Xiphophorus couchianus (Monterrey platyfish): 114161792
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Entry
114161792 CDS
T05908
Name
(RefSeq) collagen alpha-1(III) chain-like
KO
K06237
collagen type IV alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04382
Cornified envelope formation
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114161792
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114161792
09142 Cell motility
04820 Cytoskeleton in muscle cells
114161792
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
114161792
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xco04147
]
114161792
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114161792
Exosome [BR:
xco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114161792
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114161792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114161792
NCBI-ProteinID:
XP_027901174
LinkDB
All DBs
Position
18:1143399..1172656
Genome browser
AA seq
1674 aa
AA seq
DB search
MASSAAARRRIPRLLVRLLVLGALLLLANGKLVCHCTGKSRCHCEGVKGQKGEAGYTGDP
GLPGVMGFPGSEGHLGSPGEKGNPGNAGIVGIKGSRGPPGTPGFPGPPGLPGLPGHEGPM
GQPGLPGCNGTKGEAGYRGVPGPSGPPGPRGAPGPQGMKGDSVVIPLSQEIKGAAGPQGP
TGKKGQSGHGGEPGEPGRPGAHGLPGRRGSAGIEGEKGQEGSSPTSPGPQGGKGDRGPPG
IPGMQGIKLFAEGPKELKGEPGEVGQKGFPGLPGEPGSPGAKGEKGDRGEPGSLGKPGKT
GLLGELGQPGDPGEFGFIGPPGVDGAAGEKGDRGPPGPPGQTISNYISVKGQRGFPGPFG
PAGFLGIQGPIGFPGLKGESGEASNGPPGSPGPTGSGGPKGEPGPPGLVVTGPPGLTGAP
GPLGLQGEPGEPGIPNMDIVGQGVLGTTGSKGSQGPPGDKGAVGEKGQKGQACIDCHFQA
GPPGPQGPPGAPGQNGLPGAAGSPGPAGNKGFKGAAGPPGEQGPRGPQGSPGAPGPPGEP
GSNPRPGQKGEAGDQGDAGLRGKAGQHGYPGPPGPKGETGQKGNPGLQGSKGHRGLPGPS
GARGATGPPGPPGRSRPGRPGPMGPKGANGYMGDRGAPGPRGEKGSKGNIWNIPGEPGPK
GSRGQPGETGPEGENGLLGLRGCTGPKGQKGNDGFSHKGNRGNVGSKGVKGSRGEPGFPC
YGMKGRVGPPGPPGPVGLKGNRGFGLPGEAGKPGPRGQDACEGPPGDPGPPGLPGVQGPA
GQDGRQGPKGHRGVDGEPGSTGPPGPCVPGCPGPPGLRGPAGPIGPTGTKGPPGLKGDSG
THCPRVPGLRGPPAPPGPDGVPGLAGEVGPKGWRGNPGEPGGPGPRGDMGVPGPMGCPGN
LGPPGTCGEPGPKGQKGGDGSRGSQGPPGEPGDKGGTGPKGFPTVIKTTGNPGDSGFPGP
RGFTGEKGQGGPPGNRGPKGLDGKSGETGPPGCPGDPGRDGERGPCGFTGPPGDKGCTGR
PGDPGEKGATGTNGLPGSDGGSGKPGDKGRKGEAGFGWGAKGCKGMKGIPGRPGPSGPKG
PGGPAGDVGPLGPCGPCGFVGSKGPPGSKGSPGRAGEKGWDGPPGNCGPPGPPGNPGCWG
SPGAPGPLGPKGNQGRDGIPGPDGEKGDMGSCVPGPKGPTGRRGPPGCVGDRGPLGCCGP
PGPSGPAGDPGYKGAKGPPGPPGCAGKKGGECIDGTKGYKGFPGPKGPKGPKGPSGPPGP
PGPGYKGHKGVKGEPGPPGPPGPIGDLGPCGPPGPWGPPGYPGEKGYRGPVGAKGPIGME
GEKGPPGNPGPGGPAGRIGNPGPSGKDSYFPVQLASGDPGEEGTLGQVGGVGSPGFPGLR
GAFGSKGSSGAPGWTGTPGRDGLRGEDGERGRIGQKGANGERGRVGAKGPPGEPGEPGEP
GAGPPPRRNGFLFSRHSQDSAAPACPTQSTLIFRGYSLLFINGYSRAHGQDLGTVGSCLQ
RFSTAPFLICETGEECRYAERNDFSYWLSNIRSPTNQTDPEAALESKISKCSVCESEANV
IAIHSQTSAVPPCPADWQSLWTGFSFVMETGVGAEGSGQPLVSPGSCLENFQGMPFMECS
