Xiphophorus couchianus (Monterrey platyfish): 114160527
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Entry
114160527 CDS
T05908
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114160527 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114160527 (xab2)
03041 Spliceosome [BR:
xco03041
]
114160527 (xab2)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
114160527 (xab2)
Spliceosome [BR:
xco03041
]
Complex B
Other components
Prp19-related factors
114160527 (xab2)
Complex C
114160527 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
NRDE-2
TPR_MalT
SNAP
TPR_1
Motif
Other DBs
NCBI-GeneID:
114160527
NCBI-ProteinID:
XP_027898967
LinkDB
All DBs
Position
16:complement(9488314..9496964)
Genome browser
AA seq
847 aa
AA seq
DB search
MPSLNGKADVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPTYEEVNNCHERALVFMHKMPRIWIDYCQFVVSQCK
ITRSRRMFDRALRALPVTQHPRIWPLYLRFVHNLPLPETALRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQEEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCMRFADMECKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTSSTGTISDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEINIDEDEDDDDQEPDEVQLEQKSVPTAV
FGGLKED
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgccttccctaaatggaaaagctgacgttatatttgaggatgatgatcttccttatgaa
gaggagatcatcaggaatccatactcagtcaagtgttggatgcgctacattgaattcaaa
cagaatggagccaaatccaccctgaacatgatatatgaacgggctctgaaggaattgcct
ggaagctataaattgtggtacaattatctgagagaaaggaggaaacaagtcaaaggaaaa
tgcattacagatccaacatatgaagaggtcaataactgccacgaaagagcacttgtgttt
atgcacaagatgcccaggatatggattgattactgtcagttcgtggtgtcacagtgtaag
atcacgagaagtcggagaatgtttgaccgggctctaagagcactacctgtaacccagcac
ccacgaatctggcctttgtatctgcgtttcgttcacaacctgcccctgcctgaaacagcc
ctgcgggtatatcgaaggtaccttaagctatctccagagaacgcagaagagtacatagac
tacttgcggtctgttggtcgcttggatgaagcagctgtgcgattagcagcaattgtaaac
gatgaaagctttgtgtccaaagagggcaagtccaactatcagctgtggcacgagctgtgc
gacctgatctctcagaatcctgataaagtgacctctttaaatgttggagccatcatacga
ggtggcctcacacgctttacagaccaacttggaaaactttggtgctctttggctgattat
tacatcaggagtggtcactttgagaaagcacgggatgtgtatgaggaagccatacttact
gtagtaactgtgagggatttcactcaagtgtttgatagctatgctcagtttgaggagagt
atgattgctgcaaagatggagaccactgctgagatgggacaagaggaggaagatgacata
gacctggagcttcgtctggcccgctttgagcagctaattgcccggcggccacttctgctc
aacagtgtattgttgaggcagaatccccataatgtgcacgagtggcacaagcgagtaaaa
ctttatgaaggaaatccacgacagatcatcaatacatacactgaggcagtacagacagtg
gatccaatgaaggccactggaaaacctcattctctctgggtttcttttgctaaattctat
gaggaaaatgaacagctggatgacgccaggacaatctttgagaaggctactaaagtaaac
tacaaacaagtggatgaccttgctgcagtttggtgtgaatatggagagatggaacttcgg
catgagaattatgatcaggcactacgcatactgaggaaagctacagcaatcccatctaag
aaagcagagtactttgattcatctgagccagtccagaacagagtgtacaagtctctgaag
gtctggtctatgctggcagacctcgaggagagtctcgggacttttcagtctacaaaagca
gtgtatgaccgcattattgatctacgcattgccactcctcaaattgtcatcaactatgcc
atgttccttgaagaacacaactactttgaggaaagctttaaagcatatgaacgagggatc
gctctcttcaagtggccaaacgtttatgacatctggaacacttaccttaccaagttcatt
gaccgttatggcggcaaaaaattggagcgagccagagatttatttgaacaagccctggat
ggctgccctgccaagtttgccaagaccatttatctgttgtatgccaaactggaagaggag
tatggattggcacggcatgccatggctgtctatgaaagagcaacacaagcagtggaaact
gaagagagacaccatatgtttaacatctacatcaagagagcagctgaaatttatggtgtt
acgtacaccagagctatttaccagaaggctattgaggttctgcctgatgagcatgcgagg
gatatgtgtatgcgatttgctgacatggagtgtaaacttggggagattgaccgtgccaga
gcaatctactcctactgctctcagatctgtgacccaagggtgacagcaaatttctggcag
acctggaaggaatttgagattcgccatggaaatgaggatacaattagagagatgttgaga
atcaagcgcagtgtccaggctacatacaacacccaggtcaactttatgtcctcgcaaatg
ctgaaggcttcaacaagctctacaggcactatttcagatcttgctcctggccagatggga
attgatgatatgaaaatgttggagcagaaagctcagcaacttgctgcagaagctgagcag
gacaaacccaaacccaaggagaaaattctgtttgtcaggagtgatacttctcgtagtgag
ttggctgagctttccaaacaagccaatcctgatgagataaatattgacgaggatgaagat
gatgatgaccaagaacccgatgaggtgcagcttgagcagaagagcgttccaacagctgtc
tttggaggtcttaaagaggactga
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