Xiphophorus couchianus (Monterrey platyfish): 114161722
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Entry
114161722 CDS
T05908
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04136
Autophagy - other
xco04140
Autophagy - animal
xco04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
114161722 (atg16l1)
04136 Autophagy - other
114161722 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
114161722 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114161722 (atg16l1)
03029 Mitochondrial biogenesis [BR:
xco03029
]
114161722 (atg16l1)
Membrane trafficking [BR:
xco04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
114161722 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
114161722 (atg16l1)
Mitochondrial biogenesis [BR:
xco03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
114161722 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_DCAF4
ANAPC4_WD40
Beta-prop_SCAP
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_EIPR1
eIF2A
Beta-prop_NWD2_C
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_DCAF12
HALZ
NET2A
HEF_HK
Lectin_N
Motif
Other DBs
NCBI-GeneID:
114161722
NCBI-ProteinID:
XP_027901062
LinkDB
All DBs
Position
18:complement(1718419..1729260)
Genome browser
AA seq
603 aa
AA seq
DB search
MAERRADWKRHISDQLKLRDRVQRHTFEEIVQQYNRLLEKSDLQAVLTERYQTEKYDVQR
GHEASSLDSSRSDSLHQEMSQMRIRHQEELTELHKKRGELAQTVIELNNQIQQKDREIQS
NEARMLEYQQQIASLEGDCRDLRSNLQELEMANQTLKDEYDALQITFSALEEKLRKTSED
NQELVSRWMAEKALEANRLNAENEKDTRRRQAKLQKDLADAAKEPLPIEQDDDIEVLAED
GGKGAGETSPNRPIGRTLSKKTSQQPQGGLLDSISNIFGRRRSANSFGTSPETSETPSGG
CAEVRVPTTALHVFEAHDGEVNTVRFSPGSRLLATGGMDRRVKLWEVVSGRCEAKGALTG
SNAGITSIEFDSSGSYLLAASNDFASRIWTMDDYRLRHTLTGHSGKVLSARFLLDNARIV
SGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHFDKKVRFWDIRAESIVRE
MELLGRVTSLDLNHDRSELLTCSRDDVLKIIDLRSNAIRQTFSAQGFKCGADWTRVTFSP
DGSYVAGGSADGALYVWNVLTGKLDRTLDRNHSSAINSVSWSPSGTYVASVEKGSRAILW
SDM
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggcgggccgactggaagagacacatctcagaccagctgaagctcagggac
agagttcagagacacaccttcgaggagatcgtccagcagtacaatcgtctcttggagaag
tctgacctgcaggccgtcctcactgagagataccagacagagaagtatgacgtccagaga
ggacatgaggccagctctcttgactcatcccgcagcgactccctgcaccaggaaatgtcc
cagatgagaattcgccaccaggaggagctgaccgagctgcacaagaaacgaggcgagctg
gctcagactgtgatcgaactcaacaaccaaatccagcagaaggatcgagagatccagagc
aacgaggccaggatgttggaataccagcagcagatcgccagcctggagggagactgtcgg
gatctgaggagcaacctgcaggagctggaaatggccaatcagacgctgaaggacgagtac
gacgcgctgcagatcaccttctctgccctggaggagaagctgaggaagacgtctgaggac
aaccaggagctggtgtcccgctggatggccgagaaggctctggaggccaaccggctcaac
gccgagaacgagaaggacaccaggcgcagacaggccaaactgcagaaggacctggcggac
gctgccaaggagccgctgcccatcgaacaggacgacgacatcgaggtgctggctgaggac
ggagggaagggagctggagaaacatcaccaaaccgaccaatcggcaggacgctgagcaag
aaaacgtcccagcagcctcagggcgggctcctggactccatctccaacatctttggcagg
cgtcggtcggcaaactccttcggcacgtctccagaaaccagcgagacgccgtcgggaggc
tgtgcggaggtccgggtgccgaccacggcactgcacgtctttgaagctcatgacggagag
gtgaacaccgtccggttcagccccggctcccgtctcctagcaaccggtgggatggaccgc
agggtgaagctgtgggaggtggtctcaggtcgctgtgaggctaaaggagctctgaccggc
agcaacgcaggaatcaccagcatcgagttcgacagctctggttcctacctgctcgctgcg
tccaacgactttgccagtcgaatctggactatggacgactacagactgaggcacaccttg
acgggtcacagcgggaaggttctgtctgctcgattcctgttggacaacgcccgcatcgtg
tctgggagctacgaccgaacgctcaaactgtgggacctgcgcagcaaagtctgtatgaag
acggttttcgccggctccagctgtaacgacatcgtttgcacggagcagtgcgtcatgagc
ggacacttcgataagaaggtccggttctgggacatcagggcggagagcatcgtgcgggag
atggagctgctgggccgggtgacgtctctggacctgaaccacgaccgcagcgagctgctg
acctgctccagagacgacgtgctgaagatcatcgacctgcgcagcaacgccatccggcag
accttcagtgctcaggggttcaaatgtggagctgactggaccagagtcaccttcagtcct
gacggcagctacgtggccggcgggtcagcagatggcgctctctacgtctggaacgtcctg
acggggaaactggaccggactctggaccgaaaccacagctcggccatcaactctgtgtcc
tggtcgccgtcgggaacgtacgtcgccagcgtggagaagggcagcagagccatcctgtgg
tctgacatgtga
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