Xiphophorus couchianus (Monterrey platyfish): 114162058
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Entry
114162058 CDS
T05908
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC6
KO
K22372
E3 ISG15--protein ligase [EC:2.3.2.-]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114162058
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
114162058
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Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
114162058
NCBI-ProteinID:
XP_027901612
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All DBs
Position
18:18529067..18539375
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AA seq
1014 aa
AA seq
DB search
MQMFCWGDSSSGQFGVQATLSPVSWTGPGVLTNICCGEQHTLFLREDGKVLSCGHNSQGQ
LGRRNQSGKMLGSVEGLSDVVAMACGQDHSLALCASGHVFSWGAGDDGQLGLAQGHPSNN
QRPSRVPIPMPIPVIQVACGNSHSLALTKGGDVFSWGLNSHGQLGLGKDVTLQQRPVLVC
ALTGVAVTQVSAGGSHTLFLTLSGLAYCCGANKSGQLGLNRVDEKGRFNVCMVPALRPLG
VSSISCGESHTAVLTKDGKVFTFGDGSHGQLGHNSTTTEVRPRLVEGLGETASQVACGRR
HTLVLTSSGHLFAFGNGDKGQLGTGQRDSSSSPSLVQLPWASDSAAATPSDLKLSAGWDT
NFIYTSPAKTFNHGQIIGRLDEKKLQKWVAMKYSNIEAKREIESMFYTSSSLVASFTKPE
GAPLEAGALTVDLEAACQAFDQMLAVPWIKQTVNLELLIELLILSRHPLKSPEILLILLT
CPLVQEDSNIMNVALPLAIIIEHLSEKTLETLKSYWSSLSATILIRHIMVFKNALTFILK
NGLLHTHNPGTKLLLKALKLLYKANKSGQSFKVPLSNFYLKESTAMETFNAFVDVALWLS
LSKVEDNEQTPAIFCRYPFVFPLICKVAVFNILARVMKESHHVVHEMGMPWPAEFLGNTL
DSPVPVLQLNLRRTHLVEDTFRHLAAADHAAFKRELVVQFVDDRKIMNVNKKDFFLHVFD
ELMAPESQMFMYNESQTLAWFPPKVKVEERKYFLFGVLCGLALYNHNIIHLKFPLALFKK
LLRVKTSLDDMKEFDPVMAESWRCMLEDYTPEVVEAMEMTFTVSWGGEKAELDPKEPGKS
VTGSNRKEFVAAFVNHAFNKSVEGVFKLFKEGFFKVCNIDVVEFFQPEELQTVVVGQENY
DWEVFKENTVYEGNYHADHPTIITFWKVFENLSAEEKKKFLLFLTGCDRVPFLGMKCIRM
RVAMMPDATEIHLPESLTCHTLLLLPNYKRYPVERTMEARLLQAINHNRGFWKN
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgcagatgttttgttggggagacagttcgagtggacagtttggggtccaggcaaccctt
agcccggtgtcctggaccgggcccggagtcctaaccaacatctgctgcggagagcagcac
accttattcctcagagaagacggaaaagttttatcatgtggacacaactcgcagggccaa
cttggacgaaggaaccaaagtggaaagatgcttggatctgtggagggactcagtgatgtt
gttgccatggcttgtggtcaggaccattctctggctttatgtgcttctggacatgtgttt
tcttggggggcaggagatgatggacagcttgggcttgcacaagggcaccccagcaacaac
cagagaccaagtcgagtgcccatcccaatgcccataccggtaatccaggtggcttgtgga
aactcccactcccttgcattgaccaaaggaggagatgtcttctcctggggtttaaacagt
catgggcagttgggcctggggaaggacgtgacactgcagcagagacctgtcctggtgtgc
gccttgaccggagttgcagtaacccaagtttcagcaggaggaagccacacactgttcctc
acgctctccggcctggcgtactgctgtggggccaataaatctggccagctggggctcaac
