Xiphophorus couchianus (Monterrey platyfish): 114160043
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Entry
114160043 CDS
T05908
Symbol
shank1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1 isoform X1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
SH3_2
Ank_5
SAM_2
PDZ_6
PDZ
SH3_9
FERM_f0
SH3_1
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
114160043
NCBI-ProteinID:
XP_027898200
LinkDB
All DBs
Position
16:complement(3867392..3962220)
Genome browser
AA seq
2425 aa
AA seq
DB search
MTMPFSPLSSDEEQQRMLGNSRHLYPGAEDEEEEEEEEEMEEDERDEDGEEEENGELEGE
EDDDDEEMVEEVRRGGIPRIGRGEGHRQSGKPAGRPGGDRQMRPGNPGHAANPYSANPGP
THQAAANQQQRRLKERTANSVPSEDTHIAMMVFRIGIPDIKQTKCLRFNPDATVWKAKQQ
VLCSLTESLRDVLNYGLFQPATDGHDAKFLEEERPLREYPQSFEKGVPYLEFRYKTRVYK
QTNLDEKQLAKLHTKASLKKFMDYIQTSAVDKMAKFIDKGLDPNYQDPDTGETPLSLAVQ
CEPGGGEAIRVLVDGGAHIDFRAKDGLTPLHKAVRGHRHTALLVLLSLGASPDYKDRRGL
TPLYHTVLTGGDTSCCETLLYHRAKLGIRDENGWDETHQACQNGNSQHLEHLLFYGADSS
SQNASGNTALHICALYNKESCARILLYRGASKDMKNNSGQTPFQVAVVSGHFELGEIIKN
HRDTDVVPFVESPKYAPQRRESTRTLAVPHPHPFLRANSDSSMNLPDWMAVPNAPSTNIV
SVQGYKHTGTLRSSSSPRGARTRSPSRGRIGDKEDRSRQSQRRGPPPTSTTTIQTAGQRR
RLYSAVPGRVFVATRSHSAQGEREISFSKGDRVKVLSVGEGGYWEGTVRGRTGWFPSDCV
EEVVLRSQDNRSESRGERAKRLFRHYTVGSYDSFDAPSDYIIKEKTVLLQKKDSEGFGFV
LRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQ
VVNMIRQGGNSLMVKVVMVTRNPDMEEGARKKIPQQSKRLSTPAIALRSKSMTSELEEMV
ERAATPWKKKSEFESSQVSEKKRTVYQMALNKLDEILAAAQQTISTNEASGTRGHGPKRD
RGRSFYGNEPSYADQPGMGMMSGLGLGYERGQYGQGHGPPHGIMRQKSIGVPEEEKQFLH
PPAMKFARSLSVPGPDDIPPPPTTAPPEPPFSSAPPLGWRTKLSQQPSVSVSQSTSSSAH
YQPFSQPGHLSQGGRERAGGPTAGPAADHTTPYVHASAHTAQSRTASRKVAYTGEPVGAG
IGAGAGAKPAGLRRGYSTAVPPSSIATVMPQQQQTTQSQPQRADRSTAGAGGPKGGARRG
KGPLVKQSKIEELRLGQGSLGSKDSVEKSSIPIPTIIVKAPSTSSSGRSSQGSSVEADVP
ASGETGDTKTPHGPPPSTPAPQPPAPPSIPAPPPPSLPSIRAQDNLDFTSQFGAAIVGAA
RRDRERFLEARRKSASLFMSAEEDLSLGMSEALGGVSRTQVSQQQLNTQPESSSTRLRPS
KSIDEGMFSADTFIQHTRSMPPAFGLPEYSSTALDYQPKSVPADLYTAAGRQPAPSANTT
FIHPLTGKALDPTSPLGLALAARERALRDDSRIRRGTEHLFTRQMSSVVFPSSAVTSQPV
SSHTTQSSSSYLVTSSSLAATTPTVGRPPSPRILRGVGSTWGEEGGERERDGGGTREGLR
VRFSEDKTVHTHHYQSQPYQPSYKERERSRERERDHSRERDMRRAEQAAESVAPQTRRPS
FLRMESQADAYMLSLTPPSPPPNIIQQASGSTGSGMMVLPPPAPSVDADDEFVYADPLPP
PLEFANSFDRGGLGYSQHAMLSNSLIHRQQQVPPPPPPPPPPPPPPPPPPPQKEHYISSF
PAHTPLPSPQAGDSTASSLTSYDSEVANLTQSAPSPSQTSPNPPPPSSPSTLQPAMGLPP
PPAVSPPPPPGAGFYHRPFSMSHHLYNSTHASGRSSPTLSQHAVAPPPAYRGPPAPSSTA
ATSVPHRGTVSHATTASCAATTTTAATTSASTQLHQERTHPAHSTYSTTITGRTGEHYRP
HPTAKKGESQETVVDSGIELDSRSSSDHHLDSIVGLSGAGVRGDRLDRGERLGAGGLGRM
GGGAGETERGGADFLESYMSYLDGQTFEMQNATVAASTYPKSSRFREGSRAGDSHRQTST
APAAYHSHRQRDGQVEDDVEEGLGDDESGQDGYGMRDMQNLGRPTSPYFDRPRTPEMRPL
WGDSQMSGDMGSQSGSLLEGKKIYPPASSMKPSIITELSSKLQQRSKDSWSSHRPLSRHR
