KEGG   Xiphophorus couchianus (Monterrey platyfish): 114160466
Entry
114160466         CDS       T05908                                 
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
  KO
K02327  DNA polymerase delta subunit 1 [EC:2.7.7.7]
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03030  DNA replication
xco03410  Base excision repair
xco03420  Nucleotide excision repair
xco03430  Mismatch repair
xco03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    114160466 (pold1)
   03410 Base excision repair
    114160466 (pold1)
   03420 Nucleotide excision repair
    114160466 (pold1)
   03430 Mismatch repair
    114160466 (pold1)
   03440 Homologous recombination
    114160466 (pold1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xco03032]
    114160466 (pold1)
   03400 DNA repair and recombination proteins [BR:xco03400]
    114160466 (pold1)
Enzymes [BR:xco01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     114160466 (pold1)
DNA replication proteins [BR:xco03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    114160466 (pold1)
DNA repair and recombination proteins [BR:xco03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      114160466 (pold1)
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     114160466 (pold1)
SSDB
Motif
Pfam: DNA_pol_B DNA_pol_B_exo1 zf-C4pol DNA_pol_B_2
Other DBs
NCBI-GeneID: 114160466
NCBI-ProteinID: XP_027898870
LinkDB
Position
16:complement(15749394..15760782)
AA seq 1105 aa
MDFKRRNGGPLMGGASQAKRGKATGDWEDSPSQFEEELSMFDDAEMDVEDMEGQAGHDVI
PVGDLFSADLNPRWRRPSAPSLDPSSDTLVFQQIDLDYYLGGSIAGMPGQSQGKVPIIRM
FGVTDSGNSVCCHVHGFAPYFYVPAPSGFTSNYLDEFKRELNSVVLKDMRSNKDNISITV
LAVDICRKESIYGYHGQRSLDFLRITMAMPRLIAPAKRLLEQGFKFGPFPIQSYQAYEAN
IDFEIRFMVDSDVVGCCWIELPKDKYRVREEKTSIDTDSQTPGKVSFCQYEVDVGWTDFI
SHPAEGEWQKIAPLRVLSFDIECAGRKGIFPEPDKDPVIQIASMVQRQGETEPFIRTVFT
LQACASIVGSQILCFTQEKQLLRSWAEFLRTVDPDIITGYNIQNFDFPYLLNRAAALKVD
YFPYLGRMRGIKSVLRESNFQSKQMGRRENKTINMEGRVQFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVKTEGGEDYTGATVIEPEKGYYSV
PIATLDFSSLYPSIMMAHNLCYTTLLQKGSAEKLGLSPDDFIKTPTGDQFVKSSMRKGLL
PEILENLLSARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIEKTKQLVESKYTISNGYQADARVVYGDTDSVMVKLGVTTVKEAMEIGR
EAAEWVSSHFTPPIKLEFEKVYYPYLLINKKRYAGLYFSSSPDTHDKMDCKGIETVRRDN
CPLVANLINTCLQKILIERDPQGAVDHAKEVISDLLCNRIDISQLVITKELTRTAQEYAG
KQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGAAAYMKSEDPIYVLENNIPIDTQY
YLEQQLSKPLLRIFEPILGETKAESVLLKGDHTRCKTVLTSKVGGLMAFAQKRSTCIGCK
AVLKTDAAVCDFCKKKESELYQKEIFHLNALEERFSRLWTQCQRCQGSLHEDVLCTSRDC
PIFYMRKKVQKDLDDQSKLVSRFGW
NT seq 3318 nt   +upstreamnt  +downstreamnt
atggacttcaagcgacgcaacggtggccctctcatgggtggtgcatcccaggccaagcga
ggtaaagcgactggtgactgggaggacagtccatcccagtttgaggaagaattgtcaatg
tttgatgacgcagagatggatgtggaagacatggaaggacaggccggacatgatgtcatt
cccgtgggtgaccttttctcagcagacctaaaccctcgttggagaaggccttctgccccc
tcactggatccatcttcagatacattggtgttccagcagattgatctcgactattacctg
ggtggctctatagctgggatgcctggtcagtcacaaggaaaagttcctatcattaggatg
tttggtgtaacagatagtgggaacagtgtgtgctgtcatgttcatggctttgcgccttac
