Xiphophorus couchianus (Monterrey platyfish): 114158802
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Entry
114158802 CDS
T05908
Symbol
spg11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
114158802 (spg11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xco03400
]
114158802 (spg11)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
114158802 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
HTH_Mga
MDH1B_N
NLRX1_C
SteB
Motif
Other DBs
NCBI-GeneID:
114158802
NCBI-ProteinID:
XP_027896470
LinkDB
All DBs
Position
2:complement(31087001..31115471)
Genome browser
AA seq
2397 aa
AA seq
DB search
MFDGQNSIEVLVIPENQRCGQLADIQKAELCPAGSLLCCLGVSGQLLVWDPGDRGAPPAA
SDGCFVDFCWEEANTSVWGVSSFNLLAVGSQGDITLFEAEAEQSTPVSLLTVQKCNVDNL
LEIVKGSDKSVCELVSVQVLSFMANQCCVLVNNEWILQLQWEQASQEPKTISCCRIQLTT
SDRHTAVHHCVCAETLFVLSSSGLIYVYAITDGSLLASINIPSYLSSGWPDGGLTSSSLS
SSSSSSSFCLFQVSADLCTAVAVTQSHAAVAVNLNHYFREHPEHLHCVGPQSSSSLQPKD
PGDQDALSSSSLAAVGSPFSDNRAWDTCLASMYARVQQAAYPSSPSKSAGVPWFHSLPHL
QSHPAAMSSHSRVPPSGATVAFSVLDSSIPSLLAVSEFSALLTFVAPGNTHTTVALWDME
SGRTSYHQAEGTAVPVQHSGERQHRLLLKRSGVFQVLFSMSQEDLLSRLMLFGSAATVDT
VCHLNNWGHCSIPFHALQAGLKNRQLDTVDLYLKSKENVLNPSAAAGFSEQLAESKLSLK
DSVQELLPALDLLCSAVRELNSEAQSRQFSEQLLNLTMSFINTQIRSVLLWPHYEQSDVQ
SNVEVLGKYVTELRGYMKRFPWASGDSTSDTSAPLQGAKTDDWEQLSTQEVIHQSILTNQ
IPRAQAVMWRQSRPEKQLSALRMVGLRQVLSCLQCKDLKSAKKFLTNMGLSVKKELHSIC
LYTNNKDLRELLVEDLSKQSSLTEEELDGVSFICEIENFGLLPAVFCPANPLSQRLPQMV
HKELDGEEVLKELVGQSSEEEGELWRNLRLDWVKTWDQSCQTAVRLSRLQHIELSCCDPA
VLWHYLTAFHHHQKVVDWIHNQRTFGSPCWPDITPEMVNNNTVCSIFFKENILDLLAGKG
VFIPDEMSDLEQLLWRLAQGAGLMTSSPPVSQYCSPVGLNLHSVFIALCLEHNLQYLLYT
YLEHYRLTPRNCPLLTDQNLLGSQPWFEMMVKTQEITRDLSEPEPVFQASLTSAQVLLPG
SQASLSSLLFEGHSLLALASIMFAHGGIDKVVAQGQSSTGLEGTVDPQLLKMALAPHYKL
RAALFPSGNGSSTDISIYHLLQSLHPLDPSRLFSWQTANPLNCTETSELPHFSSSHLVDK
FAIVENLDFLYYIHHGRPSFAYGNFLIQQLGVCSDVRLLLQTVWLQVYRLALKCFNKPSV
TSSAVCFCELLGISSLTLRVDIRAMNTILQHWNQLDRHTPTQNLRALMSKAGKLVNGEPG
AAAELLCYLEAAVADSLEQRGVSRSSFEAAQEWALPVQFCQLHSLELSLVYPSHCAEDRQ
FVHFLLFVQLHSFPPQQVRSLVGLFDPILQAHLSLAFQDLQVHSQRRSRDPEERLGFLRT
DVAPGGSEHGGELFQVLLQSQEKQVSWRFVLHEAIVRHCPMLAVLAACLQGTDLLSCLCV
WMLTSVVDATTEEATSHLAEAPQDHEWTLHDLSIIWKTLLSQGHIRVLLRGFELFQQDCP
LVLVLRMFELCCDYRKFAEAKTKLLDFQRTLITLRNGGPAAAGSLPLQWVESQASALLLT
MLLRCSSQYDLHQLLQLLADVDKLLKSNGPDLRKLSQLSQLLQGSGVTLSQSLLQCIPPS
VQQEEFQLIVDALQTGGHYSQARQVAVLAGLPVHRLLMSQLLQEVNVHKSKWRWRRLETR
VAFWNKCHRRLEADSTDPESAAQFFLSQSEAAAGPDGDQAQTNVLDIQECCLLLQLTAHW
LSLQTPVPVDELQRLEKKLWFCQVQKHILTATVEEKSMFKLLPPAITSETNEYETFMKEF
SFSNIADLNMEKYLSLEGFPEKPEELEAESDLSSEERRVLAILIDQLLDKGSIHEASRVC
RYFSMHSPDVWLVLCCHALACGFLVPEPQEQTSEPAETKALTQSPSLSSLSSFVMVPLHE
DTVTVQIQKRVEQCRHGSSYCKQVLSLYQLSKELQCPFSHISREEPHSVLEKLLLLVQPD
