Xiphophorus couchianus (Monterrey platyfish): 114160832
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Entry
114160832 CDS
T05908
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114160832
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114160832
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
EGF_2
Alanine_zipper
Motif
Other DBs
NCBI-GeneID:
114160832
NCBI-ProteinID:
XP_027899478
LinkDB
All DBs
Position
17:6985324..7018359
Genome browser
AA seq
1776 aa
AA seq
DB search
MRAFIFSLAALALWSPVMGQEPEFANMCTEGSCYPATGDLLIGRAHKLTASSTCGLQEPK
RFCIVGHLEEEKKCFLCDSREMYDEDNNPISHTIENVVTTFAPNRLKTWWQSENGVENVT
IQLDLEAEFHFTHLIMTFKTFRPAAMMIERSMDFGETWQVYRYFAQNCGSVFPGISTGPM
RRVDEIICDTRYSDFEPSTEGEVIFRVLDPAFEIDDPYSLRIQNMLKITNLRIKFIKLHT
LGDNLVDFREEVTEKYYYALFDMVVRGNCFCYGHASECAPMDREQGRPEGMVHGRCVCNH
NTEGLNCERCQEFYHDLPWRPAEGRNTHSCKRCECNRHSTSCHFDLAVYISTGNVSGGVC
DDCQHNTVGRQCEQCAPFFYQHPNRDLRDPNICEPCNCDPEGSLQGGLCDSRTDVAAGLI
SGQCRCKLYVEGERCDHCRQGHYGLGQGPDGCLPCSCNILGTMPGGNPCDSDTGQCFCRR
LVTGHNCDECLPEHWGLSNDMDGCRPCDCDQGGAINNNCDPQSGQCVCRAHMFGRLCDQV
ESGFYFISLDHYTYEAEEAQHGPGVKSVARAYPQDRSPTWTGMGFAHVPEGGYIEFNVNN
IPQSMDYDILVRYEPQLPQQWEQVTVRVERPVFNPPSYTAHCSTSAQSGDEQFISLPPGF
RHVLLVSPVCLEKGLNYTIRLTFPRYSSDSHIQNPHTLVDSLVLMPRVREMEMFHGMEGE
EAWDTFQRYRCLESSRSVIKSPMTDICNDYIFSISALLHKGAMTCHCDPQGSISGVCDPS
GGQCRCRPNVVGRNCDHCAPATFLFSPAGCRSCDCDPLGSVTPFCHESTGQCECVQGATG
RQCSHCLPGFWGFPQCRPCQCNGHSEYCHPQTGECQGCRDFTTGHHCERCMNGYHGDPEL
GSGSHCRPCMCPDGPRSGRQFADSCYLLTNQMVCVCSHGYKGTRCDECAPGYYGNPLIPG
GRCTPCDCNNNIDMHDPGSCDVRTGACLKCLYHTQGHSCQQCKSGYYGDAATQSCRKCMC
NSLGTTSYVCPTPDDCRCDQHNGQCSCLPNVVGQNCDRCAPNTWNLATGTGCQRCDCDPI
HAVGSSCNVVTGQCVCKPGFSGRTCRECKELFWGNPEVKCHACDCEPEGISSGQCHRATG
QCACLEGFSGRRCDRCARGYKGDFPICEPCHQCFSVWDTVVGELTNQTRRLEAQVTELLT
TGVTAPYKELISSLERNAKAVREIVLNKTASEKLENIQDLIHLINGVVSFLNGNLSTTQE
DLNHVNDVANTTETNLDVLTEEANKLEQHVQMLMQQVHNTKNANIHGAMNTISAAHMESQ
DAELRSNAATSDPGNTLEQSAALRKATEDKLSSSQREFDRKHQRNAQKLDKLSKELDMFD
LSSLSEKMCGGSGEGESCSTCGGFGCDREDGAPHCGGEGCTGFVTTSQTALKSSLKLGQE
IQQAMEEVDKLSRMVWEANIRANEAKAKAMDVLISSNRSKERVEQSNKQLRDLIKEIRDL
LTNEKADASVIEAVANEVLALEMPTSAEKLRELTNEIREKVGTLTSVEEILSQSAKDIRS
AESLLTWAKSASEEASNVTVMAHTVKAALEKTERAQSIAMDAIQLANNNTKETTDLINSV
ESETVQSELKLSETTGRLLELEHEVGLLRQNNLEMNQKLETAERVSQRAKAIAEEAQKEF
DEDLKDKLEVVEDYMEDKGESVLQARSKADELQREARELITQSNSKLQRLRELENSYEAN
QQVLEEKAEELAELERTARLILDEISQKVSLYSSCQ
NT seq
5331 nt
NT seq
+upstream
nt +downstream
nt
atgagggccttcatcttctctctagcagcgttagcgctgtggagtcctgtcatgggacag
gagccggagtttgcaaatatgtgcacggagggcagctgctaccccgccacgggtgacctg
ctgatcggcagggcgcacaaactcaccgcttcctccacttgcggcctccaggagcccaag
cgcttctgcattgtcggacacctggaagaggagaagaaatgtttcctatgtgactccagg
