Xiphophorus couchianus (Monterrey platyfish): 114159838
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Entry
114159838 CDS
T05908
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
xco01001
]
114159838 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
xco04054
]
114159838 (ciita)
Enzymes [BR:
xco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
114159838 (ciita)
Protein kinases [BR:
xco01001
]
Serine/threonine kinases: Other
TAF1 family
114159838 (ciita)
Pattern recognition receptors [BR:
xco04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
114159838 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
LRR_8
nSTAND3
AAA_16
AAA_22
RsgA_GTPase
AAA_30
Motif
Other DBs
NCBI-GeneID:
114159838
NCBI-ProteinID:
XP_027897836
LinkDB
All DBs
Position
16:17243852..17265910
Genome browser
AA seq
1657 aa
AA seq
DB search
MAQFAEVLNQVRSVLTVALPGEVHALLEGLVEEGIISEAYRNSLNLHWLNDGIVPKFASK
PGCVELDEDLNSLGSVAQLDLNQEPTSQVRTGGSKSLTSDHNVEQTESVSLIEEPNNTRF
NLEKNKWLQHENLQRNQEEMQELLEEVLMDLSYLNQDPLSSLSVYDCTLRPSDEKAELLS
AASSEPPSDNESINKGNEESQEAWLQQVEESARRIAVPLWQNWDRGRGMLQTLLPCVPSG
CSISDRMMLEGEAQSVVLDMEEEMELAAACSTLDTCVGDFECEELSFACDTDAGRSEREA
LHFSTLNGVAVFNTDDFRILAAARSASPVEACKATEGGYITQMLEGQFDVLCPVGKMADK
VDDLFCFTADAPYQQCGTQSGLSETTFRDLLHSDVPEDSRTVLQDTSLNSLTEILTDYLE
DADMYNVDQDREFQEKTDLHCDAKMQEYDQDSSGLLDLVSGYISDLLWDDDYLASQLDPN
VLFSHDLGPDCVDDIIQKSDTAVALEVSDGANHSEQREQRKPTGKIKPERKRQRDALSTQ
CTDGNSRDSRVKRRKATEPPKTQEETAEPPAIHDAEAASVPAEPVGCLPTTPPGNLLVFP
PQSANSIPIQFITIPDPSAYKVVQLSSSPPPLIRLPLPNTAATPTYIFVPNPSPTRKRQV
PPLSPADGAVAPFLMSSFQPGSMSDTASKVTSPTAAPPSPTNEVSPCKESPKSPVVVEIP
QAVRDYIQQSKIHMSQTCQYMEAGLSLNAHYVNVSVSRREIARSGKNTNRCLDKELIITG
DIDRQKSSMGQSQIFDSLNGKRYNVLFGNAGMGKTTVIKKLCLDWSRDCIPQFDFVFLLD
GKQLALTEPVHSLQTLLLSQSSFAPHCADPEGVYAQILAAPKRVLIVFDGFDELRHYEIL
LQTQKKELVASLQKDSKAQAFTVKQLFSSILQRVLLPGCTLLLATRPRGTASQLLRRADS
FLEVCGFTPANVETYVSQYFSDPELRESALDSLKSSSYLNLLCWNPGLCHLVCTALEQCK
SEDALPRTLTALCHKVLCLKMEKDRGSTESLLEAEKINTAGPVENTDISNNSPGRRAQKN
NRTRPRAVACAASGNQRARKTKGQKQLDEENVCQDTNRTELLSQLCSIAWEGVKSNSSAV
PKGRTVSTKLRAFSLRTGLLLSQSLMKRTPSRREEMEGGGEVNNGIEEVEDKENKEKGGN
PQTSDEWEDRILLWANPFLQSYMAAVHLSLSRTVTDHSFLQTLPFQMGAKGRRKPQREEL
ELTQRIAAGLLFHNRTELQSLHSYSEAVFRDMVASKQALVMKHLEGLCFGDLNSTQILEA
CNYVYEASFTHQESGKDTSAKMLTRLALNLPELLTFRGVPLNPPDVFTVQNALRMGGAEG
RSFCLDLEDTGIQICGLRSLVALNNINTYRACIADVVTLWEELEKRSDEGLLQGAVSKFK
IHPLKATQVCHMEHLERLVSIHTSKRLSDSSDQSNSLLAEGVPAVKELYKLEFELGLENS
PLALPKLWDLLPGLHNLQHLDMENSKIGDKGAEKLANALVSLRSLEVLNLSENCIGDQGV
KKLALALKDLPKLHCLSLYSNVISDEGAESLAAVLPHMASLTDLDIKYNKMTDIGAQSLG
ASLRKCSKVKTLRMWNQCIPYGVFERLKQQDSRILWQ
