Xiphophorus couchianus (Monterrey platyfish): 114162042
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Entry
114162042 CDS
T05908
Symbol
vps53
Name
(RefSeq) vacuolar protein sorting-associated protein 53 homolog isoform X1
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114162042 (vps53)
Membrane trafficking [BR:
xco04131
]
Protein recycling
Others
EARP complex
114162042 (vps53)
Endosome - Golgi transport
Tethering complex
GARP complex
114162042 (vps53)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
Vps54_N
COG4_N
Laminin_II
VPS51_Exo84_N
GrpE
Syndetin_C
FBF1
NBD94
Sec8_N
Motif
Other DBs
NCBI-GeneID:
114162042
NCBI-ProteinID:
XP_027901589
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Position
18:19136357..19170452
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AA seq
832 aa
AA seq
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MMEEEEFEFTEDLEAILHLTPEVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLAN
IDDVVNKIRLKIRRLDDDIRTVVRGQTNVGQDGRQALEEAQIAIQQLFGKIKDIKDKAEK
SEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRKRQYGEVANLLQG
VVNVLEHFQKYMGIPQIRQLSERVKAAQSELGTQILADFEEAFPAQGSKRPGGPSNVLRD
ACLVANVLDPRIKQEIIKKFIRQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEE
KYGRMFPEEWCMTERIAVEFCHITKVELAKVMRTRAKEIEVKLLLFAIQRTTNFEGLLAK
RFTGCTLTDIPGQQKRPDSPLDQTNPFLEDDPGEDVGSEKDEDLAKPRKPKAPDNPFHGI
ISKCFEPHLYVYIESQDKNLGELIDRFVADFRAQGPPKAGTEEGGAVLPSCADLFVYYKK
CMVQCSQLSTGEPMIALTTIFQKFLREYAWKILSGNLPKSSSNSGGLTITSLLKEKEGYE
AAKFNVDELCLICSILSTAEYCLATTQQLEEKLKEKVDKILVERINLTGEMDTFSTVISN
SIQLLVQDLDAACDPALSAMSKMPWQSVEHVGDQSPYVTSIIMHIKQNVPIIRDNLASTR
KYFTQFCIKFTNSFIPKFINHLFRCKPISMVGAEQLLLDTHSLKTVLLDLPSIGSQVLRK
APASYTKIVVKGMTRAEMILKVVMAPHEPAVVFVDNYIKLLADGNPETFQKILDMKGLKR
SEQSSMLELFRQRLPTPPSGSDSGPSLSFSAPTPEQESSRIRKLEKLIKKRL
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggaagaagaatttgaatttaccgaagatttagaggcaattttgcatctaact
ccggaggtgcaactagccattgaacaggttttccccagccaggaccctctggacagagca
gacttcaatgctgtggagtacatcaacacactcttccccaccgaacagtctttggcgaat
atcgatgatgttgtaaataaaattcgactgaagataaggcgtcttgacgatgatatcagg
acggtagtgagaggtcagaccaacgtgggacaggatggcagacaggctttggaggaggcc
cagatagccatccagcaactctttggcaaaatcaaagacattaaggacaaggcagagaag
tcggaacaaatggtcaaggagataacgagggacatcaagcagttggatcatgccaagcgt
cacctcactacttccataaccaccctcaaccacctgcacatgttggcggggggtgtcgac
tctttagaagccatgaccagaaagcggcagtatggagaggtggccaacttgctgcaggga
gtggttaatgtgcttgaacacttccaaaaatacatgggcatacctcagatcaggcagctt
tcagagagagtgaaggcagcacagagtgagctggggactcagattctggcagattttgaa
gaagcctttcctgctcaaggctccaagagacccggtggacccagtaatgtcctcagagat
gcctgcctggtggcaaatgtactcgacccgcgcatcaaacaggagatcatcaaaaagttt
atcaggcagcacctctcggagtatctggttctcttccaggaaaatcaagatgtcgcctgg
ctggataagattgatcgccgctatgcttggatcaagcgacagctggtagactacgaggaa
aaatatggtcgcatgtttcctgaagagtggtgcatgacagagcgaatcgctgtggagttc
tgccacatcaccaaggtggaactagccaaggtgatgcgaacacgggcaaaggaaattgaa
gtgaaactgcttctgttcgctatccagaggacgacaaactttgagggtttgctggccaag
cgcttcacaggatgcaccttaacggatatacctgggcagcagaagagaccagatagccca
ctagatcaaactaacccatttttagaggacgatccgggggaagatgtgggatcagaaaag
gatgaagatcttgctaagccgaggaagcccaaagctcccgacaatccatttcatggcatt
atctccaagtgttttgagcctcatctctacgtctacattgagtcccaagacaagaacctt
ggggaattgattgaccgttttgtggctgatttccgagcacaaggcccacccaaggcaggg
accgaggagggtggtgcagtgctgcccagctgtgccgacctcttcgtttactacaagaag
tgtatggtccagtgttcccaactgagcacaggcgaacccatgatcgccctcacaacaatc
ttccagaagttcctcagagaatacgcctggaaaatcctttctggcaacctgccaaaatcc
agcagtaacagcgggggtctcaccatcaccagcctgctgaaggaaaaagaaggctatgag
gcagcgaagttcaatgtagatgagctctgcctgatctgcagcatccttagtacggcagaa
tactgtctggctaccacacaacagctggaggagaagctgaaggaaaaagtagataagatc
ctggtggagagaataaatctgaccggggagatggacactttcagcactgtgatctcaaac
agtatccagctgctggttcaggatctcgatgctgcctgcgatcccgctctgagtgctatg
agcaagatgccatggcagagcgtggagcatgtgggtgaccagagtccttacgtcacatca
atcatcatgcacattaagcaaaacgtgcccatcatcagagacaaccttgcctccactcga
aaatacttcacacagttttgcatcaaatttacaaactctttcattcctaaatttattaac
cacttgttcagatgtaagcctatcagcatggtgggagccgagcagctcctcctggataca
cactccctgaagacagttttgttggatcttccatccataggctcccaggtgctcagaaag
gcccctgccagttataccaagattgtagtgaaaggcatgacgcgtgcagagatgatactt
aaggtggtgatggccccacacgaaccagcagtggtgttcgttgataactacatcaaactt
ctggctgatgggaacccagagaccttccaaaagattttggatatgaagggtctgaagcgc
agtgaacaaagcagcatgctggagctcttcaggcagaggttacccactccaccctctgga
tctgacagcggcccatccctgtccttcagtgcccccaccccagagcaagagtcgtctcgt
atccgcaagctggagaagctcatcaaaaagagactgtga
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