RFRMAKTFIKTQGLGADSVAELVSNAVVQGLLAATQELQSGERLIFRPSEGQDSLLQLIR
LCEDPNIVGLKLLENLNTVPLRDLNSIVELLIVAHSCFSLTCNMEGIVRVLQAARHLSHT
YLAPGEHYSLLVRLLTGIGRYNEMTYIFDLLHQNHCFEMLLRKKVDRDIGQSSSLKTSLL
DYIKRCLPADSEKHNMVALCFSMRREIGENHEIAARTQLKMIESQDWVVTPDLKNSLVKV
LGLLKDAAESFSKDSCVHRAGRCVRAAKLITLQLHLLNQGSTLRIINLKPAEMHSAIMAL
PQCYQVFVVAEAYSYSPDWAEILYQKVVLKGHFVYLEELKCHRPLTSALFEDIFRKLDSV
PSSVCSNAKRLLSHCDDVYTRYRLAYQQNLYDVTKTLLQDNKTSCYMNDRLASKAFI
NT seq
7194 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgggcagaactcgatagaggtgctggttattcctgagaaccagcgctgtggt
cagcttgcagacatccagaaagccgagctgtgccctgcgggctccctgctctgctgcctt
ggcgtctctggccagctgttggtgtgggaccctggggacagaggggcccctccggctgca
tcggacggctgctttgtagatttctgctgggaggaggcgaatacaagcgtttggggagtc
agcagctttaatttgttggctgttggctcacagggtgacataacgttattcgaggctgaa
gcagaacaatccaccccagtttctttgctgactgtgcaaaagtgtaatgtagataatctg
ctggaaattgtcaaggggagcgacaaaagtgtgtgtgagctggtgtctgtacaggtgttg
tcctttatggccaaccagtgctgtgtactggtaaacaatgagtggattctgcagctgcag
tgggaacaggcatcacaagaaccaaagacgatctcctgctgcagaatccagctaacaacc
agtgacagacatactgctgttcaccactgtgtctgtgcagaaaccctatttgtcctcagc
tccagtggactcatatatgtgtatgccattactgatggttctctgctggccagcatcaac
attccttcctacctgagctctggttggccggatggcggcctgacttcctcttcactctcc
tcctcctcttcctcctcctccttctgccttttccaggtgtcagcagatctctgcacagct
gtagctgtaactcagtctcatgcagcagttgccgttaatcttaaccactacttcagagaa
cacccagaacacctccactgtgttggcccccagtcctcttcctcacttcagcccaaggat
ccaggagaccaggacgccctgtccagctccagtcttgctgctgttggttcaccgttcagt
gataaccgtgcctgggacacttgtctagcatccatgtatgccagagtgcagcaggcggct
tatccctcatccccctctaagtcagcaggggttccatggttccactcgctcccccacctg
cagtcccacccagctgccatgtcctcccacagcagagtgcctcccagtggggcgaccgtg
gccttctctgtccttgactcatccattccatctcttcttgccgtttctgagttctctgca
cttttgacctttgttgctcctggcaacacacacacaacagtggcattatgggatatggag
tctgggagaacgagctaccaccaggctgaaggaacggctgtgccagtgcagcacagtgga
gagagacagcacagactgctgctgaagaggtccggtgtgttccaggtcttgttttccatg
tcccaggaggatttattaagcaggttgatgttgtttggcagtgcagcaacagtggacaca
gtctgtcaccttaataactgggggcactgctccattcccttccacgcgctgcaggctggg
ctgaaaaaccgacagcttgacacagtggatttgtacctgaaaagtaaagaaaatgtcctg
aacccatcagcagcagctggtttttctgagcagttagcagaatccaaactgagtctcaag
gacagtgtccaggagttgttgcctgcgttggatttgttgtgttcggcggtcagagagctg
aacagtgaagctcagagccgacagttctctgagcagctgctcaacctcaccatgagcttc
attaacacacagatccgctctgtgctcctctggccacattatgagcagtcagacgtgcag
agcaatgttgaagttctgggcaagtatgtcacagagttgaggggttatatgaagagattc
ccctgggcttcaggcgactccacatctgatactagtgctcctctccagggagcaaagact
gatgactgggagcaactttcaacgcaggaagttatccatcagtcgatcctgaccaatcag
atcccccgagctcaggccgtaatgtggagacagagccggcctgaaaagcagctgtcagct
ctgaggatggtgggcctgcgccaagttttgtcctgcttgcagtgcaaggacctaaagtct