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atggctcagttcgccgaggtcctgaaccaggtgaggtcggttcttaccgtggccctgccc
ggcgaggttcacgctctgctggagggtctggtggaagaggggatcatctcggaggcatac
aggaacagtttgaatctgcactggctcaatgatgggattgtgcctaaattcgcaagtaaa
ccaggatgcgttgagctggatgaggacttaaattctctaggatccgtggctcagttggac
ctcaaccaagaaccgacgagccaagtgaggacaggcggatcgaaatctcttactagtgac
cacaatgtggaacaaacggaatcggtctcattaatagaggaaccaaacaacacaagattt
aacctggaaaaaaacaagtggctccaacatgaaaatcttcagagaaatcaggaggaaatg
caggaattattggaagaagttctaatggacttgtcctacttgaatcaagaccctctttcc
tcactgtctgtgtatgactgcactctcagacccagtgatgaaaaagcagaactgctgagt
gctgcaagcagcgagcctcctagtgataacgaaagcataaacaaggggaatgaggaaagt
caggaggcgtggttacagcaggtagaggaatcagcaaggaggatagctgttcctctatgg
cagaactgggaccgagggcgagggatgttgcagaccttgctgccctgtgtgccaagcggc
tgttcaataagcgacaggatgatgctagagggtgaagcccagagtgtcgttttggacatg
gaggaggaaatggagcttgcagccgcttgcagtacgcttgacacctgcgttggcgacttt
gagtgcgaagagctaagctttgcgtgtgacacagatgcaggcaggtcagaacgagaagcg
ctccacttctctaccctcaacggagttgctgtgttcaacacggacgatttcaggatcctt
gcagcagcgagaagtgcctcacctgttgaagcctgcaaagcaacagaggggggatacatc
acccaaatgctggagggccaattcgatgttctgtgtccagtcggcaagatggcagacaaa
gtggatgacctgttctgttttacggcagacgcaccatatcaacaatgtggaacacagtca
ggactgtctgaaaccactttcagggacctgctccattcagatgtgccggaagacagcaga
actgttctgcaagatacctctcttaatagtctcacagaaatattaacagattatctagaa
gatgcagacatgtataatgtagaccaagatagggaattccaagaaaagacggatttacat
tgtgatgccaagatgcaagaatacgaccaggactcctcgggcctgttggatttagtttca
ggttatatatcggaccttttgtgggacgatgactatttagcttctcagctggatccaaat
gtgctcttcagtcatgatctggggcctgactgcgttgatgacatcatccaaaagagtgac
actgctgtggcactggaggtctctgatggcgctaaccacagcgagcagagagagcagcgg
aagccaacgggcaaaataaaacctgagagaaaaagacagagagatgccctgtctacacag
tgcacagatggaaactccagagactccagagtgaaaaggcgaaaagcaacagaaccacca
aaaacccaagaggaaactgctgagccacctgccattcatgatgctgaagcagcgtcagtt
ccagcagagcctgtgggatgccttcccaccactcctccaggcaacctcctcgtgttccca
cctcagtcagctaattccattcccattcagttcatcacaatcccagacccctctgcttat
aaggtggtccagctttcctcctcccctcctccgcttattcggctcccactcccgaacaca
gctgctacgccgacgtacatcttcgttcctaatccctctccgacccgcaaacgccaggtt
ccaccgctctctccagcggacggtgcagtggcgccctttctgatgagttcatttcagcca
ggttccatgtcggacacagccagcaaagtcacgtcccccaccgcagctcctccgtccccc
acaaacgaggtatccccatgtaaggagtcgccaaagtcccctgtggttgtggaaatcccc
caggctgtgagggactacatccagcagtcaaaaatacacatgagtcagacttgccagtat
atggaggcaggcctgagtctgaacgcccattacgtgaacgtgagtgtgagccggagagag
atcgctcgctctgggaaaaacacgaatagatgtctggacaaggagctcatcataactgga
gatatagaccgtcaaaagagctccatggggcagagtcagatctttgacagcctgaatggg
aaacgctacaacgtgctgtttggcaatgctggcatggggaaaacaactgtgatcaagaag
ctgtgtctcgactggtccagagactgcatccctcagtttgactttgtctttctattagac
