Xiphophorus couchianus (Monterrey platyfish): 114158716
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Entry
114158716 CDS
T05908
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114158716 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xco03041
]
114158716 (cdc40)
Spliceosome [BR:
xco03041
]
Complex C
Other components
Step II factors
114158716 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_RFWD3
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_NWD2_C
Beta-prop_SCAP
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
114158716
NCBI-ProteinID:
XP_027896294
UniProt:
A0A3B5L7X4
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Position
15:complement(10813157..10828745)
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AA seq
581 aa
AA seq
DB search
MSAAIASLASYGSDSDSENESESKTSIEKVDPDHPDATAHLKPLQSGPTMSLAVLNSAPE
VAVKEAVETGIHLDPSLKEVTYNPTYETMFAPEFGPMNPYKSQQMSAPRNMLSGYAEPAH
VNDFMFEQQRRTFSTYGYALDPSVDTHEASSCSYIGAVEEAEKNKGLTVFESGQKKPEKR
KKVKGGDAGEIDNFLGPWAKYVDEKDVAKPSEEEQKELNEITAKRQKKGRNEDEAPGEEK
TILHVKEMYDYQGRSYLHVPQDVGVNLRSTDAPDKCYLPKKQIHVWSGHTKGVSAIRLYP
RSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNNSGTQFLSAAYDRYLKL
WDSETGQCISRFTNRKVPYCVKFNPDEDKQSLFVAGMSDKKIVQWDIRTSEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgccatagcttccctcgcttcgtacgggagtgattccgactccgaaaacgag
tcagaatccaaaaccagtatcgagaaagttgatccggatcatccggatgccacggctcac
cttaaacctctgcagtctggacccacaatgtctttggctgttcttaattcagccccggag
gtcgctgttaaggaggctgttgagactggcatacacttggacccttcactgaaagaagtc
acttataacccaacatatgaaacgatgttcgcacctgagtttgggccaatgaatccgtat
aagtcccagcagatgtcggccccaaggaacatgctgtctggctatgcagaacctgctcac
gtcaacgattttatgtttgaacagcaaaggaggactttctctacttatggttatgcttta
gatccttctgttgacacacatgaagcttcctcttgtagctatattggtgctgtggaagag
gctgaaaaaaacaaaggactgactgtctttgaaagtggtcagaagaagccagagaaaagg
aagaaggtcaaaggtggggacgcaggagagattgacaacttcctggggccgtgggcgaaa
tatgtggacgaaaaagatgtggccaaaccgtcagaggaagagcagaaagaacttaatgag
atcactgctaaaaggcaaaagaagggaaggaatgaagacgaggctccaggagaagagaag
accattcttcacgtcaaagagatgtatgactaccagggcaggtcatacctccatgttcca
caggatgtgggcgtcaacttacgctctacagatgctccagataaatgttacctgccaaag
aaacagattcatgtctggtctggacacaccaagggtgtcagtgctatccgattatatccc
aggtctggtcatcttctgctctcctgttccatggactgcaagatcaagctgtgggaggtc
tacggagagaggaggtgtctccgcacatttattggtcacagcaaagcagtgcgagacatt
tgcttcaacaacagtgggactcagttcctcagtgctgcatacgaccgctaccttaaactg
tgggactctgagacaggccagtgtatctctcgcttcacaaacaggaaggtaccctactgc
gtcaagttcaatccggatgaggacaagcagagtctttttgtggctgggatgtcggataag
aagattgttcagtgggacatcaggactagcgaggtagttcaggagtacgatcgccacctg
ggtgctgtcaacaccatcacctttgttgacgaaaatcgccgctttgtcagcacgtcagac
gataagagtttgcgagtctgggagtgggacatccctgtggacttcaagtacatcgctgag
cccagtatgcactccatgccagctgtgactctatctcccaatggtaaatggctggcgtgc
cagtccatggacaaccagattcttatctttggagcccagaatcgcttcagactgaacaaa
aagaaaattttcaaaggtcacatggtagccggctacgcctgccaagtggatttctcccca
gacatgagctatgtggtatcgggggatgcagatggaaagctgaacatctgggactggaag
accaccaagctctatcacaggatcaaggctcacgacaaagtttgcatcagtgctctgtgg
catccgcacgaaacctcgaaggtcatcacctgtggctgggatggacagatcaaactctgg
gactaa
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