Xiphophorus couchianus (Monterrey platyfish): 114160466
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Entry
114160466 CDS
T05908
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03030
DNA replication
xco03410
Base excision repair
xco03420
Nucleotide excision repair
xco03430
Mismatch repair
xco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114160466 (pold1)
03410 Base excision repair
114160466 (pold1)
03420 Nucleotide excision repair
114160466 (pold1)
03430 Mismatch repair
114160466 (pold1)
03440 Homologous recombination
114160466 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xco03032
]
114160466 (pold1)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114160466 (pold1)
Enzymes [BR:
xco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
114160466 (pold1)
DNA replication proteins [BR:
xco03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
114160466 (pold1)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
114160466 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
114160466 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
114160466
NCBI-ProteinID:
XP_027898870
LinkDB
All DBs
Position
16:complement(15749394..15760782)
Genome browser
AA seq
1105 aa
AA seq
DB search
MDFKRRNGGPLMGGASQAKRGKATGDWEDSPSQFEEELSMFDDAEMDVEDMEGQAGHDVI
PVGDLFSADLNPRWRRPSAPSLDPSSDTLVFQQIDLDYYLGGSIAGMPGQSQGKVPIIRM
FGVTDSGNSVCCHVHGFAPYFYVPAPSGFTSNYLDEFKRELNSVVLKDMRSNKDNISITV
LAVDICRKESIYGYHGQRSLDFLRITMAMPRLIAPAKRLLEQGFKFGPFPIQSYQAYEAN
IDFEIRFMVDSDVVGCCWIELPKDKYRVREEKTSIDTDSQTPGKVSFCQYEVDVGWTDFI
SHPAEGEWQKIAPLRVLSFDIECAGRKGIFPEPDKDPVIQIASMVQRQGETEPFIRTVFT
LQACASIVGSQILCFTQEKQLLRSWAEFLRTVDPDIITGYNIQNFDFPYLLNRAAALKVD
YFPYLGRMRGIKSVLRESNFQSKQMGRRENKTINMEGRVQFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVKTEGGEDYTGATVIEPEKGYYSV
PIATLDFSSLYPSIMMAHNLCYTTLLQKGSAEKLGLSPDDFIKTPTGDQFVKSSMRKGLL
PEILENLLSARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIEKTKQLVESKYTISNGYQADARVVYGDTDSVMVKLGVTTVKEAMEIGR
EAAEWVSSHFTPPIKLEFEKVYYPYLLINKKRYAGLYFSSSPDTHDKMDCKGIETVRRDN
CPLVANLINTCLQKILIERDPQGAVDHAKEVISDLLCNRIDISQLVITKELTRTAQEYAG
KQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGAAAYMKSEDPIYVLENNIPIDTQY
YLEQQLSKPLLRIFEPILGETKAESVLLKGDHTRCKTVLTSKVGGLMAFAQKRSTCIGCK
AVLKTDAAVCDFCKKKESELYQKEIFHLNALEERFSRLWTQCQRCQGSLHEDVLCTSRDC
PIFYMRKKVQKDLDDQSKLVSRFGW
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggacttcaagcgacgcaacggtggccctctcatgggtggtgcatcccaggccaagcga
ggtaaagcgactggtgactgggaggacagtccatcccagtttgaggaagaattgtcaatg
tttgatgacgcagagatggatgtggaagacatggaaggacaggccggacatgatgtcatt
cccgtgggtgaccttttctcagcagacctaaaccctcgttggagaaggccttctgccccc
tcactggatccatcttcagatacattggtgttccagcagattgatctcgactattacctg
ggtggctctatagctgggatgcctggtcagtcacaaggaaaagttcctatcattaggatg
tttggtgtaacagatagtgggaacagtgtgtgctgtcatgttcatggctttgcgccttac
ttctatgttcctgcaccaagtgggttcacatctaattacctggatgaatttaaaagagag
ctgaactctgttgttcttaaggacatgcgctccaataaggacaacatctcgatcacagtg
