Xiphophorus couchianus (Monterrey platyfish): 114161024
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Entry
114161024 CDS
T05908
Symbol
blm
Name
(RefSeq) Bloom syndrome protein isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440
Homologous recombination
xco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114161024 (blm)
03460 Fanconi anemia pathway
114161024 (blm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xco03032
]
114161024 (blm)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114161024 (blm)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
114161024 (blm)
DNA replication proteins [BR:
xco03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
114161024 (blm)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
114161024 (blm)
Bloom's syndrome complex (BTR)
114161024 (blm)
FA (Fanconi anemia) pathway
114161024 (blm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
BDHCT
Helicase_C
BLM_N
RecQ_Zn_bind
HRDC
RQC
ResIII
Motif
Other DBs
NCBI-GeneID:
114161024
NCBI-ProteinID:
XP_027899840
LinkDB
All DBs
Position
2:complement(13977259..13987928)
Genome browser
AA seq
1398 aa
AA seq
DB search
MSSLPQNNLKEQLARHNNAAHSKLSLAKPKTGAFSFKKQSSSGTTKVEYPTKVNSPNILA
NRNVNVQGKSLLTKSSLTFSNKLERTQKSKINNFFPPSTNSKSNFSLAGNSTSACQAPPA
DTGGKVIAAPAKPDNPSSCGGKGNSSTGLDLSDLPFDDWDDFEDFETPTKTKNDSLCSEK
SVRVTKTVSSSDEEFPEFTGKQSHGHLKSELSKKNREQSCMEKEEPEPGVGKTAVSLEPS
LVDGLPDDEVEDTPVKRTRRRCPPPHVTSVLSDSDEEISTMSEPLKDKTDEKAKWIDPKV
IKLNDNSEPKEDVDYIPDSPPPDETFYRPSSAETRRTHSGIVQSRDKLFQSNIPAATLLE
PSNNLSSDKTKEQLFIIMESICTLVDSIPEHELIALTCGNELLLKRAYRKRILACGVDSL
RMPQPDSTVISDTSYKETFSSCSASSLTSPSSSLFLDTKKPLNSQRLSVISVDYDSDNLD
SASLKPWNKTESSICDSPSAQSFTKPHFSLSEKTSSDVNDTDLFFSAKKLEDEQLKSKTP
THAITTDFEADDFDVDDFDIDDFNDSDIPDYFDEPPTSSMLSENPNTTCAAVTKGGPNKS
PWDKKPVTPVSAPKPQKIYSPEPNFKNPAHDRFRGFDFPHSQEMMKIFHKRFGLRQFRFN
QLEAINATLLREDAFVLMPTGGGKSLCYQLPACLSSGVTVVVSPLKSLIVDQIQKLTTLD
IPATSLSGDKSDSEAGRIYMQLSRKDPIIKLLYATPEKVSASNRLISALQNLYERGLLAR
FVIDEAHCVSQWGHDFRPDYKKLHELRQKFPNIPVMALTATATPRVQKDILNQLNMSKPQ
VFTMSFNRTNLKYAVLPKKPKKVDEDCISWIKKHYPRDSGIVYCLSRNDCDALAESLKRA
GIQALSYHAGLSDGNREYVQSKWINQDGCQVICATIAFGMGIDKPDVRYVIHASLPKSME
GYYQESGRAGRDGEISHCILFYSYTDVHRIKRIISMDQEGNKHSKTTHYNNLHSMVHFCE
NVMECRRIQLLAYFGELKFNRNFCKDHPDVSCDNCAKPNEYKLRKVTDDVKKIVRFVEEN
CEKVGARFGKTPQQNRLTLNMLVDIFIGAKSAKIQTGMFGMGAAYSRHNADRLFKKLVLD
NVLVEDLYITNNGQAVSYISAGPKAMNILSGHMEVEFYETESASSIRKQRAAVKSISKRE
EMVQNCLKELIDLCKQLGKAFGLHYYNIFSTATLKKISEKLSSDPEALLQIDGVTEDKLE
KYGAEVIKVLQKYSEWQLPVDEQTESAGNGWIDTRRTEDDDTESSTYFSNQPAQGQKRKK
APFFKYSKKMKAYGNQGYSSKGRGYSYNKSSSGSRGGSQSSGRGSTTSAAGKNLGFLSAP
TPQSNQRPFLKPTYSHIS
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtctgcctcaaaataatctgaaggaacagctggcgaggcacaacaacgctgct
cacagcaagttgtctctggctaaacctaaaacgggggctttctcgttcaaaaaacaatct
tcatcgggtacaactaaagtggagtacccaacaaaggtaaacagtccaaacattttggca
aacaggaacgtgaatgtgcaggggaaaagtttattgactaaatcttctttaacattttca
aacaagcttgaaaggactcagaaatccaaaatcaacaacttcttccctccaagtacaaat
tccaagtccaatttcagcctagccggtaactccacttcagcatgtcaggcacccccagca
gatactggcggtaaggtgattgctgctcctgctaaacccgacaacccgtcctcctgtggt
gggaaaggaaacagctccacaggattagatttatctgatttaccttttgacgactgggat
gattttgaagactttgaaacacctaccaaaacaaaaaacgactccctctgctcagagaaa
tcagtacgggtcaccaagacagtgtcatcctcagatgaagaatttccagagttcactgga
aaacaaagccacggtcatttaaaatcggagttaagcaagaagaacagagaacaatcttgt
atggagaaagaagaaccggaacccggtgttggtaaaacagcagtctcattagaacctagt
ttagttgatgggcttccagacgatgaagtggaagatactcctgttaaaaggaccagaagg
cgctgtcctcctccacatgtgacatctgtgttgagtgatagcgatgaggagatcagcacc