gccaagaaattcctgaccaacatgggtctcagtgtgaagaaagagcttcacagcatctgc
ctttataccaacaacaaagatctccgggaattgttggtagaggatctgtcaaagcagagt
tctctgactgaagaagagctggacggcgtctcgttcatctgtgagatagagaactttggc
ctgctgcctgcagtcttctgcccagctaatcccctttcacaacggttacctcagatggtt
cataaggagctagatggtgaagaagtgctgaaggagttggtgggacagagttctgaggag
gagggagaactctggaggaatctccgcctggactgggtgaagacctgggatcagagctgc
cagacggctgttcgcttatccaggctgcagcacatagagctgagctgctgtgaccctgca
gtgttgtggcactacctgactgcttttcaccaccatcagaaggtggttgactggattcac
aatcaaaggacctttggctccccctgttggccggacataactcctgagatggtcaacaat
aacacagtgtgcagcatcttcttcaaggagaacatcttggaccttctagctgggaaaggt
gtatttatcccagatgagatgtcagacttggagcagctgctatggcgactggctcagggt
gctgggttgatgacgtcatccccccccgtatctcagtattgctcccctgtcggccttaac
ctacacagtgtcttcattgcattgtgcctggagcataatcttcagtacctgctttatacc
tacctggagcactacagactgacgcccagaaactgccccctccttaccgatcagaacctg
ctggggagtcagccctggtttgagatgatggtgaagacccaggagataaccagagacctg
tcagaaccagaacccgtgttccaggcgagtctgaccagcgctcaggtgctgctacctggt
agccaggcctctctgagcagcttactgtttgagggacacagtctgctggcgctggcttcc
atcatgtttgctcatggtggaattgataaggtggtggctcagggacagagttcaacaggt
ttggaggggactgttgacccccagctcctgaagatggcactggcccctcattacaagctg
agagccgccctcttcccatctgggaatggctcatccactgacatctctatttatcacctt
ctccagtcgcttcaccctcttgacccatccaggctctttagttggcagactgcaaaccct
ctgaactgcactgaaacatccgaactgcctcatttttctagctctcacctggttgataag
ttcgctatagtagaaaacctggactttctttactacatccatcatggtcgaccatctttt
gcatatggaaactttctcatccagcagctgggggtctgcagtgatgtgcggttgctgctc
cagacggtctggctgcaggtgtacagattggctctgaagtgtttcaacaagccgtctgtg
acatcgtctgctgtgtgtttctgtgagctgctgggaatctccagcctgacgctgagagtc
gacatcagagccatgaacaccatccttcagcactggaaccaacttgacaggcacacacca
acgcagaatctgcgagcattaatgtctaaagcaggaaagctggtgaatggagagccggga
gctgcagcagagctgctttgttacctggaggctgcagtggcagacagtctggagcagagg
ggggtcagcaggtcgtcgttcgaggcggctcaggagtgggccttacccgttcagttctgt
cagctccacagtctggagctcagtctggtttatcccagccactgtgccgaggacagacaa
tttgtacactttttattgtttgtccaactgcacagtttcccaccccagcaggtgaggtcc
ctggtaggtctctttgaccccatcttgcaggctcacctaagccttgcatttcaagacctg
caggttcacagtcagagaaggagccgagaccctgaggaacggctgggctttctgagaact
gacgtggcccctgggggctctgaacacggcggggagctgttccaggtgctgctgcagagc
caggagaagcaagtgtcatggaggtttgtcctacatgaggcaatagttcgacactgcccg
atgctggcagtacttgctgcctgtctgcagggaacagatctgctgtcatgtctgtgtgtg
tggatgctgacctctgttgttgacgcaacaacagaagaggccacttcacacctcgccgag
gccccccaggaccatgaatggaccctccatgacctgtcaatcatctggaagacgctgctg
tcgcagggtcacatccgggtcctcctgcgaggatttgagctttttcagcaggactgcccc
ctggtgttggttctgagaatgttcgagttgtgttgcgattacagaaaattcgctgaggcc
aagacgaagttgttggactttcagaggacacttattactctcagaaacggtggccctgcc
gctgcaggcagccttccactgcagtgggtggagagccaggcctcagcgctgctcctcacc
