Xiphophorus couchianus (Monterrey platyfish): 114159827
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Entry
114159827 CDS
T05908
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114159827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xco03041
]
114159827
03009 Ribosome biogenesis [BR:
xco03009
]
114159827
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114159827
Spliceosome [BR:
xco03041
]
Complex A
U1 snRNP components
U1 related factors
114159827
Complex B
114159827
Ribosome biogenesis [BR:
xco03009
]
Eukaryotic type
Pre-60S particles
Helicases
114159827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
114159827
NCBI-ProteinID:
XP_027897818
LinkDB
All DBs
Position
16:complement(19989577..19995090)
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AA seq
628 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGGPPRFGGSRSGGGGKFGNPGERLRKKHWNLDELPKFEKNFY
QQHPDVACRSLQEAEQYRRSKVITVKGRDCPNPITQFHEASFPSYVMEVINKQNWTEPTP
IQAQGWPLALSGMDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGKASRLKSTCIYGGAPKGPQLRDLERGVEICIATPGRLIDFLEAGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQ
INIGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQAGDLVSVLREANQAINPKLLQMAEERG
GRSRGGRGGDYDRRDRYSSGRRDYGGGRDRDNNRGYNNGPNQSYGVGSQNGGYGGSNGAS
NGYGGGNYNTNGQSNFATNQAGAFAAQNNFQAQQFVPNKPVVQNGASHPQYQFPQAQVPP
QHPPQQLAPQQHPPPPLVPYPMPPQFSQ
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagaccgcggcagagatagagacagaggctatggcggtgga
ccaccccgattcggtggtagccggagtggaggtggaggaaagttcggcaatccaggtgag
cggttgaggaagaaacactggaacctggatgagctcccaaagtttgagaaaaacttctat
cagcagcatcctgatgtcgcctgtagatcactgcaagaagctgagcaatacagaaggtcc
aaagttattacagtgaaggggagggactgcccaaatcccataactcagtttcatgaagca
agctttccctcttatgtgatggaggtcatcaacaaacagaactggactgaaccaacacct
atccaggcccagggttggcctttggctctcagtggcatggacatggttggcattgcacag
actggctctggcaagacactttcttatcttctgcctgcaatcgtgcacattaatcaccag
cctttcttggaacgtggggacggtccaatttgtctggtgttggcccccacccgtgagctg
gctcagcaggtgcaacaggtggctgctgaatatggcaaagcttctcgtctgaagtccacc
tgcatctatggaggcgcaccaaaagggcctcagctccgtgatttggaaagaggtgtggag
atttgcatcgccactccaggcaggctcattgacttccttgaagcaggaaaaacgaacctt
cgcagatgcacttacctggtgctggatgaggcagacagaatgctggacatggggtttgag
ccgcagatcaggaagattgttgaccaaattaggcctgacaggcagactctgatgtggagt
gctacttggcctaaagaggttcgccaactggcagaagactttctgaaggagtatgttcag
atcaacattggtgcactgcagcttagtgctaaccataacatcctgcagattgtggatgtc
tgcaatgatggagaaaaagagaataagctaatccgtctgcttgaggaaatcatgagtgag
aaggagaacaagaccatcatttttgttgagacaaaaaggcggtgtgatgacctcactcga
cgaatgagaagagatgggtggccagctatgggaatccatggtgacaaaagccagcaggag
agggactgggtccttaacgagttcaaatttggcaaagcccccatactgatcgccactgat
gttgcgtccagaggcctagatgtggaagacgtgaaatttgtcatcaactatgactaccct
aacaactctgaggactatatccaccgcattggcagaacggctcgtagccaaaagacgggc
acagcctataccttcttcactcccaacaacatgaggcaggccggggacctcgtctctgtt
ctgcgcgaggccaaccaggcaattaacccaaagctcctccagatggcagaagaaagagga
ggtcgttcaaggggcggcagaggtggtgactatgaccgtcgggataggtattcctctgga
aggcgtgattatggcggcggtagggatagagacaacaatagaggatataacaacggacca
aaccagagttatggcgtaggttctcagaacggaggctatggaggcagcaacggtgccagc
aatggatatggtggagggaactacaacaccaatggacagtcaaactttgccaccaatcaa
gcgggagcttttgctgcccaaaacaacttccaggcccaacagtttgttcccaataagcca
gttgtacaaaatggcgcaagccatcctcagtaccagttccctcaggcccaggtgcctcct
cagcatccaccacaacaacttgcccctcaacagcatcctccaccgcctctggtgccgtac
cccatgcctccacagttctctcagtaa
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