Xiphophorus couchianus (Monterrey platyfish): 114160142
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Entry
114160142 CDS
T05908
Symbol
casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03013
Nucleocytoplasmic transport
xco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114160142 (casc3)
03015 mRNA surveillance pathway
114160142 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114160142 (casc3)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
114160142 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
114160142
NCBI-ProteinID:
XP_027898388
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Position
16:complement(2950533..2962241)
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AA seq
766 aa
AA seq
DB search
MADRRRRRRRASQDSEDDDESGSGSDSGRSGSPATKARGREPVPVEAPVSRSEAKSEVES
ECESEDGAGEAVLSDYDSADPEENASHSEGGEEEEEGFSEEEAPAAASEPKPAAPDGPTQ
DDGEEKDKEEEEEQEEEEEEAGGSSKEESKAEEKANLAGERQSGDGQESTDDPETKPGQQ
LDDDEDRKNPAYIPRKGLFFEHDVRGQTQEEERPKGRNRKLWKDEGRWEHDKFREEEQAP
KSREELIAIYGYDIRNGGGSGPGDRAYRQRRPRQSSPPGRDKRWRDGQRPARTWQNRGGV
PPPPSSVPPPSSSSAFPPLSAAQRSNNSSRPPPSRSRPPHYSQVHPLSQSEYRNNESNAP
QVHPRERHAPKTQLDLSGDRGGASRGGPGHGGRGGSSVVIEEVSDGQSGAAEEDPRSESA
ATAAARQPGGYQSPRRQHQEQRGSGDRAASGSAASTSDPALQSSAANREASPPAERPVER
KSYSLARRTRSRPSDLGSKQASVEESATGGNSSSPSSGGGKGWTGGSDGGSQTAAGGGGV
AELDQEVVRLNLVRQTWSQSPTSYVRSEMRGLPNPIHMASGPPQYSNMEEMGVGSNRAKR
YSSQRQRAVPEPAPPMHLGVMETGHYYEPMSYQGPIYTHGEGPAPIPPQGMLVQPEMHIP
HPGLHPHQSGGPIANPALYGGPPVSLSPGQPQQLLPPPFYPPPGVMTFPYPAMYPSPQGQ
TQVTYGGVTYYDTMQQQAQPKPSPPRRTSQPVTVKPPPPEVPYASE
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggaggaggaggcgcgcgtctcaggacagcgaggacgacgacgag
tccggctcgggttcggacagtgggaggtccggttctccagcgacaaaggcccgaggccga
gaacccgttccggttgaggcgccagtgagccggtccgaggcgaaaagcgaagttgagtcc
gagtgtgagagtgaagacggagcaggagaagccgtcctctcggattacgacagcgccgat
ccggaggaaaacgcgtcccactcagagggaggagaggaggaagaggaaggtttcagtgag
gaagaggctccagcagcagccagcgaacccaaacccgctgctcctgatggacccacacag
gatgatggagaggagaaggataaggaggaagaagaggaacaggaggaggaggaggaagag
gcaggagggtccagtaaggaggagagcaaagcggaggagaaggcaaacctggcaggagag
aggcagagcggagatggacaggagtccaccgatgacccggagacgaagcctggtcagcag
ctggacgacgacgaagaccggaagaacccggcttacattcccaggaagggtttgttcttc
gagcacgacgtccgcggacagactcaggaagaggagaggcctaaaggtcggaacaggaag
ttgtggaaggacgagggccgctgggagcacgacaagttcagggaggaggagcaggcgccc
aagagccgcgaggagctcatcgccatctacggctacgacatccggaacggcggcggcagc
ggccctggagaccgggcgtacaggcagcgcagacccaggcagagttctcctcccggcaga
gacaagcggtggagagacgggcagagaccggcccggacctggcagaaccgaggaggagta
ccacctccaccttcatctgtccctccaccctcctcttcctcagcgtttcctcccctctct
gctgctcagcggagcaacaactcctccaggcctccaccctcccgcagcagaccccctcac
tacagccaagtgcacccgttgtctcagtcagagtacaggaacaatgaatccaacgcacct
caggttcatcccagagagcggcacgccccaaaaactcaactggacctgtcgggagacaga
ggcggggccagtagaggtggaccgggccacggaggaagaggaggttcctctgtggtcatt
gaggaggtttcagacggccaatcaggtgcagcggaggaggatccgaggtcagagtctgca
gcgacggctgcagcaaggcagccgggcgggtatcagtcaccgagacgacagcatcaggaa
caaagaggcagcggggacagagctgcctccggatcggctgcctccacctctgaccccgcc
ctccagtcttcagcagccaatcgggaagcctctccaccggctgagcgccccgttgaacgt
aaatcgtattctctggcccgcaggactcgctcgcggccgtcagacctcggcagtaagcag
gcctcagtggaggagtcagcaacggggggaaacagctcctcacccagcagtggagggggc
aagggctggacggggggcagtgatgggggaagtcagacagcagcgggcgggggaggggtc
gccgagctggaccaggaagtggtccggctcaatctggtccgacagacctggagtcagagt
ccaacgtcgtacgtacgctccgagatgagaggtcttcctaaccccatccacatggccagt
gggccgcctcagtactccaacatggaggagatgggtgtgggctccaaccgggccaagcgt
tactcctcccagcgtcagagagccgttccagaaccggccccgcccatgcacctgggagtg
atggagactggacactactacgagcccatgtcgtaccagggaccaatctacacccacgga
gaaggccccgcccccatcccgccccagggcatgctggtccagccagagatgcacatccct
catcctggtctccatccccaccaatcaggaggccccatcgctaaccccgccctctacgga
ggcccacctgtctccctgtcaccggggcaaccacagcagctgctgcctcctccgttctac
cctcctcctggggtcatgaccttcccctaccctgccatgtatccaagcccacagggtcag
acccaggtgacgtacggtggcgtcacgtactacgacaccatgcagcagcaggctcagccc
aaaccgtcgccgccccgccgcacctctcagcccgtcaccgtcaaacccccccctccagag
gttccctacgcctcagagtaa
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