVEIQTQRPVSLELYKDYKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccacagaaatgttcgaggttacaactacgatgaagactttgaagatgacgac
atgtatggacagtctgtggaggatgactactgcatttcaccagcaacagccaatcagttc
atctattcacgccgagagcttcaagcacctaaagaggagcctctggaggaggaagaatat
gaagatgaggatgttcccatgtccccttgtgttgacttcaaccttgaccctcttaatcaa
gcgaagctgttctcctgtctggaccacatgcgagcagtactgggagatgcagtgccagac
tccgtcctgacccaggctgccatgaaacacggatttgatccacagagggctctggatgca
gtgctgtctgaagacagtaaaacagcaccggttaccagaagtgcagcagaagacatgccg
tcagtgggccgagttgcacaagagcagacgcctcttccacagagaaccaagcaggaggcc
gttgctgagaaaggagcctgcttgtttcacacagacaacacacccaaggcacacaaagct
acacaaccaagtgaaatcaatatgcagaacatcttattgcaacataaacctgacccggtg
aaaagcaactctgtcaaggaaaacattcaccctgaaagttctcatttaggcatcagctgt
ggtaccagtttggctcagctcatgtctgagcatgagcagaagagtaaaacaggagtgagt
gatacagggcgaggggtggctgtttcctccttgagcactttaacatcagcatctaattcc
caactgacaactgcgtctaacaggagtggtttttcacttggaacgctggcatctttacaa
atgacttcaacaccacaaacaccaactccctccatcctttctgtctcactcgcaaaaagc
agagatgcagctcccgataaactggactccgaagtggttcccaaagtcgccagaatgacc
gtctctggcaagaagcagactatgggcttcgatgttcccagctcaggggaaaacggcgtt
gtcgccagcccagcacggcgaggtgacagccctgaaaacaccaaggcgactccggtcccc
gaggccgcacccaaacgaccagagaccccatccaaagcgtcaaatggagacgagatctct
gcctctgctacaccaggacgctcctccggaaagacgcggcatgcgatcaacatcaaggca
gagctggagaggagacaagggggcaaacctctgttaaatttagtagttataggtcatgtg
gatgcaggtaagagcaccctaatgggccacttgctttatctgctgggaaacgtcaacaag
cgcaccatgcacaagtacgaacaggagtcgaaaaaggctggaaaggcctcctttgcctat
gcctgggttctggatgaaactggcgaggagagggacagaggggtgacaatggatgtgggc
atgacgaagtttgagacaaactcaaaggtggtgactctaatggacgctccgggacacaaa
gacttcattcccaacatgatcacaggcgctgcacaggctgatgtcgcggtgctcgtggtg
gacgccagcagaggagagttcgaggcaggctttgaagcagggggtcagaccagagagcac
gccctgctggtgcgttcgctgggtgtcactcagctggctgtcgctgtaaacaagatggac
caggtaaactggcaacaggagcgtttccaagaaatcagctcaaaacttggccattttctg
aagcaggcaggattcaaggagtccgatgttttctttgtccccaccagcggcctctcagga
gaaaatctcactgcaagaagcacagtatcagagctgacatcttggtacagcggacacagc
ctgctggagcaaattgatgcattcaaagcccctcaacggtcaatagacaaacctttcaga
ctgtgcgtctcagatgtgttcaaagatcagggctcaggcttctgtgttacagggaagatt
gaggctggttttattcagacaggagacaaaatactggcaatgcctcccaatgaaacctgc
acagttaaaggaatcactcttcacgatgaggcgctggactgggctgcagccggagaccac
gtcagcctcacagtcactggaatggacatcatcaagattaatgtcggctgtgtgttctgt
gatcccaaggagccgattcgagtctgtactcgattcagagccagaatcctgctcttcaat
atcgaggttcccatcacacaaggctttccagtactgttgcattaccagacagtcagcgag
ccggccactattaagaaactaatcagcgttctgcacaagagcagtggtgaagtcctaaag
aagaagccaaagtgtttgagtaagggtatgaatgcggttgtggagattcagacccagagg
ccagtgtcattagagctatacaaggactataaagaactgggccgcttcatgttgagatac
gttggctccaccatcgctgcaggtgtcgtcacagagatcaaagaatga
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