ttctatgttcctgcaccaagtgggttcacatctaattacctggatgaatttaaaagagag
ctgaactctgttgttcttaaggacatgcgctccaataaggacaacatctcgatcacagtg
cttgctgtggacatctgccgtaaagagagcatatatggttaccacggacaacgcagcctt
gatttcttgcggataacgatggcgatgcctcgtctcatcgcgcctgcaaagcggctgctg
gaacagggctttaagtttggaccttttcccatccagagctaccaggcttatgaggccaac
atagattttgaaatcaggttcatggtggacagtgatgtagtgggatgctgctggattgaa
cttcccaaagacaagtacagagtgcgtgaagagaagacctcaatagacacagattctcag
actccaggaaaggtttctttctgtcaatatgaagttgatgtcggatggacagacttcata
agtcaccctgcagaaggagagtggcagaagatcgctccacttagggtccttagctttgac
atagagtgtgcaggaagaaaaggaatcttcccagaaccagataaagatccagtgattcag
atagcctctatggtccaaaggcagggtgaaactgagccgttcattcgcacagttttcacc
ctccaggcctgcgctagcatcgttggctctcagatattatgcttcactcaggagaaacag
cttctgcggagctgggcggagttcttaaggactgtagatccagacatcataactggatat
aatatccagaacttcgactttccctacttgctcaacagagcggctgctttgaaggtggat
tattttccatatttgggtcgaatgcgaggcatcaaatcagttctgcgagagtcaaacttc
cagagtaagcagatggggcgcagggagaacaagaccatcaacatggagggtcgagttcag
tttgatctgctgcaggttcttctaagggattacaaattacgctcctacactctgaacgct
gtgagtttccattttctacaagaacagaaggaggatgtgcaacattcaatcatcaccgat
ctgcagaatggaaacgagcaaacacggcgccgtttggcggtctactgcctgaaagatgcc
tacctcccgctgcgcctgctgcagaaactgatgtgtgtgattaactacatggagatggcc
agagtgacgggagtgcctctcacttacctcctctccagaggacagcagatcaaagttgtc
tctcagctgctgcggcaggctatgaaacaggatctggtaatgcctgttgtgaaaactgag
gggggagaagattacacgggagcaacggtcattgagccagagaaaggctattacagcgtt
cctattgccaccctggacttttcctccttgtatccgtccatcatgatggctcacaatctg
tgctacaccaccttgttgcagaaaggctctgctgagaaactgggattgtcaccagatgac
ttcatcaagactcccacaggtgatcagtttgtgaagagctctatgagaaaaggtcttctt
ccagagatcctggagaacctgctgtctgcccgaaagagggccaaagcggaactaaagaag
gaaaccgatcctttcaagaagcaggtgctagatggccgacagctagccctgaaaatcagt
gccaactctgtgtatggcttcaccggggcccaggtgggcaaactgccctgcttggagatc
tcacagagtgtcactggttttggaagacagatgattgagaaaaccaaacaactggtggag
tccaaatatacaatctccaacggataccaagctgatgccagggtggtttatggagacaca
gactctgtcatggtcaaactcggagttacaaccgtgaaagaagccatggaaattgggagg
gaagcagctgagtgggtgtcgtcgcatttcactccacccatcaagctggagtttgagaag
gtgtattacccatacctgctgatcaataagaagcgctatgcaggcctgtatttctcctcc
agtccagacacgcatgacaagatggactgtaaaggcattgagacagtccgcagagacaac
tgccctctagtggccaaccttattaacacttgtctacaaaagattctcattgagagggat
cctcaaggtgcggtggatcatgcgaaagaagtgatctcagacctgctgtgcaatcgcatt
gacatcagtcagctggtcatcactaaagagctgacgcgtacagcccaggagtacgctggc
aagcaggcacacgtggagctggccgaaaggatgaggaaaagggatgcaggtagcgcccca
aacctgggagaccgagtcccctacgtcatcatcaaggctgcaaagggagcagccgcttac
atgaagtcagaggacccaatctatgttctggagaacaatattcccatcgacacacagtac
tacctggagcagcagctgtccaagccgctgctgaggatattcgagcccatcctgggggag
accaaggcagagagcgtcctgctaaagggcgaccacacgcgctgcaagactgtgttgacc
tcaaaggtcggaggcctcatggcattcgctcagaagagaagcacctgcatcggctgtaaa
gctgtgctcaagactgatgctgctgtgtgtgatttctgcaaaaagaaagagtctgaactt
tatcaaaaagagatcttccacctgaatgcgttggaggagcgtttctcccgtctgtggact
cagtgccagcgctgccagggttcgctccatgaagatgtgctctgcaccagtcgtgattgt
ccaatcttctacatgaggaagaaggttcagaaagatctggatgaccagagcaagcttgtg
tctcgattcggatggtga

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