gagatgtacgatgaggacaacaaccccatcagccatacgattgagaacgtggtcaccacc
ttcgcccccaatcgcctcaagacctggtggcagtctgagaatggtgtggagaatgtaact
atccagctggacctggaggccgagtttcatttcacacacctcatcatgaccttcaagacg
tttcgtcctgctgccatgatgattgagcggtccatggattttggggaaacatggcaggtt
tatcgatacttcgcccaaaactgcgggtctgtctttcccggcatctccactggaccaatg
cgtagagtggacgaaatcatctgtgacacccgctactcagactttgaaccatccacagag
ggagaggtgatatttcgggtgctggatcctgcttttgagattgatgacccctacagcttg
aggatacagaacatgctgaagatcacaaacctcagaataaagttcatcaagctccacacg
ctgggcgacaacctggtggatttcagagaggaagtgacggagaagtactactacgcgctc
tttgacatggtcgtccgaggaaactgcttctgctacggccacgcctccgagtgcgcgccc
atggacagagaacagggcagacctgaaggaatggttcatggccgctgcgtttgcaaccat
aatactgaggggctgaactgtgagcgctgccaagagttttaccacgacctgccatggaga
cctgcagagggccgaaacacccactcctgcaaaagatgcgagtgcaatcggcattccacg
tcgtgtcacttcgacctcgccgtgtacatttcaaccggtaacgttagcggaggcgtgtgc
gacgactgccagcacaacacagtgggccggcagtgcgagcagtgtgcgcctttcttctac
cagcaccccaacagagacctgagagaccccaacatctgtgaaccgtgtaactgtgacccg
gagggatctctgcagggcggactgtgtgactcgaggactgatgtggcggccgggctgatc
tcgggtcagtgccggtgtaaactctatgtggagggagagcgctgtgaccactgcagacag
ggacactacggactgggacaggggccagatgggtgcctgccttgttcctgcaacatcctg
ggaacaatgccaggaggaaacccctgtgattcagacacaggacagtgcttctgcaggcga
cttgtcaccggtcacaactgtgatgagtgcctgccagagcactggggtctgtcaaatgac
atggacggttgtagaccgtgtgactgcgaccagggaggagcaatcaacaacaactgtgac
ccccagtcagggcagtgcgtttgccgggcgcacatgttcggacgcctctgcgatcaggtc
gagtccggattctacttcatctctttggatcactacacgtacgaagctgaagaggctcaa
cacggcccgggggtcaaatctgttgcgagggcctatcctcaggaccggagccccacatgg
accgggatgggctttgctcatgttcctgaaggcgggtacatagagttcaatgtcaataac
atcccacagtcaatggactacgacatacttgtacgctacgagccgcagctgccgcagcag
tgggagcaggtgaccgttcgggtcgagcgccccgtcttcaacccgccgagctacaccgct
cactgcagcacctccgcccagagcggagacgagcagttcatctctctcccacctggattc
aggcatgtgctgctcgtgagtccggtgtgtttggagaaaggactgaactacaccatccgt
ctgactttcccgcggtactcttcggacagccacatccagaatccacacacgctcgtcgac
tctctggtgttgatgccccgggtcagagagatggaaatgtttcatgggatggagggtgag
gaagcgtgggacacgtttcagcgctacagatgtttggaaagcagccgtagcgtcatcaaa
agcccgatgacggacatctgcaatgactacatcttcagcatctctgctctgctgcacaaa
ggagcaatgacttgccactgcgaccctcagggttccatcagcggcgtgtgcgatcccagc
ggcggtcagtgtcgatgtcgacccaacgtggtcggcagaaactgcgaccactgcgctccg
gctacgtttctgttcagtcctgctggctgcagatcttgtgactgcgacccgctgggctcc
gtcactcctttctgtcacgaatcaactggtcagtgtgagtgcgtacagggagccacggga
cgccagtgttcccactgcttaccgggtttttgggggttccctcagtgccgaccgtgccag
tgtaacggccacagcgagtactgtcaccctcagaccggagagtgtcaggggtgcagagac
ttcaccaccggacatcactgtgagagatgtatgaatggttaccatggtgacccggagctg
ggatcagggagccactgtcgcccctgcatgtgtccggacggaccccgcagtggtcggcag
tttgcagacagctgttaccttctaaccaatcagatggtgtgtgtgtgcagccacggctac