FSEDSASALSPPSVRSQSLSPISLSQPSLSPSPTPASQYPNWGRSPSPQPPAASQPPRSH
SPLSPTSYSPYPTSPKHRPVYRTKALEFQFIPSRESRKAESHILQRRRAPSPLISQSERP
KVAPPRPSSLPLLPTSPLYSAIYDLRGSITPPSPGNPLGDPYFSPSPPLFAPSGAPPPPN
STLVVSRSLSPTHFLSGTSSPPLHPHPPPTCLSYPHLPPPSPTKPFASKPLPYWTKYDVA
DWLVYLNLGEHRERFLDNEIDGTHLPSLTKEDYLDLGVTRVGHRMNIERALRSVMDRLSS
SPFPISVLSPREGQPERRRDNGSRS
NT seq
7278 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgccattcagccccctgtccagcgacgaggagcaacaaaggatgctgggaaac
agcagacatctctatcctggggcagaagacgaggaggaggaagaggaagaagaagagatg
gaagaggatgaacgcgacgaggacggggaggaagaggagaacggcgagctggaaggagag
gaagacgatgatgacgaggagatggtggaggaggtcaggcgaggaggcatccctcggatc
gggagaggcgagggacacagacagtcgggtaaacctgcgggacgacccggcggggatcga
cagatgaggccaggaaacccgggacacgccgccaacccttactcggccaatcccggaccc
acgcaccaagcagcagccaatcagcagcagaggaggctgaaggagcgcactgccaactca
gtgccatctgaagacacccacatcgccatgatggtgtttcgcatcggcatcccagacata
aagcaaacgaaatgtctgcggttcaaccccgacgccactgtgtggaaggccaagcagcag
gtgctttgctctctgaccgaatcgctgcgagacgtgctgaactacggcctcttccagcct
gccacagacggacacgacgccaagttcctggaggaggagaggccgctcagagagtaccca
caatcctttgagaaaggggtgccatatttggagttccgctataaaaccagggtttacaaa
cagaccaatctggatgagaagcaactggccaagctgcacaccaaggcgagtctgaagaaa
ttcatggattatatccaaaccagcgctgtggacaagatggccaagttcatagacaagggc
ctggatccaaactaccaggatcctgacactggtgagactcctctgtcgctggcagtgcag
tgcgagccaggtggaggagaggccatccgggtcctggtggacggaggcgctcacatcgac
ttccgtgccaaagacggactcacgccgcttcacaaggctgttcgaggccaccgccataca
gccctgctggtcctgctctctctgggtgcatctccagactacaaggaccggcgggggctg
accccgctctaccacactgtgctaacagggggcgacacctcctgctgtgaaacgctgctg
taccaccgcgccaagctgggcatcagggatgaaaacggctgggacgagacgcatcaggcc
tgccaaaacgggaactcgcagcatctggagcacctgctcttctacggggcggattcctcc
tcccagaacgcttctggaaacactgccttgcacatctgtgctttatacaacaaggaaagc
tgtgcacgaatcctgctgtaccgtggagccagtaaagacatgaagaacaacagcggccag
actccgttccaggtggctgttgtgtccgggcattttgaattgggggagattataaaaaac
caccgggatacagatgtggttccctttgtggagtctccaaagtacgccccccagaggaga
gagagcacccggacgctggctgtgccccacccccacccgtttctgcgggccaacagcgac
agcagcatgaatctgccggactggatggctgttcccaacgcgccgagcaccaacatcgtt
tctgtgcaggggtataaacacacaggaaccctgcggagctccagcagccccagaggagcg
aggacgcggtccccgtcccgcggacggatcggagacaaggaggaccggagccggcagagc
cagagacgggggcctcccccaacctccaccaccaccatacaaaccgcaggccagcgcaga
cgcctctacagcgccgtcccaggacgagtctttgtagcaacgcggtcccactccgctcag
ggcgagcgcgagataagcttcagtaaaggagacagggtcaaagtgttgagtgtcggcgag
ggcggctactgggaggggacagtcagaggtcgcacgggatggttcccctccgactgtgtg
gaggaagtggtgcttcgaagtcaggacaaccgatcagagagtcgtggagaacgagccaaa
aggttgttccgccactacactgtgggatcatatgacagctttgatgctccaagcgactac
ataatcaaggagaagacggtgcttctgcagaaaaaagacagcgagggatttggctttgtg
ctgcgaggggccaaagctcaaactcccattgaagagtttactcccactccggccttcccg