cttgctgtggacatctgccgtaaagagagcatatatggttaccacggacaacgcagcctt
gatttcttgcggataacgatggcgatgcctcgtctcatcgcgcctgcaaagcggctgctg
gaacagggctttaagtttggaccttttcccatccagagctaccaggcttatgaggccaac
atagattttgaaatcaggttcatggtggacagtgatgtagtgggatgctgctggattgaa
cttcccaaagacaagtacagagtgcgtgaagagaagacctcaatagacacagattctcag
actccaggaaaggtttctttctgtcaatatgaagttgatgtcggatggacagacttcata
agtcaccctgcagaaggagagtggcagaagatcgctccacttagggtccttagctttgac
atagagtgtgcaggaagaaaaggaatcttcccagaaccagataaagatccagtgattcag
atagcctctatggtccaaaggcagggtgaaactgagccgttcattcgcacagttttcacc
ctccaggcctgcgctagcatcgttggctctcagatattatgcttcactcaggagaaacag
cttctgcggagctgggcggagttcttaaggactgtagatccagacatcataactggatat
aatatccagaacttcgactttccctacttgctcaacagagcggctgctttgaaggtggat
tattttccatatttgggtcgaatgcgaggcatcaaatcagttctgcgagagtcaaacttc
cagagtaagcagatggggcgcagggagaacaagaccatcaacatggagggtcgagttcag
tttgatctgctgcaggttcttctaagggattacaaattacgctcctacactctgaacgct
gtgagtttccattttctacaagaacagaaggaggatgtgcaacattcaatcatcaccgat
ctgcagaatggaaacgagcaaacacggcgccgtttggcggtctactgcctgaaagatgcc
tacctcccgctgcgcctgctgcagaaactgatgtgtgtgattaactacatggagatggcc
agagtgacgggagtgcctctcacttacctcctctccagaggacagcagatcaaagttgtc
tctcagctgctgcggcaggctatgaaacaggatctggtaatgcctgttgtgaaaactgag
gggggagaagattacacgggagcaacggtcattgagccagagaaaggctattacagcgtt
cctattgccaccctggacttttcctccttgtatccgtccatcatgatggctcacaatctg
tgctacaccaccttgttgcagaaaggctctgctgagaaactgggattgtcaccagatgac
ttcatcaagactcccacaggtgatcagtttgtgaagagctctatgagaaaaggtcttctt
ccagagatcctggagaacctgctgtctgcccgaaagagggccaaagcggaactaaagaag
gaaaccgatcctttcaagaagcaggtgctagatggccgacagctagccctgaaaatcagt
gccaactctgtgtatggcttcaccggggcccaggtgggcaaactgccctgcttggagatc
tcacagagtgtcactggttttggaagacagatgattgagaaaaccaaacaactggtggag
tccaaatatacaatctccaacggataccaagctgatgccagggtggtttatggagacaca
gactctgtcatggtcaaactcggagttacaaccgtgaaagaagccatggaaattgggagg
gaagcagctgagtgggtgtcgtcgcatttcactccacccatcaagctggagtttgagaag
gtgtattacccatacctgctgatcaataagaagcgctatgcaggcctgtatttctcctcc
agtccagacacgcatgacaagatggactgtaaaggcattgagacagtccgcagagacaac
tgccctctagtggccaaccttattaacacttgtctacaaaagattctcattgagagggat
cctcaaggtgcggtggatcatgcgaaagaagtgatctcagacctgctgtgcaatcgcatt
gacatcagtcagctggtcatcactaaagagctgacgcgtacagcccaggagtacgctggc
aagcaggcacacgtggagctggccgaaaggatgaggaaaagggatgcaggtagcgcccca
aacctgggagaccgagtcccctacgtcatcatcaaggctgcaaagggagcagccgcttac
atgaagtcagaggacccaatctatgttctggagaacaatattcccatcgacacacagtac
tacctggagcagcagctgtccaagccgctgctgaggatattcgagcccatcctgggggag
accaaggcagagagcgtcctgctaaagggcgaccacacgcgctgcaagactgtgttgacc
tcaaaggtcggaggcctcatggcattcgctcagaagagaagcacctgcatcggctgtaaa
gctgtgctcaagactgatgctgctgtgtgtgatttctgcaaaaagaaagagtctgaactt
tatcaaaaagagatcttccacctgaatgcgttggaggagcgtttctcccgtctgtggact
cagtgccagcgctgccagggttcgctccatgaagatgtgctctgcaccagtcgtgattgt
ccaatcttctacatgaggaagaaggttcagaaagatctggatgaccagagcaagcttgtg
tctcgattcggatggtga
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integrated database retrieval system