Xiphophorus couchianus (Monterrey platyfish): 114159735
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Entry
114159735 CDS
T05908
Symbol
dhx58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
114159735 (dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
xco04054
]
114159735 (dhx58)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114159735 (dhx58)
Pattern recognition receptors [BR:
xco04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
114159735 (dhx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_19
AAA_22
Feld-I_B
BTRD1
NNH1
Motif
Other DBs
NCBI-GeneID:
114159735
NCBI-ProteinID:
XP_027897625
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All DBs
Position
16:complement(6826267..6830498)
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AA seq
681 aa
AA seq
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MAEFKLRSYQKEVVERALKGENVIIWLPTGGGKTRAAVYVARRHLETTANAKVMVLVNKV
HLVDQHYTKEFKPYLGNGYRLMKVSGDSQEKDFFGIVVQDNDVIICTAQILYNALINKEE
AKHVELSDITLLIIDECHHTHKESVYNKIMRCYVEKKLKGQRQIPQILGLTASPGTGGAR
VLEDAVNHVLEICANLDSVIVSTKNYTPELEEKVPRPQKTFDIVEKRAADPFGDHIKWMM
QQIHGFMNLPSDVRLRECGTQEYEADVVILEQRGVREDNRLLAQCALHLRQYNDALLIND
TLRMMDAYRSLEEFYNTKVTTAIDGTDYFLVGLFQENQVELKNFATDSRFENPKMAKLES
TLLGQFGPDVQSRGILFSRTRRSTHCLLDWVQKKRTLQKAGIKAAILTGAGNGITYMTQN
EQADTIRNFRNGTLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARARDSQ
YSVVAQEGGREIRRERINEYLEELTGKAIARVQSMSEHEFRRKTNEIQTQTIIMNKVLQD
RKTEKKNRHAASSIRILCRNCFAQVASGSDFKLLENAHYINVNSDFKNHYKLGGEVVLEK
RFEDWEPGCTVSCNNGNCNKDWGFEMKYKKVAILPNLAIKNFALETPEGRVTVKKWKDVP
FMVEEFTFEQYCNDHFPDLFD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtttaaactacgttcctaccagaaggaagtggttgaaagggcactgaaggga
gaaaatgttatcatttggcttccaactggaggtggaaagacccgagctgctgtctatgta
gccagaaggcatttggagaccacagcaaatgctaaagtgatggtgctggtcaacaaggtt
catcttgtggaccaacattacaccaaagagtttaagccttatctgggtaatggttataga
ctcatgaaagtcagtggtgacagccaggagaaggatttcttcgggatagtggtgcaggac
aatgacgtgatcatctgcacagcccagatcctgtataatgctttgatcaacaaggaggag
gcaaaacacgttgagctctcagatatcactctactgataatcgacgagtgccatcacacc
cacaaggagtcagtctacaacaaaataatgagatgctacgtggagaaaaagctgaaagga
caacgacagataccacagatcctgggtctcactgcctcacctgggacaggaggtgcaagg
gtcctggaagatgctgtgaatcatgtgctggagatctgtgccaacttagactcagttatt
gtctcaactaaaaactacactcctgagctggaggagaaggtgccccggccccaaaagacc
tttgacattgtggagaagagagcagcagacccatttggagaccatatcaagtggatgatg
cagcagattcacggattcatgaaccttccttctgacgtgaggcttagagagtgtggcaca
caagaatatgaggcagatgttgtgattctggagcaacgaggagttagagaggacaacagg
ctcttggcacaatgcgcactccatctgagacagtataatgatgctctactcattaatgac
acgctgcgaatgatggatgcatatcgctctttggaggaattctacaacacaaaagtcact
acggccattgatgggacagattacttcctggtgggactttttcaagagaatcaggtggag
ctgaagaattttgctacagattcccgctttgagaacccaaaaatggcaaaacttgagagc
actctccttggccagttcggtccagatgtccagtctcggggcattctcttttccagaact
cgcaggagcacccactgcctcctcgactgggtccagaagaaaaggacattgcagaaagcc
gggataaaggctgccatccttacaggggctggtaatggcatcacttatatgacacagaat
gagcaggcagacacaatccgcaacttccgaaatggtacactgaacctcctgatctccacc
agtgtggctgaggaaggcctcgacatccctgaatgcaacctagtggtacgatatggactc
cttacgaatgagattgcacagcagcaggccagtggacgtgcccgagcaagggacagccag
tattcagtggtcgcccaagaaggcggacgggagatccgccgagaacgcatcaacgaatac
ttggaagagctgactggaaaagccatcgctagggtccagagtatgagtgagcatgagttc
cgcagaaagaccaatgaaattcaaacacagaccattattatgaataaagttttacaagat
cgtaaaacggagaagaagaaccgacatgctgcttctagcatcaggatcttgtgcagaaac
tgttttgcacaagtggcatctgggagtgactttaaacttcttgaaaatgcacactatatc
aatgtaaattctgactttaaaaatcactacaaactgggtggagaggtggtgctagagaaa
cgttttgaggactgggagcctggatgcacagtcagctgtaataatggcaactgcaacaag
gattggggatttgaaatgaaatacaagaaggtagccatacttccaaatcttgccatcaag
aactttgccttggagacacctgaaggaagggtcacagttaaaaagtggaaggatgttcct
tttatggtcgaggagtttacatttgaacagtactgcaatgaccacttcccagacttgttt
gattaa
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