Xiphophorus couchianus (Monterrey platyfish): 114159996
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Entry
114159996 CDS
T05908
Symbol
lamb1
Name
(RefSeq) laminin subunit beta-1
KO
K05636
laminin, beta 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114159996 (lamb1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114159996 (lamb1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
114159996
NCBI-ProteinID:
XP_027898131
LinkDB
All DBs
Position
2:complement(24059772..24086050)
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AA seq
1797 aa
AA seq
DB search
MLQLRLAVLLALQALTCTQEGRGSLGGTPDDLSLPEFGDVCTEGSCYPATGDLLIGRAHQ
LLSTSTCGLKRPEPFCIVSHLQEEKKCFVCDSAAPYDDELANHNHSHRIENVVTTFGPNR
LKTWWQSENGVENVTVQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADYGKTWQVYRYFA
YDCESSFPSVSHGPMKKVDDVICDSRYSDIEPSTEGEVIYRVLDPAFRIEDPYSPRIQNL
LKITNLRVKFTKLHTLGDNLLDSRMEIKEKYYYAIYDMVVRGNCFCYGHASECAPVEGTG
QTMEGMVHGHCMCNHNTKGLNCEQCEGFYHDLPWRPAEGRNTNACKQCNCNQHSDSCHFD
MAVFMASGNVSGGVCNDCRHNTTGHNCEQCRPFYYQHPEKDLRDPNICQPCNCDPVGSLN
GGICDGLTDVRVGLIAGQCRCKVNVEGERCEHCKPAYYGLSDEPEGCKACTCSPLGTSPG
GNPCDSETGSCFCKRLVIGRDCDQCVDEHWGLSNDMDGCRPCDCDLGGAVHNRCDQVSGQ
CVCRDHMFGRRCDQVESGFYFVALDHYTYEAEDAKFGPGVTMVPRPHPHDRSPTWTGVGL
VNVPEGAFLDFSVDNIPHSMEYDILIRYEPQLPDQWEEVLMIVMRPGPITADSRCVNTVP
DDDNQMISLHPSSRYVVLPRAVCFESGLNYTIRLSLPLYSALSEVHSPYTLIDSIVLMPH
CKNLEIFTSSVGGDSSAWETFQRYRCLENSQSVIKTPMTDICRNFIFSISALLQQGAKEC
QCDPQGSLSTVCDPSGGQCQCRPNVAGRNCDRCAPATFQFGPSGCKECACDPQGSQSPIC
DQLSGQCVCVAGAYGRQCDRCLPGHWGFPACRPCSCNGHTESCDAATGRCTACRDHTTGH
SCDRCLDGYYGDPVLGSGDHCRPCLCPDGPNSLRQFAGSCYRSDTSEQVVCVCNPGFKGA
RCDQCSPGYYGNPEQAGGQCLPCQCNNNIDMLDPESCDARSGECLRCLYHSEGPSCQNCK
LGYYGNALVQDCRKCVCNQLGSDESSCQSSTDCHCDRSSGQCHCRPNAIGQHCDRCAPDT
WNMASGAGCQSCDCNPEHSYGTTCNEISGQCSCQPGFGGKTCNECRELFWGDPEVQCHAC
DCDPRGTLEPQCNKVSGHCVCVEGVAGSRCNACARGFHGTFPDCHRCHQCFSEWDNVIGQ
LTNQTHRLVNKVSSIKASGISGPYRKSIESMERSASDIQSILDQDPASQPLTEVQNLLQQ
ASDLMAALSQTMNNTEETLDLVAEQDSGIKTQLDSVTSDAQKLERTVQELLDQVEFIKNS
NIRGATDSVTKYFLQSQAAEARANASTINAGNPVESSAALRQLTEDKMNQTREEFLERQS
EHAQKLDNLAGEMETLDLSVISYKTCGSPSSGQDSCWSSPCGGLGCVDPEGQPKCGGEGC
DGAVTAANSILLKTQEAEQEIISAMAEVEKLSKMVLEVKMQADEAKLSAQNVLMKTNRTK
HKVDQSNDELRSLIRQIKDFLTQDAADLESIELVANEVLAMQMPTTPAQLQNLTDEIRHK
VGELGHVEAILQQSADDIQRAETLLDQARQASKQATDTKDSAEKVKQALEEAQRAHTAAS
SAIQQAASDIQTTAKLLSSVETETADAESKLDNATQRLQRLEQDVKLLADRSANVTQRTK
LANQEAADIGRIAEEVKKEFESEVKQKYSTVEQLIDQKAGGVADAKKRAESLQNQAKQLL
LQASDKLQLLKDLEKSYDDNQRTLELKAEQLVEMEAAVKKLLQEISHKVTLYSTCFF
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atgttgcagttgcggctcgcggtgctgctcgctctgcaggcactcacctgcactcaggag
ggcagaggctcgctgggtgggaccccagatgacctcagcctcccagagtttggcgacgtt
tgcactgaaggcagctgttacccagcgacaggcgatcttctgattggccgagctcaccag