gccctgcagtatttggagtcggtggacgagggcggcgtggcgtggagagccggtctcagg
atgggggatttcctcatcgaggtcaacggtcagaacgtcgtgaaggtcggccaccggcag
gtcgtcaacatgatccggcagggcggcaacagcctcatggtgaaggttgtcatggtaacc
cgcaaccccgacatggaggaaggcgcgcggaagaaaatccctcagcagagcaagaggctg
agcactccggccatcgccctgcgctccaaatcaatgacttcagagctggaggagatggtg
gagagagctgctaccccttggaaaaaaaaatcagagttcgaatcctcacaagtttcagag
aagaagaggacagtctatcagatggctttgaataaactcgatgaaattcttgcagcggct
cagcagacaatcagcaccaacgaggcgtccgggacacggggacacgggccgaagagggac
cggggaagaagtttctatggcaacgagccgagctacgcggaccagcctgggatggggatg
atgtcgggtctgggactgggctacgagcgaggccagtacggccagggtcacggccctccg
cacggtattatgcggcagaaatccatcggtgtgcctgaggaagagaagcagttcctgcat
cctcctgcgatgaagtttgcccggagtctgtcggtgcctggtccggacgatatccctcct
cctcccacaacggctccaccggagcccccgttctcctccgctccaccacttggttggaga
acaaagttgtcccagcagccctctgtctccgtgtcccagtcaacatccagctctgcgcac
taccagcccttttcccagccagggcacctgagccagggcggtagggagagggcaggtggt
cccaccgctggcccagcagcagaccacacgacaccgtacgttcacgcatctgcccataca
gctcagagcaggactgcgtcgcgaaaggttgcctatactggggagcctgttggagctggg
attggggctggcgcaggcgctaaaccagcaggcctgaggagaggctacagcacagctgta
cccccgtccagcattgctactgtaatgccccagcaacaacagactacccagagtcaaccc
cagcgggcagaccggagcacagctggagcaggtggccctaaaggaggggccaggagaggc
aagggccctctggtgaagcaatccaagatagaggagctgcgtctaggccagggaagccta
gggagcaaagactcggtggagaaaagctccattcctatccccaccatcattgtcaaggct
ccctcaaccagcagcagtggacggagcagccagggcagcagcgtggaggctgatgtccct
gcgtcaggggagaccggtgacacaaaaacacctcacggccctcctccgtccactcctgct
ccacagccacctgctccaccctccattcctgcaccaccacctccatctttgccttctatt
cgagcccaggataatctggactttactagccagtttggggccgccattgttggcgcggct
cgccgagacagggagagattcctcgaagcccgacgaaagagtgcctccttgttcatgtct
gctgaggaggatctgagtcttgggatgagcgaagcgctaggaggagtatcaagaactcag
gtgtctcagcagcagttaaacactcagcctgaaagctcgtcaacacgattgcgcccttcc
aagtcaattgatgagggcatgttttctgcagacacctttatccaacacacccggagtatg
cctccagccttcggcctaccggagtactcctctacggccctggactatcagcccaaatct
gttcctgctgatctgtacacagcagcaggtcgacagccagcgccttccgccaacaccact
tttattcatcctcttactgggaaggcgcttgaccccacatcacctctgggcctcgctctg
gctgccagggagcgtgctctgagggatgacagcagaataaggaggggaacggagcacctc
ttcacccgccagatgtcgagcgtcgtgttcccttcgtctgctgtcacctctcagccggtt
tcgtcccacacgacacagtcttcaagctcttacctggtgacctcctcttctctggcagct
accacacccacagtcggtcgcccaccctcgcccagaatcctccgaggagtagggagtact
tggggggaagaaggtggggagcgggagcgtgatgggggaggcactcgcgagggtcttaga
gtgcggttctcggaggacaaaaccgtccacacacaccactatcagtctcagccatatcag
ccgtcttacaaagagcgggagaggtcgcgggaacgggagagagaccactcgagggagagg
gacatgaggagggcagagcaggcagctgagagtgtggccccgcaaacccgaagaccctct
tttctcaggatggaaagtcaagccgatgcctatatgctgtctctcacccctccctctcct
ccaccaaacattatccagcaggcttctggaagcacagggagtggtatgatggtccttcct