agggtggatgaaaaaggcaggttcaacgtctgcatggtacctgctctcagacctctgggt
gtctcttccatcagctgtggagaatcgcacactgctgtgttgacaaaggatgggaaagtt
ttcactttcggagacgggagccacggtcaactcggtcacaactccaccaccaccgaggtt
cggcccaggctggttgaaggtcttggagagacggcatcccaggttgcatgtggaagacgt
cacactctcgtgttgacttcttctggacatctgtttgcttttggtaatggggacaaaggc
cagctggggacaggacagcgagacagcagctcgtccccctccctagttcagcttccatgg
gcctctgacagtgctgctgccacacctagtgacttgaagttatcagctggatgggacaca
aacttcatttacacttcacctgcaaagaccttcaaccatggacaaataattggccggttg
gatgagaaaaaattgcaaaagtgggtggcaatgaagtacagtaacatcgaggcaaaaaga
gaaatcgagtcgatgttttacacaagttcaagtcttgttgcaagtttcacaaaacctgaa
ggggctccgctggaagctggtgctctaactgtggacctggaggctgcttgtcaggccttc
gaccagatgctggcagtcccatggatcaagcaaacagtaaatctggagctcctgatagaa
ttgctcattctctcaagacatcctttaaagtctccggagattctcctgattttgctgaca
tgtccgctggtacaagaagactcaaacatcatgaatgtggctttgcctctggctatcatt
attgagcatctcagtgagaagactctggaaacattaaaaagctattggtcgtctttgtcg
gccaccattttgatcaggcacatcatggtcttcaaaaacgccctgactttcattctgaag
aacggcctgttgcacacccacaacccaggaaccaaactgctgctgaaagccctgaagctc
ctttacaaagcgaacaaatctggacagtctttcaaagtcccactgagcaacttttatctc
aaggaaagcactgctatggaaacttttaatgcatttgtggatgtcgctctttggttgtcg
ctttccaaagtagaggacaacgagcaaacacccgccattttctgccgctaccccttcgtt
ttccctctgatttgtaaagttgctgtcttcaacatcttggcacgtgtgatgaaggaatct
catcatgttgttcatgaaatgggtatgccgtggcctgcggagtttcttggaaacaccctg
gactcccctgtcccggtgctgcagctgaacctgagacgaactcacctggtggaggacacc
ttcagacatcttgctgcagccgatcacgctgcatttaaaagagagcttgtggtgcagttt
gtagatgacaggaagatcatgaacgtcaacaaaaaagactttttcctccatgtgtttgat
gagctcatggctcctgaatctcaaatgtttatgtacaatgagagtcaaactctggcttgg
ttcccacccaaggttaaagtggaggaaaggaagtacttcctgtttggcgttctgtgtggc
ctggctctttacaaccacaacatcattcacctgaagttcccgctggcgctcttcaagaag
ctgctcagagtcaaaacgtccctggacgacatgaaggagtttgatcctgtcatggcagag
tcatggaggtgcatgttggaggactacacccctgaagttgtcgaagccatggagatgact
ttcactgtctcttggggtggtgagaaagctgaacttgatccaaaagaacccggaaaatct
gtcactggatctaataggaaagaatttgtcgctgcctttgtcaaccatgcctttaacaaa
tcagtggagggagtgtttaaactcttcaaggaagggtttttcaaagtgtgcaacatagat
gttgtggagttcttccagcctgaggaacttcagacagtcgtggtgggccaggaaaactac
gactgggaggtcttcaaggagaacacagtttatgaaggaaactatcatgctgatcatcca
accatcatcaccttttggaaggtgtttgaaaatctctcggcagaagagaagaaaaagttc
ctcttgttcctcacaggctgtgacagagtccccttcttgggaatgaagtgcatcaggatg
agagtggccatgatgccagatgccacagagatccacttgcctgaatccctcacctgccat
accttgctgctgctgcccaactacaagcgatacccagtagagaggacgatggaggccagg
ctccttcaggccattaatcacaacagaggcttctggaagaactag
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