ctgctgtccacctctacctgtggactgaagcgtccagaaccgttctgcattgtcagccac
ttgcaggaggagaagaagtgctttgtgtgtgactcagcagcaccatatgacgatgagctg
gccaatcacaaccacagccaccgaattgaaaacgtcgtcaccacatttggtcccaacagg
ctgaagacctggtggcagtccgagaacggtgtggagaatgtcaccgtccagctgaacctt
gaagccgagtttcacttcactcatctcattatgaccttcaagacgtttcgaccagctgcc
atggtcattgagcgatcagcagactatggaaaaacctggcaggtttaccgctactttgcc
tacgattgcgagtcatcctttccatcagtttcccatggtccgatgaagaaggttgatgat
gtcatctgtgactctcgttactctgacatcgagccatccactgaaggcgaggtgatttac
agagtcctggacccagcatttcgtattgaagacccttacagtccacggatccagaacttg
ttgaagatcaccaacctgcgggttaagttcaccaagctgcacacactcggagacaacctg
ctggactctcggatggagatcaaggagaaatattactatgccatctatgacatggtggtc
agaggaaactgcttctgttatggacatgcgtctgaatgcgcccctgttgagggaacaggc
cagaccatggaaggcatggttcatggtcactgtatgtgcaaccacaacactaaaggactg
aactgtgaacagtgcgaaggattttaccacgatctgccctggagaccagccgaggggcgc
aacaccaatgcctgcaaacagtgtaactgtaaccagcactcggactcatgccacttcgac
atggccgtgttcatggcttctggaaacgtcagcggaggagtttgcaacgactgtcggcac
aacacgaccggacacaactgtgagcagtgcagaccgttttattaccaacatccggagaag
gacctcagagacccaaacatctgccagccctgtaactgcgaccccgtgggctccctgaat
ggaggaatatgcgacggattgacggatgtccgagtcggtctgatcgctggtcagtgccgg
tgtaaagtcaatgtggagggggaacggtgcgaacactgcaaaccagcgtactacgggctc
agcgatgaacctgaaggctgcaaagcgtgtacctgcagtcccctgggaacatctcctgga
ggaaacccgtgtgacagcgaaacaggaagctgtttctgcaaacgtctggtgatcgggcgg
gactgcgaccagtgtgtggatgaacactggggactcagtaacgacatggacggctgcaga
ccgtgcgactgcgatctgggaggagccgtccacaaccggtgtgatcaggtgagcggtcag
tgtgtctgcagggatcacatgttcggccgtcgctgcgatcaggtggagtccgggttctac
tttgttgctctggatcactacacctacgaggctgaagatgccaagtttggacctggagtg
acgatggtgcccagaccccaccctcatgaccgcagtcccacctggacaggcgttggcctg
gtcaatgttcctgaaggggccttcctggatttctctgtggacaacatccctcattccatg
gagtacgacattcttatccgctacgagcctcagctgcctgaccaatgggaggaggttctg
atgatagtaatgaggcctggaccaattacagctgacagccgctgcgtcaacacggtgcca
gacgacgacaaccaaatgatctcccttcatcccagctcgcggtacgtggttctgccgagg
gcggtttgttttgaatctgggctgaactacacgatccgcctcagtctcccgctctactcg
gccctcagtgaagtccattctccgtacacgctgatcgactcgatcgtgttgatgccgcac
tgtaagaacctggaaatattcacctcctctgtgggaggggactcgagtgcttgggaaacg
tttcagcgttatcgatgtttggagaacagccagagtgtcattaaaaccccgatgactgac
atctgcaggaacttcatcttcagcatctctgccctgttgcagcagggagctaaagagtgc
cagtgtgacccccagggctccctcagcacagtgtgtgaccccagcgggggccagtgtcag
tgtcgacccaacgtggcgggcaggaactgtgacagatgcgctccggccacttttcagttt
ggaccgagcggctgcaaagagtgtgcatgcgaccctcaggggtcccagagtccaatctgc
gatcagctgagtggtcagtgcgtctgtgtcgccggcgcctacggtcggcagtgcgaccgc
tgcctgccgggtcactggggcttcccggcctgccgcccctgctcctgtaacggacacacg
gagagctgcgacgccgccaccggccgctgcaccgcctgcagggatcacaccaccggacac
agctgcgacaggtgtctggatggttactatggcgacccggttctgggctcaggtgaccac
tgtcgcccatgtttgtgtcccgacgggccgaacagtttgcggcagtttgcgggaagttgt
