Xiphophorus couchianus (Monterrey platyfish): 114160968
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Entry
114160968 CDS
T05908
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03013
Nucleocytoplasmic transport
xco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114160968 (upf2)
03015 mRNA surveillance pathway
114160968 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114160968 (upf2)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114160968 (upf2)
mRNA cycle factors
P-body specific factors
114160968 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
114160968
NCBI-ProteinID:
XP_027899742
LinkDB
All DBs
Position
17:complement(532920..556998)
Genome browser
AA seq
1307 aa
AA seq
DB search
MPAESKPSVNMDEKDVNSFANKEKEKDKEAEWRAASGRDKAKEEAKASGKKDAGKEEKKK
RLEEEKKKKEEKERRKKEEEKQKAEEDQKKKVEEEKKQQEELQKKLEEDEAKRQREEEAA
LLKEKEEGHQLHQEAWERHQGRKELRSRNQNAQEARPEEAFFSRLDSSLKKNTAFVKKLR
TLTEQQRDTLSNDFASLNLSKYIGEAVSSLVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRRVKLAAEKFGLAFPPSEIISTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQTLADL
LDENMPELPQDKTVQEEHGPGIDIFTPGKPGEYELEGGIWEDEDARNFYENLIDLKAFVP
AILFKDNEKSGLSKDKDDAKDGKEGKDVSTTEELELELEALDIADEPLELEGGDEVENEE
LAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRR
KLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIET
KNKTVRFIGELSKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETCGRFLFRSPDSHL
RTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPIEKAVKKKRPPLQEYIRKLLYKD
LSKVTTEKVLRQMRKLPWQEPEAKGYLICCMINIWNIKYNSIHCVANLLAGLVAYQEDVG
IHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVVFRTLFSFISFGVN
PDGSPSPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKKSVDVW
TKDHPFPIDIDYMISDTLELLRPKMRLSCSLDDATRQVADLEREVLVKLGMAMEKDGRSS
AMSEGEPLDEEDEDEDEEGAADTEEQSGNESEMNEQEEDEGSENEEEEREEEEEENTDYL
TDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLD
VAIPLQLKSQLKKGGSGQQCMGEGDSDISDTMQFVMLTRKGNKQQYKILNVPLSSHLAAN
HFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSFAQRPAPANTNRERRPRYQHPKG
APNADLIFKTGGSREKRARIEKHEVQGRQRDRDRKAKQQRQQGQAVE
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgagagcaagccctcagtaaacatggatgaaaaagacgtcaactccttcgcc
aacaaagaaaaagagaaggacaaagaggctgaatggagggcggcatctggtagagacaag
gctaaagaagaggcgaaagccagcggtaaaaaggatgcaggcaaggaggagaagaaaaag
cgcttagaggaggaaaagaagaagaaagaggaaaaggagcgaaggaagaaagaggaggaa
aagcagaaagcagaggaggatcagaagaagaaagtggaggaggagaagaagcaacaggag
gagctgcagaagaagctcgaagaagatgaggccaaacggcagcgtgaggaagaggcagcg
ctgctcaaggaaaaggaggagggccaccagctgcaccaggaggcctgggaacggcatcag
ggccggaaggagctccgcagccggaaccagaacgcccaggaggcccgacccgaggaggcc
ttcttcagccgcctggactccagcctgaagaagaacacggccttcgtcaagaagctgcgc
actctgacggagcagcagcgcgacacgctctccaacgacttcgcctcgctcaacctcagc
aagtacatcggcgaggcggtgagctcgctcgtggaggccaagctgaagatctccgacgtg
ggctgcgccgtgcacctgtgctccctgttccaccagcgctacgctgagttcgcgccactg
ctgctacaggcctggaagaagcactttgaggccaggaaggaggacaaggcgcccaatgtg
agcaagctccgcaccgacctgcgcttcatcgccgagctcaccatcgtcggcctgttcacc
gacaaggaggggctgtcgctgatctacgagcagctgaagaacatcatcgggacggaccgc
gagacgcacactcacgtgtcggtggtgatcagcttctgcaagcactgcggcgacgacatc