atgctgctgcgctgctcctcccagtacgaccttcaccagctactgcagctcctggctgat
gttgacaaacttctcaaatccaacggtccagacttaaggaaattgagccagctgagtcag
ctgctgcaaggatcaggtgtgactctgtcccagagcctgctgcagtgcattcccccctcc
gtccagcaggaggagtttcagctgatagtggatgctttgcaaactggaggacactacagc
caggccagacaggtggcagtgctggctggtctgcctgtccaccgcctcctcatgagccag
ctgcttcaggaagtaaacgtccacaagagcaagtggcggtggagacgtttggagacccga
gtggccttctggaacaagtgccacaggcgactggaagctgacagcactgacccagagtcg
gccgcgcagttctttctatctcagtcggaggctgccgccggccctgatggtgaccaggct
cagacaaatgttctggacatccaggagtgctgcttgctgctccagctcacggcccactgg
ctttccttgcaaactcctgttcctgtagatgagctacagaggctggagaaaaagctgtgg
ttctgtcaggtccagaagcacattctcacagctacagtagaggaaaagagcatgttcaag
ctgctgccaccggcaatcacgtctgaaaccaacgaatatgagacgttcatgaaggagttt
tcgttctctaacatcgcagacctgaatatggagaagtacctgagtctggagggattccca
gaaaagcctgaggagttggaggcagaatcagatttaagttctgaagagagaagagttttg
gcaatacttattgaccagttactagataagggtagtatacatgaagccagtcgtgtttgc
cgctatttcagcatgcacagtccagatgtatggttggttctgtgctgccatgctctggca
tgtggattcttggtaccggaaccacaagagcagacctcagaacccgcagaaacgaaggct
ctaacccagtccccctctctcagcagtctgtcctcatttgtgatggtgcccctccacgaa
gacaccgtcactgtccagatccagaagcgggtggagcagtgtcgccatggaagcagctac
tgcaaacaagtcctcagtctctaccagctctccaaggaactgcagtgccccttcagtcat
atcagcagagaggagcctcattctgtgttagagaagctgctgctgttggtgcaaccagat
cggttcaggatggccaagaccttcatcaaaactcagggtcttggtgctgacagtgtggct
gagttggtctccaacgctgtggttcaaggcctgctggcggcaacccaggagctgcagtct
ggagaaaggctgattttcagaccatcagaggggcaggactcactgctgcaactgatcaga
ctgtgtgaagatccaaacatagtgggcctcaaactgctggaaaaccttaacactgttcca
ctgagggacctgaactccattgtggagctgctgattgtggctcacagctgtttcagtctc
acttgcaacatggagggaattgttcgagttctccaagctgctcgtcatctcagccacacc
tacctggctccaggagagcactacagcctgctggtgcgtctgctgacgggtatcggcagg
tacaatgagatgacgtacatcttcgatttgctccatcagaaccattgttttgagatgcta
ctgagaaagaaggtggacagagacataggacagagctccagtttgaagacttctctgctg
gattacatcaaacgctgcctccctgctgacagtgagaagcacaacatggtggcgctgtgt
ttcagcatgagaagggaaattggagaaaaccatgaaatagccgccaggacacagctgaag
atgattgaatctcaggactgggttgtgactcctgatcttaagaactcattggtcaaggta
ttgggtctgctaaaggatgctgcagaaagtttctccaaggactcctgtgtgcatcgggct
ggtcgttgtgtccgtgcagccaaactgatcactcttcagctccacttgttgaaccaggga
tccaccctacgcatcatcaacctaaagcctgcagagatgcacagtgccatcatggctctg
ccacagtgttaccaggtgtttgtggtcgcagaagcgtacagctacagtccagactgggct
gagatcttgtatcagaaagtggttctgaagggacactttgtttacctggaggagctgaaa
tgccaccgtcctctcacctccgccctatttgaagacattttcagaaagctggacagtgtc
cccagcagcgtctgttccaacgcgaagcgtctgctcagtcactgtgatgatgtgtacacc
cgctacagactggcctaccagcagaatctctatgatgtcaccaaaacactgctgcaggat
aacaagacctcctgctacatgaatgacagacttgccagtaaagcatttatctga
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integrated database retrieval system