atgtctgaacctttaaaagataaaacagatgaaaaggcaaaatggattgatcctaaagtg
atcaagctaaatgacaactctgaacccaaggaagacgtggattatattcctgattcacct
cctcctgatgagactttttataggccttcttcagcagagacaagaagaactcactcaggc
attgtacagagcagagacaaacttttccaatcaaacatccctgctgcaactctgcttgaa
ccttctaataacctctccagtgacaaaacaaaggaacaactcttcatcattatggagtcc
atctgtactctggttgattccatccccgaacatgaactgatagctttgacctgtgggaat
gaacttttgctgaagagggcttataggaaaaggattcttgcttgtggggttgattctttg
cgtatgccgcagccggacagcacagtgatttctgacaccagctacaaagaaactttttcc
agttgtagtgcatctagtctgacgtctcccagcagttccctctttttggacactaagaaa
cctctgaattcccaaagattgtcagtaatctctgtggactatgactctgataacttggac
agtgccagtttaaagccctggaataagacggaaagcagtatttgcgactctccatcagcc
caaagtttcacaaaaccacattttagtctctcagagaaaacaagctctgatgttaatgat
actgatcttttcttctctgccaagaaattggaagatgagcaactcaaatccaaaacccca
acacatgcaattaccacagactttgaagcagacgactttgatgttgacgattttgatata
gatgactttaatgattctgacatccctgattactttgatgaacctccaacttcgtctatg
ttgagtgaaaacccaaacactacatgtgctgctgtgacaaaaggaggaccaaacaagtcg
ccatgggacaagaaaccagtgactcctgtttctgctccaaaacctcagaagatttattca
ccagagcccaacttcaaaaacccggctcacgatcgcttccgaggctttgacttccctcat
tcgcaggagatgatgaagatttttcataaacgttttggactccgtcagttcagatttaat
cagctggaagcgattaatgccactttgctgagagaagatgcatttgttttgatgccaaca
ggagggggtaaaagtttgtgctaccagctgcctgcctgtctctcatctggagtgactgtt
gttgtttctccacttaagtcgcttattgttgaccagatccagaaacttaccactctagat
attccagcaacaagtctgtctggtgataaaagtgacagtgaggcaggaaggatttatatg
cagctctcccgcaaagacccaatcattaaactgctgtatgccacacctgaaaaggtgagt
gcaagcaacaggttgatctctgctctgcagaacctgtatgagcgaggccttctagcccgc
tttgtcatcgatgaggcacattgtgtcagtcagtggggccatgattttcgtccagactac
aagaagttgcatgaactgcgtcagaagtttcccaacataccagtgatggccctgacagct
accgccaccccccgtgtgcagaaagacatcctcaaccagctaaacatgagtaaaccacaa
gtatttaccatgagtttcaacagaacaaacctcaagtacgccgttttgcccaagaaaccc
aaaaaggttgacgaggactgcatcagctggatcaagaagcactacccacgagactctggc
attgtatactgcctgtctcgtaatgactgcgatgccctggcagagagtctgaagagagca
gggatacaggcattgtcgtatcatgccggactgagcgatggcaacagagaatatgtgcag
agcaaatggatcaatcaggatggttgccaggtcatttgtgccacaatagcctttggtatg
ggtatagacaaacctgatgtgcgctatgtgatccacgccagtctgcctaaatcaatggag
ggttactaccaggagtccggaagagccggcagagatggagagatctcccactgcattctc
ttttattcctatactgatgtccaccgcatcaaaaggatcattagcatggaccaagaaggc
aacaaacactccaagacgactcattacaacaacctccacagcatggtgcacttctgtgag
aacgtgatggagtgcagaaggattcaacttctcgcctactttggagaactgaagttcaac
agaaacttctgtaaagaccatccggacgtcagctgtgataactgtgccaagcccaatgaa
tataaactgaggaaggtgactgatgatgtgaagaagattgtgaggtttgttgaggagaac
tgtgagaaagttggagcaaggtttggaaagacaccccagcaaaaccgactgacactaaac
atgctcgtggacatatttataggggctaaatctgccaaaatacagacaggaatgtttggg
atgggagctgcttactctcgccacaatgcagaccgtctcttcaagaaactggttttagat
aatgttctggtcgaagatctctacatcaccaacaatggccaagcggtgtcttacatttct
gctggacccaaagcaatgaacatactgtctggtcacatggaggtggagttctatgagaca
gagagcgcgtccagcatcaggaagcagagagctgctgtgaagagcatctccaagagagag
gaaatggttcagaattgtctgaaggagctgatagatctgtgcaagcagctgggcaaagcg
tttggccttcactattacaacatcttctccactgccaccttgaagaagatatctgagaaa
ctttcttccgatccggaggctcttttacaaattgatggagtgacggaggacaaactggag
aagtatggagctgaagtcattaaggttcttcagaaatactctgaatggcagctacctgtg
gatgagcagactgaaagtgctggaaatggctggatagacacaagacgcacagaagatgac
gatacggagtcctcaacctatttcagcaaccagcctgctcagggacaaaagaggaagaaa
gctccattcttcaagtattctaagaagatgaaagcatacggcaaccaaggctattcctct
aaaggtcgtggctatagctacaataaatcgtcctctggctccaggggtggctcccagagt
tcgggtcgggggtctacgacttctgcagcaggcaaaaatctaggattcctgtctgcccca
acgcctcaaagcaaccagcggccatttttaaaaccaacctactctcacataagctaa
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integrated database retrieval system
