Xiphophorus couchianus (Monterrey platyfish): 114159138
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Entry
114159138 CDS
T05908
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein-like isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114159138
03036 Chromosome and associated proteins [BR:
xco03036
]
114159138
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114159138
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Gene silencing
piRNA pathway
114159138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
114159138
NCBI-ProteinID:
XP_027897058
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All DBs
Position
2:3130861..3151323
Genome browser
AA seq
1928 aa
AA seq
DB search
MEDKKRKKEDKRKREASQKVAEQKNKVTDVTKPAAAQSPAAQSSSASPSPVPAAAPTPAT
SGTGSAAPPAPGGNNAKRLAVANGQPASNTGSSSAAGLGAAGNGGAGGGGAQANQQPSRY
MPREVPPRFRCQQDHKVLLKRGQPPLSSMLLGGGGDGPNTNMAAASDSASSLALTSPSVA
ASTNNYANSMWGASSGSQAPSQGKEKVIVDGNDLEEWPSIAGSDGGNGGLPVTSISASGG
QPSPTSSFSLPNECMQLPNSAAWGSTAPQGHLGGGAAGPLLQQPSSVSKAPAVPGCHDAS
GSLDGSSGIPGANFSPNANPSAWPALVQQDGPAAANNAASLGLGGGAAGSLGGHPSISVN
QSSAHQHQLHQMQSRDRDVGGGKWDGESAGPNISGGEGIGGGMDHGVGGSRVGAGDPSHA
PSWRGQPYPAAYSKTGASRTDGWEGGAAEGDKGTLGWGYPSAENGGQTSGASQGGWGLPV
GADRGVSSSDWGGGSNPAAEEMGNCSSNSSSSSSTAGNPPTASSSTAPAASKAWDNQKGD
GEVGEWGDGAEGQGGRGGSSSSGGNSRSGSGPNSNRIRRQAPNTETALQNLLTRSDLDPR
VLSNSGWGQTQIRQNTAWDVVEQSKASSKHPVALGGPRTLSTDSSGPGVSPSLVPSTGSS
GEGWESSSNSSSSGASLSGRGPPTACTNMRNMSQSGSVAPGVGSGLTQGKAAGWGRGDNH
EAKDWGGEEWRGNSRAEKGGGWGDVGQQEKGTEGWKDVGGNDEGSGWGSKPKVGSGKNWL
EQESKSGGGWDEERRSGTHSGGGGGGWGNWDSSPPRRSWGAGGTGGGGGGGGTGVDGVGG
MAPKPHQGWSGGNKMHQMPNSQPGSMPGPPAQPQQSQPRNQNPQLQQALDQGAMQGGGGG
RKMGAQTQNQSSGWNSGPIPAGGGSGPEPSGWEEPSPQSISRKSEIDDGTSAWGDPTHYN
YKPVNLWDKNSGAASQQPHGPGQNQQQQPGPPVQQQPNRPTVALPEPSGWGGASPASPSV
DNGTAAWGKTSDAPTGWGEAADAGGKPAGWGNAPSNPIRSGSKSMQDSWGQKESSVAASR
HSSWEDEEDGGGMWNNAGSQGSGSSWGQGSNGGWGQSNPGKKTGSKAPLKAAGDSWMSPI
NRQFSNMGILNDEPGGLNMDLAPEKKLEAEKRGMVMNDYNGEMRKGGRGPSGGVLYRPGS
KEPAPADAASYYDKTSHLANQDCCLGDEAPCSLNLPPTACKPHSLFSHSVPFRQGGHSIF
GGTGGMAQSRHQPGVPPINQSPGMRAQVPHQFLSAQVPGSMLKPMPPPSGTVGGVGGGVF
PPQLSPQHIAMLSIYPPQIQLQLACQLLLQQQQQQQQPPQPMLQNQRKFSPNVRPQTDPQ
QLARIMAVLQQQQRQHQQISGLGAGSKFSPSHHSGSGPKLPGTEPLPHPGLAGSMVDLQQ
KPFGPYSGFGSAVNLPGLDLGGSMVGSAGAMKDPAAPQSRFKWMMEGSCSPDASSPENAF
HKNVPITPIKMPGASHYSQFDLLVGDGASDSWHRTPGNKMAAKPSSAPSWPPEFQPGVPW
KGIDRVDPESDPYMTPGSMMGNAVSPGLNDSEHQLLQDNTDSTPPLNTLLPSPGAWPYSA
SDSLLNNAHNSAKYTDYKTSWPPEPIGHKSWKASRSSSQAQLARPPPGLAGQKPPSSSPW
TGGAPRLAGRGWSSGSTNTGSTWSDGNGRESCWLVLSNLTPQIDGSTLRTICMQHGPLLT
FHLGLTQGTALIRYGFKQEAAKAQSALHMCVLGNTTILAEFVSEEEVARYIAHSQAGGAG
SEGAAAAGTGSNAGDRAGAAAVGGGVEGSAPSSTAAVSSSSGWQSLDGGPSDPAGVAQAT
GLGIFTQWSSNGGGGAEASRPALWGGMGGYPGGSGGLWASPALEDRHQMGSPASLLPGDL
LGGGADSI
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaggaaaaaggaagacaaacggaaaagggaagcctctcagaaggtt
gcagagcaaaaaaacaaagtgacagacgtgaccaagccggctgctgcccagtctcccgcc
gcccagagcagctccgcctcccccagccctgtgcccgctgccgctccgaccccggccacc