SSSGTCKYDNSLYSYWLAALDPDNMFRRPSSWILPGNNPDNISRCRVCMKIMQM
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcggcggctgcgaggcggaggatcccccgcctgctggtccggctgctggtc
ctcggcgcgctgctgctgctggccaacggcaaactggtctgtcactgcactgggaagtcc
cgctgtcactgcgagggggtcaaaggtcaaaagggagaagcaggatacacaggagaccca
ggacttcctggagtgatgggatttcctggaagcgaaggtcacctagggtcaccaggagaa
aagggtaacccgggaaacgcaggcattgtaggaattaagggctctcggggacctcctgga
acaccaggttttccaggaccgccaggtctcccagggcttcctgggcacgaagggccaatg
ggtcaacccgggctcccaggatgcaacgggacaaaaggggaggccggctaccgaggggtt
cctggaccttcaggaccgccgggaccacgaggggccccggggccacaaggcatgaaggga
gactcggtcgtgattcccctcagtcaggaaataaaaggagcagcgggaccacaagggcca
accggcaaaaaggggcaaagcggacatggaggagaaccgggcgaaccgggacggcccgga
gcccatggacttcctggaagacgaggatctgcaggaattgaaggagaaaagggtcaggaa
ggttccagtccgacgagtcccggtccacagggagggaagggcgatcgtggccctccaggg
atccccgggatgcagggcatcaaactcttcgctgaaggacccaaagagctgaagggcgag
ccgggcgaagtggggcagaaaggtttccccggtcttcctggggagccggggagcccgggg
gcgaaaggagagaagggtgacagaggagaacccggctcactgggaaaaccagggaagacg
ggattactgggagaactgggacagccgggcgaccccggagagttcggcttcatcggcccg
cccggcgtcgatggcgccgcgggagaaaaaggcgaccgagggcctccaggtcccccagga
cagaccatctctaattacatatccgtgaagggccagcgaggtttccccgggccctttgga
cccgccgggttcctcgggattcaaggtccgatcgggttcccgggactgaagggcgagtca
ggcgaggcctccaacggaccgccaggttctcctggtccaactggctcagggggtcccaaa
ggggaaccaggaccgccgggcctggtggttaccggaccgccaggattgaccggagcccca
ggacctcttggacttcagggagaaccaggagagcctggaataccaaacatggacatcgta
ggacagggtgttcttggtacgacaggttcaaaaggctctcaaggccctccaggggacaaa
ggggcggttggggaaaagggtcagaaagggcaggcttgtatagactgccattttcaggct
ggtcctcctggacctcagggaccaccaggggcgccaggtcagaacgggttgccaggtgcg
gctggatctccaggaccagcaggtaataaaggcttcaaaggagccgcaggcccacctgga
gaacagggcccccggggcccccaggggtccccgggggccccggggcctccaggcgagccg
gggtcaaaccctcggccggggcagaagggggaggccggggaccagggcgatgcggggctg
cggggaaaggcggggcagcacgggtacccaggaccgccgggtcccaaaggcgaaacggga
cagaaaggaaacccggggcttcaggggtcaaaaggtcaccggggcctgccgggcccctct
ggtgccagaggagcgacggggccaccaggcccaccgggccgcagccgtccgggtcgtcca
ggaccgatggggcccaaaggagctaacggctacatgggagaccgtggagcaccgggcccc
agaggagagaaaggctctaaggggaacatctggaacattccaggagaaccgggaccgaaa
ggctccagaggacagccgggggaaaccggacctgaaggtgagaacggacttctgggtctc
cgaggatgtactggtccaaaaggtcaaaagggcaatgacggtttctctcacaagggtaac
cggggcaacgtggggtcaaaaggagtcaaggggtccagaggagagccagggttcccctgt
tatggcatgaaggggcgagtggggccgcccggccccccagggcccgtcggcctaaaggga
aacagaggttttgggctgccgggtgaggcgggtaaaccaggccctcgggggcaggatgcc
tgtgaaggacctccgggcgatccgggaccgccgggactgccgggagttcagggacctgca
ggacaagatggccgccaggggcccaaaggtcaccgaggcgttgatggggaacctggttcc
acgggtccgcctgggccctgtgtccccggatgtccaggacctccaggactgcgaggtcca