cctcctgccccttcagttgacgcggacgatgaatttgtttatgcagacccccttcctcct
ccgttagagtttgcaaacagcttcgacagagggggattgggatactcgcaacatgcgatg
ctttccaacagcctgatccaccgacaacagcaagtccctcccccaccacctcctccaccg
cctccgccgcccccaccacctcctccccctccccagaaagagcattatataagtagcttt
cctgcccatacacctctgccctctccccaggcaggtgactccactgcatccagcctcacg
tcgtatgacagcgaagtggcaaatctgactcagtctgctccttccccttcacagacatca
ccaaatcctccacccccttcctcaccctcaacccttcagccagccatgggtcttcctcct
ccccctgcagtctcacccccacctccccctggagccggtttctaccacagacccttttca
atgtctcaccacctttacaacagcactcatgcatccgggcgatcctcaccaacactttcc
caacatgcagtcgcaccacctccagcttaccgaggtcccccagctccatcctccactgct
gccacgtccgtcccacataggggcaccgtctcccatgcaacgaccgctagctgtgctgct
acaaccaccactgctgccacaacaagcgcctccactcagctccatcaagagcgaacacac
cctgctcattcgacatactccactaccatcacaggacggacaggcgagcactatcgtcct
catcccactgccaaaaaaggagagtcccaggaaacggttgtggactctgggattgaactg
gatagccgaagtagcagcgaccatcacctggacagtattgtgggcctaagtggggctggt
gtccgaggagacagactggatcggggagagagacttggagctggaggtctagggcgaatg
ggaggaggtgcgggagaaacagaacgaggaggagcggactttctagagtcatacatgagc
tacctggatgggcaaacctttgagatgcagaatgcgacggtggcagcatccacctaccca
aaaagcagcaggtttagagaaggtagccgcgctggtgactcgcatcgacagaccagcacc
gcccctgcagcgtaccactcccacaggcaaagagatgggcaggtagaggatgacgtagag
gaaggacttggagatgatgagagtggtcaagacgggtacgggatgagggatatgcagaat
ttgggccgtcccacgtcaccgtactttgataggccacgcactcctgagatgagaccccta
tggggcgacagccagatgagcggcgatatgggaagccagtcggggtcacttttagagggg
aagaagatttacccccctgcatccagtatgaagccaagcattatcactgagctgagcagc
aaattgcagcaaagaagtaaagacagctggagcagccacagaccactgagcagacacaga
ttttctgaagactccgcctccgctctgagcccgccctcagtccgctcccagtctctgtct
ccaatctctttatcgcagccgtcgttatcgccgtccccaaccccggcttcccaataccca
aactgggggcgttccccatctcctcagcctccagccgcatctcaacctccacgctcacat
tctccgttgtccccgacgtcgtactccccttaccctacgtctcccaagcacagacccgtg
taccggaccaaagctctggaattccagttcatccccagtcgagagtctcgcaaagcagaa
tcacacatactccagcgccgacgagctccgagtccgctcatctcccaatcagagaggccc
aaagtggccccgccccgcccgtcgtcacttccccttctccccacttcacccctgtacagt
gccatctatgacctccgcggttcaattaccccaccgtcacctgggaatcctcttggagac
ccttacttctcaccctctcctcccctttttgccccctctggagctcctccacctccaaac
tccaccttagtagtgtcacgatccctttctccgactcattttctgtccgggacgtcgtct
ccacccctgcacccccacccgccacctacctgcctgagttacccccacttaccgccgcct
tcccccacaaagcctttcgcttcaaagccgctgccctactggaccaagtatgatgttgca
gactggctggtgtacctcaaccttggcgagcatagagaacggtttcttgataacgagatt
gatggcacccatttaccctctttgaccaaggaagactatctggatctgggggtgacaaga
gtaggacacagaatgaacatagagcgagccctaaggagtgtaatggacaggttgtccagc
agcccgtttcccatttctgtcctctctcctcgggaagggcagcctgagaggaggagggac
aacgggagtcggagctga
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integrated database retrieval system
