Xiphophorus couchianus (Monterrey platyfish): 114160602
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Entry
114160602 CDS
T05908
Symbol
cntn1
Name
(RefSeq) contactin-1
KO
K06759
contactin 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
114160602 (cntn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xco04515
]
114160602 (cntn1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
xco00537
]
114160602 (cntn1)
Cell adhesion molecules [BR:
xco04515
]
Immunoglobulin superfamily
Contactins
114160602 (cntn1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
xco00537
]
Others
114160602 (cntn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
Ig_DSCAM-DSCAML_C
C2-set_2
Ig_4
Pur_ac_phosph_N
PsaS
Motif
Other DBs
NCBI-GeneID:
114160602
NCBI-ProteinID:
XP_027899042
LinkDB
All DBs
Position
17:10742125..10754850
Genome browser
AA seq
1040 aa
AA seq
DB search
MASTPLLLLGLFSSVSVTLAVLFGEPRIYGEDATGYGPIFEEEPMDVVYTDDSPDKRISM
NCRARANPPATYRWRRDNWEIKLMEQPDEHYSLVGGNLVITNPIQKKHAGTYTCVARNIY
GTVLSKEARIKFGYIEEFPDEEREPVYVKEGQGAVLLCVPPKAWPQEVSYRWIFNEFPVF
LPTDRRRFVSQKTGNLYIAKVEAQDAGNYSCFVSSPIIGKSVYSKYIPLIPLPPEDGEER
KYPADIRVKFPDTTAMLASNITLECFALGNPIPHIVWRKVDATDLPANHEISESGAVLHL
YNVQYEDVGSYECEAINTKGKDWHKNWLYVESAPEWAETINNTQVDIGSEHTMRCVASGK
PFPFIRWYKDGYMYGKGELKFSSLTFDDSGMYQCIAENYWGIKYANAELRVVAWAPTFER
NPVKKHLLGARDRRVVIECKPRAAPKPRFTWTKGKEVLFNSSRVSVMFDGSLEIRNATKN
DEGLYTCFAENDRGKADSSGYLTITEATSITAAPEDSEVRVGDEVILHCAASYDPMLDIT
FIWAIDFRVIDFNAEWQHYERVMSEDGVGDLRIKNAQIWHEGRYTCTAQTVVDDDTAYAD
LKVVGVPGPPGVLRIEEIGDTWVKLLWSKPAEHNSPILYYTVQTRHFWALNEDDWRNAST
SPTFLDGTLEKADVTDLYPWMEYQFRIIATNEYGSGEASIPSLKIKTWDAPPVVSPTDVA
GYGGRNGEIVITWNPVQPWYFYGKKFGYIVALKPHNAYDWFYETISDPETRRHVHRDSYF
IPTDDDFLVREFQVKIKSVNVKGDGPYSLTKVIYYPRDVPIEPPTDVYARPVSSTEAVVW
WLPIVDTGTGLQQYIEGYQIKYWRKYDDPEPGANRIFVPATVNQTRLENMLPDSHYLIEV
RAFNGAGLGPPGEHCEMFTKRPPPSEPPRMWRYVTWTGQWLYVWWDHIQYDWFGNVSFPL
YYKVMFRKTGYIYGKVYITGWHFMDFPMPQLGDYELMVRGRYEGGDGPVRMISIKGKASL
TTPTISFLSLLLLALCITGL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacacctttattactactgggcctcttctcctctgtgtccgtcacattggcg
gtcttatttggtgaacccagaatatatggagaggacgccacaggttatggtcccattttt
gaagaagagcctatggatgtggtctacaccgatgactcacccgataagaggatctccatg
aactgcagggcccgtgcaaatcctccagctacgtacaggtggcgccgggataactgggag
atcaagctgatggaacaacccgatgaacactacagcctggttggaggaaacctggttatc
actaacccgatccagaagaaacacgctgggacgtacacgtgtgtggcccgtaatatctac
ggcactgttctcagcaaggaggcccgaatcaagtttggatatattgaggagtttcctgat
gaagagagggaaccagtgtatgtcaaagaaggccagggagcagttctgctgtgtgtccca
ccaaaggcctggccacaggaagtaagctatcgctggatcttcaacgagttcccagtattc
ctgcccacagaccgccgtcggttcgtctcccagaagacagggaacttgtacatcgcaaag
