Xiphophorus couchianus (Monterrey platyfish): 114159672
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Entry
114159672 CDS
T05908
Symbol
utp18
Name
(RefSeq) U3 small nucleolar RNA-associated protein 18 homolog
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
114159672 (utp18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xco03009
]
114159672 (utp18)
Ribosome biogenesis [BR:
xco03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
114159672 (utp18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
NBCH_WD40
Beta-prop_TEP1_2nd
KNTC1_N
Beta-prop_NOL10_N
WD40_like
Pox_D5
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
114159672
NCBI-ProteinID:
XP_027897536
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Position
16:complement(505958..510107)
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AA seq
533 aa
AA seq
DB search
MEDENVIKLPVTENKITAKKRSRPPKFDPEEEEQRRQQNLKRLAVLGEEDGSVKRLETLV
FGAEEELLERLVEEDEEEQTSGLQLEDEEGGGDEDSEGEEEPRQQPQPRKAAWVDEDDEL
EEEVDLKHRYRRNLMKGDAESAMSKQRLQQRMKEQFQKSMGGTPSWAQSSDQKKKKKKAL
DEEEEEEEEEEDDLLRRTGNFVAPSESLPSGVLRMKKCLHANSARPSADRLTTVQFHPSA
QVVMTAGLDQSVSLFQVDGKTNPKIQSVHLERFPVHQARFSRDGRTVIATSLRNKMFYLY
DMMEGRVAPVRSVRGLSEARVKDFSVCPDGGALLLTGTNGYLHMLTLKTNEIVRSMKING
DVSGVAFCPDGSKAFVNSEEGEVFVWDVRSSRCLSRFMDDGCVKGTAIAASPDGRYLACG
SQAGVVNVYSQEACLNSTNPKPLRAVMNLLTSATSLTFNPTSEILAVASRVEDEAVRLVH
LPSITVFSNFPVASRKVAHRVSCLDFSPRSGFFSLANNKGHAPLFRLLHYKDF
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaaaacgttatcaagcttccggtgaccgagaataaaataacggcgaagaag
agaagccgacctccgaagttcgacccggaggaagaggagcagcggcggcagcagaacctg
aagaggctggcggttctgggagaggaggacggctcggtgaagcggctagagacgctggtg
tttggggcggaggaggagctgctggagaggctggtggaggaggacgaagaggagcagacc
agtggcctgcagctggaggatgaggagggtggtggggatgaagactcggagggggaggaa
gagcctcgtcagcagccgcagcccaggaaagctgcctgggtggacgaagacgacgagctg
gaggaagaggtggacttgaagcaccgttaccgtagaaacctgatgaagggagatgcagag
tcggccatgtccaagcagaggctgcagcagaggatgaaggagcagtttcagaagtcgatg
ggaggaactccatcctgggcgcagagcagcgaccagaagaagaagaagaaaaaagctctt
gatgaagaagaggaggaggaggaggaagaagaggacgacctcctcaggaggacggggaac
ttcgtggcgccttcagagagtcttcccagcggcgtcctgaggatgaagaagtgtctccat
gccaacagcgcccgcccctcggcagaccggctcaccacggtacagttccacccgtcggcg
caggtcgtcatgacggcgggactcgaccagtccgtctccctcttccaggtggacgggaag
acgaacccgaagatccagagtgtccacctggagcggttcccggtccaccaggcccggttc
agccgggacgggcggacggtgattgccaccagcctacggaacaagatgttctacctgtac
gacatgatggagggccgcgtggcgccggtccgctccgtcaggggtctgagtgaagccaga
gtgaaggacttctctgtgtgtcctgacgggggcgctctgctgctgaccgggaccaacgga
tacctgcacatgctcacgctgaagaccaatgagatcgtccgcagcatgaagatcaacggt
gacgtcagcggcgtggctttctgtcccgacggcagcaaagccttcgtgaactcagaggaa
ggcgaggtgtttgtgtgggacgttcgcagcagtcggtgcctcagccggttcatggatgac
ggctgcgtgaaggggacggccatcgccgcctcgccagacggtcgttacctggcctgcggc
tcccaggcgggcgtggtcaacgtctactcccaggaggcgtgtcttaattcgaccaatccg
aagcctctcagagcggtgatgaacctgctgacctccgccacgtctctgacctttaacccc
acctctgagatcctggccgtcgcctcgcgagtggaagacgaagccgtgcggctggtccac
ctgcccagcatcaccgtcttctccaatttccccgtggccagcaggaaggtcgctcaccgg
gtcagctgcctggacttctcgccacgcagcggcttcttctcattggccaacaacaaagga
cacgcccccctgttcaggctgctgcactacaaggacttctga
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