taccgcagcgacacctcggagcaggttgtgtgtgtttgcaacccaggattcaaaggtgct
cgctgtgatcagtgttcacctggttactatggaaaccctgaacaggccggtggccagtgt
ctcccgtgccagtgcaacaacaacatcgacatgctggacccggagtcctgtgacgccaga
tccggcgagtgcctgcgctgtctgtaccacagcgagggtccgtcctgccagaactgcaaa
ctgggttactacggcaacgccttggttcaggactgcaggaaatgtgtctgtaatcagctg
ggcagcgacgagtccagctgccagtcctccaccgactgccactgcgaccgcagcagcggc
cagtgccattgcagacccaacgcgattggtcaacactgtgaccgctgtgcgcccgacacc
tggaacatggccagcggcgccggctgtcagagctgcgactgcaaccctgagcattcgtac
gggacgacctgtaacgagatcagcggtcagtgctcctgccaacctggctttggaggaaaa
acttgtaacgagtgccgagagctgttctggggagaccctgaagtccagtgtcatgcatgc
gactgcgaccctcgcggcaccttggagccacagtgcaacaaagtgagcggccactgcgtc
tgcgtggagggcgtggccgggtctcgctgcaacgcctgcgcccgcggcttccacgggacc
ttcccagactgccatcggtgccaccagtgtttctcagagtgggacaacgtcattggtcag
ctgaccaatcagacacaccgactggtcaacaaggtcagctccattaaagccagtggaatc
agcggaccgtacaggaagtccatagagagcatggagagaagtgcctcagacatccagagc
atcttagatcaagatccggcctcgcagcctctgactgaggtccaaaacttgctgcaacag
gccagcgacctgatggcagctttgagccagaccatgaacaacaccgaggagactctggat
ctggtggctgagcaggactctggcattaaaacccaactggactctgtaacttcggatgct
cagaaactggagcggacggtccaggagctgctggaccaagtggagttcatcaagaactcc
aacatcagaggggcaacagacagcgtcactaagtacttcctgcagtcccaagcagccgag
gcgcgagcaaatgcctcaaccatcaacgccggcaacccagttgaatcttctgccgccctg
cggcaactcacagaagacaaaatgaaccaaaccagggaggagtttctggagagacagtct
gagcatgctcagaagctggacaacctggctggagagatggagactttggacctatcagtg
atcagctataagacctgtggcagtccatcatccggccaagactcctgctggtcttcgccc
tgcggaggtctgggctgtgtggaccctgaaggtcagcccaagtgtggaggagaaggatgt
gatggtgcagtgacagcagccaacagcatcctgttgaagactcaagaggccgagcaggaa
atcatcagcgccatggcagaggtggagaagctctccaagatggtgttggaggtgaaaatg
caggcggatgaggcgaagctcagtgcccagaatgtccttatgaagaccaacagaaccaaa
cacaaggttgaccagagcaacgacgagctgcgaagcttgatcagacagatcaaagacttc
ctcacacaggacgctgcagacctggagagcatcgaactggtggcaaatgaagttctggcc
atgcagatgccgaccacaccggctcagctgcagaacctaacggatgagatccgacacaag
gtgggagagctgggacacgtggaggcaatcttacagcagagcgccgacgacattcagagg
gcagagactctgctggaccaggcccgccaagcaagtaagcaggcgacagatacgaaggac
tctgcagagaaagtgaaacaagctctggaagaagctcagagagctcacacagctgccagc
agcgccatccagcaggccgcctccgacatccagaccaccgccaagctgctctcctccgta
gagacggagacggcagacgcagagtcaaagctggacaacgccacccagaggctgcagagg
ctcgagcaggatgtgaagctgctcgccgacagatccgcaaacgttactcagagaaccaag
ctggccaatcaggaagccgcagacatcggaaggatcgcagaggaggtcaaaaaggagttt
gagtcggaggtgaagcaaaagtacagcacagtggaacagctgatagatcagaaagcgggg
ggtgtggccgacgctaagaagagggcggagtcactgcagaaccaggccaaacagttgctg
ctgcaagccagcgacaagttgcagctgctgaaagatctggaaaagtcgtacgatgacaat
cagcgaactcttgagttgaaagctgaacagctggttgagatggaggcagcagtgaagaag
ctgctgcaggaaatcagccataaggtcaccctctacagcacctgcttcttttag
DBGET
integrated database retrieval system