gttgaagctcaggatgctggaaactactcctgcttcgtctccagtcctatcataggaaag
agcgtctactccaagtacatcccactcatccctttacctccagaagacggtgaagagaga
aaatacccagctgacattagggtgaagtttccagacactactgcaatgctggcctccaat
attacgttggagtgctttgctcttggaaatcccatcccacatattgtgtggaggaaggtg
gacgccactgacctccctgcaaatcatgagatcagtgagtcaggcgctgtgcttcatctg
tacaatgttcagtatgaggacgttggatcatacgaatgcgaagccatcaacaccaaagga
aaggactggcataaaaactggctttatgtggagtctgcacctgaatgggcagaaacaatc
aacaacactcaagtggacattggatcagagcacacaatgcgctgcgtggcttcaggaaaa
cctttccctttcatccgttggtacaaagatggatatatgtatggcaaaggcgagctgaag
ttttccagtttaacttttgatgactcggggatgtaccagtgcattgctgagaattactgg
ggcatcaaatatgccaacgctgagctgcgagttgttgcctgggctccaacattcgagcgc
aacccagtaaagaagcatcttcttggagctagagacagacgcgtggtaatagagtgtaag
ccgagagccgctcccaaacctcgattcacctggacaaagggcaaagaggtcctcttcaac
agttcacgtgtttctgtcatgttcgatgggagcctggagatccgcaacgccaccaaaaac
gacgaaggcctttacacctgctttgctgagaatgacagagggaaggccgacagttcagga
tatcttaccatcacagaggcaacaagtataactgcagcacctgaagactctgaagttaga
gttggagacgaggtgattcttcactgtgctgcttcatacgaccccatgctggacatcact
ttcatctgggccattgacttcagagtcattgacttcaatgctgagtggcaacactatgag
cgagtaatgagtgaagatggagtcggtgacttgaggataaaaaatgcacagatttggcat
gaaggtcgctacacttgcaccgctcaaaccgtggtggatgacgacaccgcttatgctgac
ctgaaagtcgtaggtgttcccgggcctcccggtgtgctccggatcgaggagattggcgac
acctgggtgaaacttttgtggtccaaaccagctgagcacaacagccccatcctgtactac
actgttcagaccagacacttctgggctttgaatgaagacgactggaggaatgccagcaca
tctccaacctttctcgatgggactctggagaaagcagacgtcacagacttatacccgtgg
atggagtaccagtttagaatcatcgccaccaatgagtatggatccggggaggccagtata
ccttcccttaagatcaaaacctgggatgcccctccagtcgtttctcccacagacgtggca
ggatatggaggtagaaatggcgagatcgtcatcacgtggaaccctgttcagccctggtat
ttctatggcaagaaatttgggtatattgtcgcgttaaagcctcacaatgcctacgactgg
ttttatgaaaccatctcggaccctgagacaagacgacatgttcacagagactcctacttc
attccgaccgacgacgacttcctggtgcgggagttccaggtgaagataaagtcagttaat
gttaaaggagatggaccgtacagcctcaccaaggtcatctattatccaagagatgttcca
atagaacctcccacagatgtctatgccagacccgtgtcttccactgaagctgtggtttgg
tggctgcctatagttgatactggaactggcctgcagcagtacattgaggggtaccagatc
aaatactggagaaagtatgacgatccagagcccggggcaaatcgcatattcgttccagct
acagtcaatcagacccggctggagaacatgctgccagattcgcactacctcattgaggtc
cgggcgttcaacggagcaggtcttggaccgcccggtgaacactgcgagatgttcacaaag
aggccaccaccctctgagcctcccagaatgtggcgctacgtcacctggaccggacaatgg
ttgtacgtgtggtgggatcatatccagtatgactggtttgggaatgtttctttccccctg
tactacaaggtcatgtttagaaagacggggtacatctacgggaaggtctacatcactggc
tggcactttatggacttcccaatgcctcagcttggagactatgaactgatggttcgtggt
cgctatgaagggggagatggcccagtcaggatgataagtattaagggtaaagcatctctg
accacaccaacaatcagtttcttatccttgttgctgctggcgctgtgtattacaggtttg
taa
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