gcgggtccaattggacccacaggaacgaaggggccgccgggtctgaagggagattctggg
acccactgccccagagtccccgggctcagagggccaccggcgccaccgggacccgatgga
gttccagggctggccggggaagtgggacccaaaggctggagagggaatcccggagagcct
ggaggcccagggccgagaggagacatgggtgttccagggccgatggggtgtcctggaaac
ctcggaccgcctgggacctgcggggaaccgggaccaaaaggtcagaagggtggagatggt
tcaagaggttctcagggacctccaggagagccaggggacaaagggggaactggaccaaaa
gggttcccaacagtcattaaaacaacagggaatcccggagactctggatttccaggaccc
agaggtttcactggggaaaagggacaaggaggccccccagggaaccgagggccaaagggc
ctggatggaaaatctggagagacagggccgccaggatgtcctggagatccaggtagagat
ggagagagaggtccttgtggtttcactggacccccaggggacaagggatgcactggtaga
ccaggtgatccaggtgaaaaaggtgcaacgggaaccaatgggctccctggttcagatgga
gggtcagggaaacccggggataagggacgtaaaggagaagcaggttttggatggggagct
aaaggctgtaaaggaatgaaggggattcctggacgtccaggaccttcaggtccaaaagga
ccaggaggaccagctggagacgttggccctctggggccctgcggtccttgtggatttgtg
ggatccaaagggccgcctggatccaaaggttctcctggtagagccggtgagaaaggttgg
gacggcccgcctgggaactgtggccctccagggcctcctggaaatccaggatgctggggg
tctcctggagcgcctggtccactgggacccaaaggaaaccagggccgggacgggatcccc
gggcctgacggagagaaaggagatatgggctcatgtgtacctggaccgaaggggccgaca
ggacgaagaggtccccctggatgcgtgggggacaggggcccgctgggatgctgtgggcct
cctggaccctctggacctgcaggagacccgggttacaaaggcgctaagggacccccaggg
cctcctggatgtgctgggaagaaagggggagagtgcattgatgggacaaagggatataaa
ggatttcctggacctaaaggaccgaaaggccctaagggtccgtccggtccacctggtcca
ccaggtcctggttacaaaggccataaaggcgttaaaggagaaccgggtcccccaggacca
ccgggaccaatcggtgacctcggtccttgtggacctcctggtccttgggggccgcctgga
tatcctggagaaaaaggctacagaggaccggttggagcaaagggtccaatcggtatggaa
ggggagaaaggaccgccaggtaaccccggtccaggaggaccagcaggacgaatcgggaac
ccgggaccaagtgggaaggactcctattttcctgtgcagctggcatcaggagacccaggt
gaagaaggaactctaggccaagtgggaggagtcggatcgccgggtttccctggattgagg
ggagcttttggttcaaaaggctcatctggagcaccgggttggacaggaacacctgggcgc
gacggactgagaggagaggatggagaaagaggacgaatcggccagaaaggtgcgaacgga
gagcgtggcagagtgggagccaagggtcctccaggtgagccaggtgaaccaggtgagcca
ggcgccggcccgccacccaggaggaacggcttcctgtttagcagacacagccaggacagc
gccgcccctgcctgcccgacccagtccacactcatattcagaggatactcgctgctcttc
atcaacggctacagccgcgctcacggacaggacctgggaacggtcggcagctgcctgcag
cgtttcagcaccgctcccttcctgatctgtgagactggagaggaatgtcgatacgctgag
aggaacgacttttcctactggctgtccaacatcaggagcccgacaaaccagaccgaccca
gaggcggcgctggagtccaagatcagcaagtgttcggtgtgcgagtctgaagccaatgtg
atcgccatccacagccagaccagcgccgtcccgccctgccctgcggactggcagtcgctc
tggaccggattctcctttgtgatggagacgggtgtaggcgccgagggctcgggtcagcct
ctggtttctcccggatcctgcctggaaaacttccaaggaatgccgttcatggagtgcagc
agcagctcaggaacctgcaagtacgacaacagcctgtacagctactggctggctgctctg
gaccctgacaacatgttcaggaggcccagcagctggatccttccagggaacaacccagac
aacatcagccgctgcagagtctgcatgaagatcatgcagatgtga
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