Xiphophorus couchianus (Monterrey platyfish): 114159683
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Entry
114159683 CDS
T05908
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog isoform X1
KO
K13175
THO complex subunit 6
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114159683 (thoc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114159683 (thoc6)
03041 Spliceosome [BR:
xco03041
]
114159683 (thoc6)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
114159683 (thoc6)
Spliceosome [BR:
xco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114159683 (thoc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_SCAP
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_NUP159_NUP214
Beta-prop_IP5PC_F
Beta-prop_HPS5
Beta-prop_TEP1_C
WD40_like
Beta-prop_DCAF4
WDR54
WD40_RFWD3
Beta-prop_NOL10_N
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
114159683
NCBI-ProteinID:
XP_027897554
LinkDB
All DBs
Position
16:complement(548188..551648)
Genome browser
AA seq
323 aa
AA seq
DB search
MGPVELLHMSVFSQSFSPCGRFLAAGNNYGEIALFSLSAALSPDATTANQKPVLTFTAHE
GPVFSLLSTDSVLLSAGNGEVSAWNWTELIKKNVKPLWTKRPNYKSSLEIPEINSMAINP
RDDSLAIGAGDNNVHILDLEHGAFKATLQGHTDYVHCVCVREREAELLSGSEDGAVRMWD
CRTGQSVHCIEVHKYESCARPQHGKWISCLTTDSDWMLCGGGPSLSLWHLRSLSPTSVFP
LSGCQRRAAFHQDMILAVGDGAFVSHCLLGGEVKGQIPCTPPSLNTLQLNTKSSEHRVLT
VGGGSSKIDVFTNLSYRAFSLSF
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgggacccgtagagctcctccacatgtcggttttctcccaaagcttttctccctgcggc
cgcttcctggcggctgggaacaactacggagagatcgccctgttcagcctgtctgcggct
ctcagtccagacgccacgacggccaatcagaagcctgttctgacgttcacagctcatgaa
ggtcccgtcttcagtctgctctccaccgactccgtcctgctgagcgcagggaacggcgag
gtcagcgcctggaactggaccgaactcatcaagaagaatgtgaagccgctgtggacgaag
aggccgaactacaagtccagtctggagattccagagatcaactccatggccatcaaccct
cgagacgacagcctggcgatcggagcgggggacaacaacgtccacatcctggacctggag
catggcgccttcaaggcgaccctgcagggtcacacagactacgtgcactgcgtgtgcgta
cgtgagcgggaggcggagcttctgtctggcagcgaggacggcgctgtgcggatgtgggac
tgcaggacggggcagagcgttcactgcatcgaggtccataagtacgagagctgcgccagg
cctcagcacgggaagtggatcagctgcctgaccacggactctgattggatgctgtgtggc
ggcggcccgtctctgtccctgtggcatctgcgctcgctgtcgccgacctctgtgttcccg
ctgagcggctgccagcgccgggccgcattccaccaggacatgatcctagctgtgggcgac
ggtgccttcgtctcccactgccttctgggaggagaggtcaaaggtcagatcccgtgcaca
ccaccaagcctcaacacgctgcagctgaacacaaagagctccgagcaccgggtgctgacg
gtcggtggcggcagcagcaagattgacgtcttcaccaacctgtcctacagagccttctcc
ctcagcttctga
DBGET
integrated database retrieval system