aaaggaaccaggtgtgatgagtgcgccccaggttattatgggaaccctcttattcccggt
ggccgctgcacgccctgtgattgtaacaacaacattgacatgcatgacccaggatcctgc
gatgtccgcacaggtgcctgtctcaaatgtctgtaccacacgcagggccactcatgccag
caatgcaaatcgggatattacggcgacgctgccacacagagctgccggaagtgcatgtgc
aactcattggggacgacatcttacgtctgtccaacccctgacgactgccgctgtgaccag
cataatggccagtgttcctgcctgcccaacgtggtcgggcagaactgtgaccgctgcgct
cccaatacgtggaacctcgccaccggaacgggctgccaacgctgcgactgcgaccctatc
cacgctgtcgggtcttcctgcaatgtggttacgggtcagtgtgtgtgcaaaccgggtttc
agtggcaggacgtgtcgagaatgcaaagagctgttctggggaaatccagaggtcaaatgt
cacgcttgcgactgtgaacccgagggaatctccagtggtcagtgtcatcgagccacaggg
caatgtgcctgcttagaaggcttctccggccgtcgctgtgaccgctgcgccaggggctac
aagggggacttccccatctgcgaaccctgccaccagtgcttctccgtctgggacaccgtt
gtaggcgagctgaccaatcagactcgtcgtctggaggcccaagttaccgagctgctaacc
actggagtgacggcgccatacaaggagctgatcagcagtctggagagaaatgccaaggct
gtcagggagatcgtgctaaacaagaccgcttcagagaagctggagaacatccaagacctg
atacatctgatcaacggagtggtgtcgttcctcaacgggaatctgagcacaacacaggaa
gacctgaatcatgttaacgatgtagcaaacacaacggaaacaaacttggatgtactgacc
gaggaggccaacaagctggagcaacatgtccaaatgctcatgcagcaagtccacaacacc
aagaacgccaacatccatggagccatgaacacaatttctgctgcacacatggagtcccaa
gatgcagagcttcgctccaatgccgcaaccagtgatcctggcaacactctggagcagtca
gctgcattacggaaagccactgaggacaaactgagcagtagtcagagggagtttgaccgg
aaacaccaaagaaacgcgcagaagctggacaagctgtccaaagagttggacatgtttgac
ttgtcctcgcttagtgagaagatgtgtggcggctcaggtgaaggggagagctgctccacc
tgcggcggattcgggtgtgacagggaggacggagcgccccactgtggaggggagggatgc
accggtttcgtcacaacgtctcaaactgccctgaaatcctccctgaagctgggccaggag
atccagcaggccatggaggaggtggacaagctctccaggatggtttgggaagcaaacatc
cgcgcaaatgaggccaaagcgaaggcgatggatgtgctgatctcatccaatcgcagcaaa
gagagagtagagcagagcaacaagcaactccgtgacctcatcaaagagatccgcgacctt
ttgaccaatgagaaggcagatgcttctgtgatcgaggcggtggccaatgaggtgctggct
ctggagatgccgacatcggcggagaagctgcgggagctgaccaatgagatcagggagaag
gtgggcactctgaccagtgtggaggagatcctcagtcagagcgccaaagacatccgaagt
gcagaatctctcctgacttgggccaaatcagcaagtgaggaggcatcaaatgtgacggtg
atggcgcacacagtgaaggcggcgttggaaaagactgagcgtgctcagagcatcgccatg
gacgccattcagctggccaataacaacacaaaagaaaccacagacctgatcaactctgtc
gaatcagagacggtacaatcggagctgaagctcagtgagaccaccggtcgtctgttggag
ctggagcatgaggtgggactgctgaggcagaacaacctggagatgaaccagaagctggaa
acggctgagcgggtctcccaacgggccaaagcgatcgcagaagaggctcaaaaggagttt
gatgaggacctgaaggataaactggaggtggtggaagactacatggaggacaaaggggag
tcggtgctgcaggcgaggagcaaagctgatgagctgcagcgagaagccagagagctgatc
acacagagcaacagcaagctgcagagactcagagagctggagaactcctacgaagccaac
cagcaggttctggaggagaaagcagaagagctggccgagctggagcgaacagcccgcctc
atcctggatgagatcagccaaaaagtgtcgctttacagcagctgtcagtga
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