Xiphophorus couchianus (Monterrey platyfish): 114159059
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Entry
114159059 CDS
T05908
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xco03041
]
114159059 (ddx1)
03016 Transfer RNA biogenesis [BR:
xco03016
]
114159059 (ddx1)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114159059 (ddx1)
Spliceosome [BR:
xco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
114159059 (ddx1)
Transfer RNA biogenesis [BR:
xco03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
114159059 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
114159059
NCBI-ProteinID:
XP_027896903
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All DBs
Position
15:13519098..13525320
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRAAVKTGGAIFNTWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYCYEVTCHDQGLCRVGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKGQISFSKNGNDLGSAFDIPQNLSSQGFFASCVLKNAELKF
NFGGEDFKHPPKSGFVALDQASESHTIKSSQMGSAKVAQVKASSNMPKALIIEPSKELAE
QTFNNVKQFKKYVENPKLRELLVIGGVAAKEQLAVLEQGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDECDGLLTAGYTDFISRIHKQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPESVHHVVVPVNPKADRQWERLGKNHIQTDEVHAKDNTRPGAN
TPEMWSEAIKMLKGEYTVRAVKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKGHQF
SCVCLHGDRKPNERKNNLDRFKRKDVKLLICTDVAARGIDISGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCQNRGRGCYNTRLKDEGGCTIWYNEKELLS
EIEEHLKCTITQCDTDIKVPVDEFDGKVTYGQRRALGGGNYKGHVDVLAPTVQELAVLER
EAQTSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagccttttctgaaatgggtgttatgcctgaaatcgcgcaggctgtggaggagatg
gattggctactgccaacagatatccaagcagagtccattcccttgattcttggtggagga
gatgttcttatggcagcagaaactggtagtggaaagacaggagcctttagtatcccagtc
atccagattgtctacgaaaccctgaaggatcagcaggagggcaagaagggcagagctgct
gtcaaaactgggggagcaattttcaacacctggcagatgaatccatatgatcgtagccca
gcctttgcaattggccccgatggactctgctgccagagcagggagttcaaagagtggcac
ggctgtcgctccaccaaaggtgtcacaaaagggaagtactgctatgaggtaacctgccat
gaccagggtctctgccgggtgggttggtctaccagtcaagctgctctggatttgggaacc
gacaagtatggctttggttttggtgggaccggaaagaaatccaacaacaagcaatttgac
agctatggggaggagtttaccatgcatgacactattgggtgctacctggatttagataag
gggcagatctccttctctaaaaatggaaacgacctgggatcggcttttgacatccctcaa
aatttaagcagccagggcttttttgcttcgtgcgtcctaaagaatgctgagctgaagttc
aactttggaggagaagacttcaaacatccccctaaaagtgggtttgtcgctctggatcag
gcatcagagagtcacaccattaaatcctcccaaatgggcagtgccaaagtggctcaagtg
aaggcttcatcaaacatgcccaaagccctcatcattgagccatccaaagagctggcagag
caaaccttcaacaatgtcaagcagtttaagaaatatgtggaaaatcccaagctaagggag
cttcttgtgatcgggggtgttgcagctaaagagcagttagcagttctggaacagggggta
gacatagtggtgggaacacctggaagactggatgatcttgtttccactggaaaactcaat
ctgtcccaagtccgtttcctggttctggatgagtgtgatggcctcctaacagccggatat
acagacttcatcagtaggatccataaacaaatccctcaggtgacctctgatggcaagaga
ctgcaggtcattgtgtgctccgccacactgcattccttcgacgtgaagaagctctctgaa
cgcatcatgcattttcccacttgggtggaccttaaaggtgaggactctgtcccggaatcc
gtccaccatgtggtggtgccggtcaacccaaaggccgaccgacagtgggagcgcctcggc
aagaaccacatccagactgatgaagttcatgccaaagataacacccgaccaggagccaat
acaccagaaatgtggtcagaagctatcaagatgctgaagggcgagtacacggtcagggcc
gtcaaagagcacaaaatggaccaggccataatcttctgtcgcaccaagatcgactgcgac
aacatggagcaatacttcattcagcaaggaggaggtccagacagcaaaggtcatcagttc
tcctgcgtttgccttcatggtgatcgaaagccgaatgagaggaaaaataacttggatcgc
ttcaagagaaaagatgtgaagctgctgatctgcacagatgtggccgccagaggaatcgac
atcagcggcgttccttacgtgattaatgtcaccctgcctgatgagaagcagaactatgtc
catcgtatcggcagagttggtagagcagagaggatgggacttgccatctccctagttgct
atggaaaaagaaaaggtgtggtaccatgtttgtcagaaccgagggagaggctgctacaac
acccgactgaaggatgaaggagggtgcaccatatggtacaacgagaaagagcttctgtct
gaaatcgaggagcatctgaaatgcaccatcactcagtgtgacacagatattaaagtacct
gtagatgagtttgatggaaaagtgacttatggacagcgcagagctctgggaggcggaaac
tataagggtcatgtggatgttctggccccgacagtccaggagttggccgtccttgagaga
gaagctcaaacatcttttcttcatttaggatacatgccaaaccagctgttcagggccttt
taa
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