gccggtctggtgccgcgcagggtgaagctggcggcggagaagttcggcttggcgttcccg
ccgagcgagatcatcagcaccgagaagcagcagccgttccagaacctgctgagggaatac
ttcacctcgctgaccaaacacctgaagaaggaccaccgggagctgcagaacatcgagagg
cagaaccggcggatcttgcactccaaaggggagctgagtgaagatcgccacaagcagtac
gaggagttcgccacgtcttaccagaagctgctggccaacacgcagacgctggctgacctg
ctggacgaaaacatgccagagctgccgcaggacaagacggtgcaggaagagcacggcccc
ggcatcgacatcttcacccccggaaaacccggagagtacgaactggagggcggcatctgg
gaagacgaagacgcgcgaaacttctacgaaaacctgatcgacctgaaggcttttgttccc
gctatcctgttcaaggacaacgagaagagcggcctgagcaaagacaaggacgacgccaaa
gatggcaaagaagggaaggacgtgagcaccacagaagagctggagctggagctggaggca
ctggacatcgcagacgagcctctggagctggagggaggagacgaggtggagaacgaggag
ctggccaagaagctgctggatgagcaagagcaagaagacgaggaggccaacaccgggtcg
cacctgaagttgatcgtggacgccttcattcagcagcttcctaactgtgtcaacagagac
ctgatagacaaggccgccatggacttctgcatgaacatgaacaccaaatccaaccggagg
aaactggtccgggccttgttcaccgtccccaggcagaggttggatcttctgcctttctac
tctcgcctggtggcgacgctgcatccctgcatgtcagacgtagccgaagatctttgctcc
atgctgaagggagacttcaggttccatatccgtaagaaggaccagatcaacatcgagacc
aaaaacaaaacggtgcgattcatcggagaactttccaagttcaagatgttctcaaagacc
gacacgcttcactgcctgaagatgctgctgtctgatttcacccaccaccacatcgagatg
gcctgcacgctgctggagacctgcggccgcttcctgttccgctcgcccgactctcacctg
cggaccagcgtcctgctggaacaaatgatgcgtaaaaagcaggcgcagcacctggacgcg
cgctacgtcaccatggtggagaacgcctactactactgcaacccgccgcccatcgagaag
gccgtgaagaagaagcggccgccgctgcaggagtacatcaggaagctgctatacaaggac
ctgtccaaggtcaccacggagaaggtgctgcggcagatgcgcaagctgccgtggcaggag
cccgaggcgaagggctacctgatctgctgcatgatcaacatctggaacatcaagtacaac
agcatccactgcgtggccaatctgctggccggcctggtggcgtaccaggaggatgtgggc
atccacgtggtggacggcgtcctggaggacatccggctcggcatggaggtcaaccagccc
aagttcaaccagcggcggatcagcagcgccaagttcctgggtgagctctacaactaccgc
atggtggagtcggccgttgtcttccggacgctcttctccttcatctccttcggggtgaac
ccggacggcagccccagcccgctggacccgcccgagcacctgttccgcatccggctcgtc
tgcacgctgctcgacacctgcggccagtacttcgaccgcggctccagcaagaaaaagctc
gactgtttcctcatctacttccagcggtacatttggtggaagaagagcgtggatgtttgg
acgaaggaccacccgttccccatcgacatcgactacatgatcagcgacacgctggagctg
ctgcggcccaagatgcggctcagctgctcgctggacgacgccaccaggcaggtggccgac
ctggagagggaagttctcgtcaaactgggcatggccatggagaaggacggccgctccagc
gccatgagtgaaggcgagccgctcgatgaggaagacgaggatgaggatgaagagggagcc
gctgacaccgaggagcagtcgggcaacgagagcgagatgaacgaacaggaagaggatgaa
ggatctgagaacgaggaagaggagcgtgaggaagaggaggaggagaacacagattacctg
accgactccaacaaggagaacgagacggacgaggagaacaatgaagtgacgatccgcggc
ggaggactgaagcacgtcgcctgcgctgaggacgaagacttcatccaggctctggataag
atgatgctggagaacctgcagcagcgcagcggcgaggcggtgaaggtgcaccagctggac
gtggccatcccgctgcagctgaagagccagctgaagaagggcggctcgggccagcagtgc
atgggagagggagactcggacatctctgacaccatgcagttcgtcatgctcacccgcaaa
ggaaacaagcagcagtataagatcctgaacgtccccttgtcgtctcacctggcggcgaac
cacttcaaccagcagcaggcggagcaggaggagaggatgaggatgaagaaactcaccctg
gacatcaacgagaggcaggagcaggaagactaccaggagatgatgcagtcgttcgcccag
cgtccggctccggccaacaccaaccgggagcgccggccgcgctaccagcacccaaaaggc
gctcccaacgccgacctcatcttcaaaaccggaggaagcagagagaaaagggcgagaatt
gaaaagcatgaggtccaaggcaggcagagggacagagacaggaaagccaagcagcagaga
cagcagggacaagctgtggaataa
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