ggcaaacagctcgctttaacagagcctgtccacagcctccagacgctgctgctcagtcag
tcctccttcgctccacactgcgcggatcctgaaggagtttacgctcagatcctcgcagct
cctaaaagggtgcttattgtttttgatggatttgatgagctgcggcactacgaaattctg
ctccagactcagaagaaggagttggtggcctcactgcaaaaagacagcaaagcccaggcc
ttcacagtgaagcagctgttctccagcattcttcagagggtcctgcttccaggctgcacg
ctcctcctcgccacccgcccaagaggcacggcaagccagttgctccgccgcgcggacagc
tttctggaagtctgcggcttcactccggcgaacgtggagacgtacgtttcccagtacttc
tccgatcctgaacttagggaatctgctttggactccttaaaaagcagcagctacctgaat
ctcctctgctggaacccgggtctctgccacttggtgtgcacagcgttagaacagtgtaaa
agtgaggatgccttaccaagaactttaactgcactctgccataaggtcctctgcttgaaa
atggaaaaagacagaggaagcacagagtcacttcttgaggctgagaaaataaacacggct
ggacccgtggaaaatacagacatttctaacaattctccagggagaagagcacagaaaaat
aatcgcacaaggcccagagcggtagcgtgcgctgcttctggtaaccaaagagcaaggaag
acgaagggacagaagcaactggatgaggagaatgtttgccaggacaccaacagaacagag
ttgctgtcccagctttgctctatagcctgggagggggtgaaatccaactcatctgctgtt
cccaaaggacgaactgtctccaccaaactcagagccttcagcttgaggacgggcctgcta
ctttctcagtccctcatgaaaaggacaccttccagaagagaggagatggagggaggagga
gaagttaacaatgggatagaagaagtggaggacaaagagaacaaagaaaagggagggaac
ccacaaacgtctgatgaatgggaagataggatcctgttgtgggctaaccctttccttcag
agttacatggctgctgtccatttgtctttgtcaaggactgtgacagaccactcctttctc
cagaccctgcctttccagatgggtgccaaaggccgacggaaacctcagcgggaggagctg
gagctgacgcagaggatcgctgcaggcctcctgttccacaacaggacagagctacagagt
cttcattcatactcggaagcagtcttcagagacatggttgccagtaagcaggctttggtg
atgaaacacctagaaggtctgtgctttggggatttgaattcaactcagatcctggaggcg
tgcaactacgtctacgaagcaagtttcacgcaccaagagagtgggaaggacaccagtgcc
aaaatgctgacccgattggcattaaatctccctgaactcctaacattccggggcgttccc
ctcaacccgccggatgtgttcacagtacaaaacgctctcaggatgggtggagctgagggc
aggagtttctgtttggatctggaagacactgggatacagatctgtggacttagatcgcta
gtggccctcaacaacatcaatacctacagggcctgcatagcagacgtcgtcaccctgtgg
gaggagctggagaagaggagcgacgaaggtctcctgcaaggagcggtgtccaagttcaag
atccatcctctgaaagccactcaggtctgtcacatggagcacctggaaaggctcgtcagc
atacacaccagcaagaggctctcggacagctcagaccaatcaaattccctcctggcagaa
ggggtgccagcagtcaaagaactgtacaagctggaatttgagcttggcctagaaaacagc
cccttggctcttcccaaactgtgggaccttctccctgggctccataacctgcagcacttg
gacatggaaaacagtaagatcggagacaaaggagcagagaaactggcaaatgcattagtc
tctcttcgctcactggaagtactaaatttgtccgagaactgcataggtgaccagggtgtg
aagaagctagctctcgccttgaaggacctgcccaaactgcactgtttaagtctgtacagt
aacgtgatttctgacgaaggggcagagagtttagcagctgtcctcccacacatggcttcg
cttacagacctcgacattaaatataacaagatgacggatattggagcacaaagcttggga
gccagtttgagaaagtgctctaaagttaagactttgaggatgtggaaccagtgtatccca
tatggagtttttgagagactgaagcagcaggacagccgcatcctctggcaataa
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integrated database retrieval system