tcgggcaccggcagcgccgcccccccggctccgggcggcaataatgccaagcgcctggcc
gtggccaacggacagcccgcctctaacaccggctcttcctccgccgctggcctcggcgcc
gctgggaacggcggcgcgggcggcggcggagcccaggccaatcagcagccatcacgctac
atgccgagagaagtgccgccgcgatttcgctgccagcaggaccataaagtgctactgaag
agggggcagccgccgctgtcctccatgctgctgggaggagggggggatggccccaacaca
aacatggctgctgcttcagattctgcatcttcattggctctcacctcaccatcagttgct
gcttctactaataattatgcaaattccatgtggggggcaagctcaggcagccaggccccc
tctcagggcaaggagaaggtcatcgttgacggcaacgacctggaggagtggcctagtatt
gctggcagtgatggaggaaacggcggcttgccagtgacgagcatcagtgcctctggcggc
caaccctcacccacttcctcgttctctttgcccaatgaatgtatgcagttgcctaacagt
gcggcgtgggggtcaactgccccccagggtcatcttggaggaggtgcagctgggcctctg
ctgcagcagccctcctctgtttccaaagcccctgctgtgcccgggtgccacgacgccagt
ggctccctggatggtagcagtggaattccaggtgccaacttcagtccaaatgccaaccct
tcagcctggcctgctctggtgcagcaggacggccccgccgctgccaacaacgccgcctcc
ttggggctggggggcggggcagccgggagtctggggggtcacccatctatatctgtgaat
cagtcaagcgcccatcagcaccaacttcaccaaatgcaatccagagacagagacgttgga
ggggggaagtgggacggtgaatcagcgggaccaaatatttcagggggggaagggattgga
ggaggaatggaccatggtgttggggggagcagggtaggtgcaggagacccgagccatgcc
ccctcctggagaggccaaccttaccctgcagcttactccaaaacgggtgcctcaaggact
gacggatgggagggaggggcagcagaaggggataaagggacattggggtgggggtaccct
agtgctgaaaatgggggtcaaacctccggggcatctcagggaggatgggggttaccagta
ggagcggatcgaggggtttccagtagcgactggggtggagggtcgaatcctgcagctgaa
gaaatgggaaactgcagtagcaacagcagcagcagcagcagcactgcagggaaccccccc
actgcgtcctcatccaccgcccccgctgctagcaaagcctgggacaaccagaaaggagac
ggggaagttggggaatggggcgacggcgccgaggggcaaggaggacgcggaggttcttca
tccagcggtggaaactcccgaagtggaagcgggcctaacagcaaccgcattcgtcgacag
gcgcccaacacagaaactgccttacagaacctgctcacccgatccgatctggatccgcgg
gtcctgtccaactctggctggggccagacgcagatccgccaaaacacggcctgggacgtc
gtggaacaaagcaaagcttcatcaaaacaccccgtcgctctgggaggacccagaaccctc
agcactgactcatcgggcccgggggtcagtccctcgttggttccctccaccgggtcatca
ggtgaaggctgggagagcagcagcaacagcagcagcagtggggcgtctctgtctgggaga
ggccccccaaccgcatgcaccaacatgaggaacatgtcgcaatctggatcggtggcaccc
ggtgtggggtcggggctgacccagggcaaggcggcgggttgggggagaggggataatcat
gaagccaaggactgggggggcgaggaatggaggggcaacagtcgggcagaaaagggcgga
ggatggggggacgtcggacagcaggagaaaggaacggagggctggaaggacgtagggggg
aacgacgaaggcagcggctggggatcaaaacccaaggttggatcgggtaagaattggttg
gagcaagaatcaaaatcaggtggaggttgggatgaagagaggaggagcggcacgcactca
gggggaggtggaggtggttgggggaactgggacagcagccccccccggaggagctggggg
gcaggaggcacagggggaggagggggcggaggaggcacaggggtggacggcgttggaggc
atggcgcccaaacctcaccagggttggagtggaggaaataaaatgcaccagatgccaaac
agccagccgggctccatgccaggcccgccggcacaaccgcaacaatcacagccccgcaat
cagaacccgcagctgcagcaagcgctggaccaaggggccatgcaaggcggcggcggtggg
aggaagatgggcgctcagacgcagaaccaaagctcaggctggaactccggaccaatccct
gccggaggcgggagtggaccagaaccgagcggctgggaggagccatccccgcagtccata
agcaggaagagcgagatcgacgatgggacgtcggcgtggggagacccgacccattacaac
tacaagccggttaacctgtgggacaagaacagcggtgctgctagccagcagccgcacggg
ccgggtcagaaccagcagcagcaaccgggaccgccggtccagcagcagcccaacagaccg
accgtggcgctcccagaaccttcgggctggggcggcgcgtctccagctagtccgtcggtg
gacaatggtacggcagcctgggggaaaaccagcgacgctcccactggctggggggaagcc
gccgacgccggagggaagccggcaggctggggaaacgctccttcaaacccaatcagatct
ggttcgaagtctatgcaagacagctgggggcagaaggagagttcggtggcggcgtcacgc
cactccagctgggaggacgaggaggacggaggaggcatgtggaacaacgccggctcccag
ggcagcggctcctcctggggccaggggagcaacggaggctgggggcaaagcaatccgggg
aagaagaccggcagcaaggctccgctgaaggctgcaggagattcctggatgagtcccatc
aacaggcagttttccaacatgggaattctgaacgacgagcccggcgggctgaacatggac
ctggcgccggagaagaaactggaggcggagaagagagggatggtgatgaacgactacaac
ggagagatgaggaaaggaggaagagggccgagtggaggagtgctgtaccgtcccgggtcc
aaagagccggcgccggcggatgcagcatcttactacgataagacctcacatttggccaat
caggattgttgccttggagacgaggcgccttgctctctgaacttgcctcccaccgcctgc
aagccccattccctcttcagccactctgtcccctttagacaaggcggccacagtatcttt
ggcgggactggaggaatggcccagtcacggcatcagcccggtgtcccgcccataaatcag
tccccagggatgcgagcacaagtgcctcatcagttcctgtctgcccaggtgccgggctcc
atgctgaagccgatgccgcctcccagcgggacggtggggggcgtcgggggaggcgtgttc
cccccgcagctgtccccgcagcacatcgccatgctcagcatctacccgcctcagatccag
ctgcagctggcttgtcagctcttactgcagcagcagcagcagcagcagcagccgccgcag
ccgatgctgcagaaccagaggaagttctcaccaaacgttcgtccgcagaccgaccctcag
cagctggcccgcatcatggccgtcctgcagcagcagcagaggcagcaccagcagatcagc
ggcctgggggccggctccaagttctccccgtcccaccacagcgggtcgggtcccaaactc
cccggcactgaaccgctgccccatccgggcctggccgggtccatggtggacctgcagcag
aaaccctttggaccgtactctggcttcggttctgctgtgaacctgccgggtctggacctg
ggcggctccatggtgggcagtgccggcgccatgaaggacccggcggcgccgcagtcccgc
ttcaaatggatgatggagggcagctgctctcccgacgcgtcctcaccggaaaacgctttc
cacaaaaacgtccccatcacccccatcaagatgccaggcgcctcccattactcccagttt
gacttgctggttggagacggagcgagcgacagctggcatcgcacccccggcaacaagatg
gctgccaagcccagcagcgcccccagctggccgcccgagttccagcccggcgtgccgtgg
aagggaatcgaccgcgttgacccggagtccgacccgtacatgacgccggggagcatgatg
ggaaacgcggtctcacctggcctcaacgactcggagcaccagctgctacaagacaatact
gactccaccccccccctgaacaccttgctgccttcacctggtgcctggccctatagtgcc
tcagacagccttcttaacaatgcacacaactcagcaaagtacacggactataagaccagc
tggccgccagaacccattggacacaagtcctggaaagctagccgcagcagcagccaggcc
cagctggcccggcctccgcccggcctcgctggccagaagccgccgtcgtcctccccctgg
accggaggagcgccgcggctcgctgggaggggctggagcagcggctccaccaacaccggt
tcgacctggagcgacgggaacggccgggaaagctgctggctggtgctcagtaacctcacg
ccgcagatcgacggctccaccctaagaaccatctgcatgcagcacggccccctgctgacc
tttcacctcggcctgacccagggcaccgctctgatccgctacggcttcaagcaggaggcg
gcaaaggcccagagcgcgctccacatgtgcgttctgggtaacaccaccatcttggcggag
ttcgtcagcgaggaagaggtcgctcgctatattgcacattctcaggccggaggggcaggg
agcgaaggagccgccgccgccgggaccggcagcaacgccggcgaccgggctggagccgcc
gccgtcggagggggagtagaaggctccgccccttccagcaccgccgccgtgtcttccagc
tcagggtggcagagtctggacggcggcccgtcggacccggccggcgtcgcccaggcgacc
ggcctcggaatcttcacacagtggagcagcaatggcggcggtggtgcggaggcgtcccgg
ccggcgctgtggggcgggatggggggttaccccggcggcagcggcggcctctgggcgtct
ccggcgctggaggatcgccaccagatgggaagccccgcctccctgttgccgggcgacctg
ctgggcggcggcgccgactccatctga
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